UHGV-0110371

Genome information

Genome length 23,162 bps

CDS count 32

Completeness 59.92% (medium-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110371
vOTU ID	vOTU-039110
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_249746
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.19
Jumbo phage	No

Genome content
Genome length	23,162 bps
GC content	46.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	89.66%
Average CDS length	650.91 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110371_2	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0110371_2	UniRef90	UniRef90_UPI001917634A	minor capsid protein	NA
UHGV-0110371_2	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0110371_2	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0110371_2	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-0110371_2	COG	COG2369	NA	NA
UHGV-0110371_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-0110371_3	UniRef90	UniRef90_A0A1C5QU10	Phage portal protein, putative, A118 family	NA
UHGV-0110371_3	eggNOG-mapper	411462.DORLON_00795	COG NOG25118 non supervised orthologous group	NA
UHGV-0110371_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0110371_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0110371_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0110371_4	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0110371_4	UniRef90	UniRef90_A0A1C5QTK5	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-0110371_4	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0110371_4	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0110371_4	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0110371_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0110371_4	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0110371_5	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0110371_5	UniRef90	UniRef90_UPI00189AF2D9	phage terminase small subunit	NA
UHGV-0110371_5	eggNOG-mapper	552396.HMPREF0863_04210	DNA packaging	NA
UHGV-0110371_5	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0110371_5	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0110371_5	COG	COG5484	NA	NA
UHGV-0110371_5	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0110371_6	PHROG	phrog_11237	NA	unknown function
UHGV-0110371_6	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0110371_7	PHROG	phrog_6568	NA	unknown function
UHGV-0110371_8	PHROG	phrog_9958	NA	unknown function
UHGV-0110371_8	UniRef90	UniRef90_UPI0019170E6A	NA	NA
UHGV-0110371_8	Pfam	PF19789	NA	DUF6273
UHGV-0110371_8	Structural annotation	PF19789	NA	NA
UHGV-0110371_10	PHROG	phrog_15077	NA	unknown function
UHGV-0110371_10	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0110371_12	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0110371_12	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0110371_12	UniRef90	UniRef90_R6CHZ9	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0110371_12	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0110371_12	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0110371_12	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0110371_12	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0110371_13	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0110371_13	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0110371_13	UniRef90	UniRef90_A0A1C6J6I7	Regulatory protein repA	NA
UHGV-0110371_13	eggNOG-mapper	1235792.C808_05387	Primase C terminal 2 (PriCT-2)	NA
UHGV-0110371_13	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0110371_13	Pfam	PF13481	AAA domain	AAA_25
UHGV-0110371_13	COG	COG3598	RecA-family ATPase	NA
UHGV-0110371_13	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0110371_14	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0110371_14	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0110371_14	UniRef90	UniRef90_A0A1C6J6K4	Type-1 restriction enzyme R protein	NA
UHGV-0110371_14	eggNOG-mapper	1235792.C808_05388	helicase superfamily c-terminal domain	NA
UHGV-0110371_14	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0110371_14	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0110371_14	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0110371_14	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0110371_14	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0110371_15	PHROG	phrog_2698	NA	unknown function
UHGV-0110371_15	UniRef90	UniRef90_A0A414EG49	NA	NA
UHGV-0110371_15	eggNOG-mapper	478749.BRYFOR_07585	NA	NA
UHGV-0110371_15	Pfam	PF05037	NA	DUF669
UHGV-0110371_15	Structural annotation	PF05037	NA	NA
UHGV-0110371_16	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0110371_16	UniRef90	UniRef90_UPI001D084FBB	ATP-binding protein	NA
UHGV-0110371_16	eggNOG-mapper	1235792.C808_05390	AAA domain	NA
UHGV-0110371_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-0110371_16	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0110371_17	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0110371_17	PHROG	phrog_1499	NA	unknown function
UHGV-0110371_17	UniRef90	UniRef90_A0A1C6J680	Predicted ATP-binding protein involved in virulence	NA
UHGV-0110371_17	eggNOG-mapper	742723.HMPREF9477_00929	AAA domain	NA
UHGV-0110371_17	PADLOC	AAA_15	NA	NA
UHGV-0110371_17	Pfam	PF13476	AAA domain	AAA_23
UHGV-0110371_17	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0110371_17	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0110371_19	PHROG	phrog_5070	NA	unknown function
UHGV-0110371_19	UniRef90	UniRef90_B0PAM0	Bacterial transferase hexapeptide repeat protein	NA
UHGV-0110371_19	eggNOG-mapper	445972.ANACOL_01820	COG NOG06285 non supervised orthologous group	NA
UHGV-0110371_19	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0110371_19	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0110371_19	Structural annotation	NF040481	NA	NA
UHGV-0110371_21	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0110371_21	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0110371_24	UniRef90	UniRef90_R6BIK1	HTH cro/C1-type domain-containing protein	NA
UHGV-0110371_24	eggNOG-mapper	97139.C824_00056	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0110371_24	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0110371_27	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0110371_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0110371_27	UniRef90	UniRef90_UPI00191710C2	helix-turn-helix transcriptional regulator	NA
UHGV-0110371_27	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0110371_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0110371_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0110371_27	Structural annotation	PF01381, NF041951, COG2944	NA	NA
UHGV-0110371_29	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0110371_29	UniRef90	UniRef90_A0A1C6J701	Helix-turn-helix	NA
UHGV-0110371_29	eggNOG-mapper	1280698.AUJS01000007_gene1001	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0110371_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0110371_29	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0110371_30	UniRef90	UniRef90_UPI0011062393	tetratricopeptide repeat protein	NA
UHGV-0110371_30	COG	COG4748	NA	NA
UHGV-0110371_31	PHROG	phrog_15412	NA	unknown function
UHGV-0110371_31	UniRef90	UniRef90_UPI00156E50E6	heavy metal-binding domain-containing protein	NA
UHGV-0110371_31	eggNOG-mapper	537013.CLOSTMETH_03242	Putative heavy-metal-binding	NA
UHGV-0110371_31	Pfam	PF01906	Putative heavy-metal-binding	YbjQ_1
UHGV-0110371_31	COG	COG0393	NA	NA
UHGV-0110371_32	KOfam	K14059	int; integrase	NA
UHGV-0110371_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0110371_32	UniRef90	UniRef90_UPI00191722F2	site-specific integrase	NA
UHGV-0110371_32	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0110371_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0110371_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0110371_32	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA