UHGV-0110394

Genome information

Genome length 22,065 bps

CDS count 29

Completeness 54.75% (medium-quality)

geNomad score 0.9602

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110394
vOTU ID	vOTU-018176
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_250605
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.75% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9602
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.69
Jumbo phage	No

Genome content
Genome length	22,065 bps
GC content	54.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	88.90%
Average CDS length	677.90 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110394_2	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0110394_2	UniRef90	UniRef90_A0A139K489	Abi-like protein	NA
UHGV-0110394_2	eggNOG-mapper	1280953.HOC_08559	Abortive infection bacteriophage resistance protein	NA
UHGV-0110394_2	PADLOC	AbiD	AbiD	Abi
UHGV-0110394_2	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0110394_2	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0110394_2	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0110394_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0110394_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0110394_3	UniRef90	UniRef90_E7H553	HTH cro/C1-type domain-containing protein	NA
UHGV-0110394_3	eggNOG-mapper	1203554.HMPREF1476_00235	Peptidase S24-like	NA
UHGV-0110394_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0110394_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0110394_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0110394_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0110394_4	eggNOG-mapper	1040989.AWZU01000011_gene4128	Nitrate reductase delta subunit	NA
UHGV-0110394_4	COG	COG3381	Cytoplasmic chaperone TorD involved in molybdoenzyme TorA maturation	NA
UHGV-0110394_4	Structural annotation	PF15943, MF_00535, NF002773, COG4197	NA	NA
UHGV-0110394_5	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0110394_5	eggNOG-mapper	742823.HMPREF9465_00234	Helix-turn-helix domain	NA
UHGV-0110394_5	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0110394_5	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0110394_5	Structural annotation	PF07106, MF_01177, TIGR01610, COG5529	NA	NA
UHGV-0110394_6	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0110394_6	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0110394_6	UniRef90	UniRef90_K1K063	IstB_IS21 domain-containing protein	NA
UHGV-0110394_6	eggNOG-mapper	742823.HMPREF9465_00233	PFAM IstB domain protein ATP-binding protein	NA
UHGV-0110394_6	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0110394_6	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0110394_6	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-0110394_8	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0110394_8	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0110394_8	UniRef90	UniRef90_UPI0013F5B34A	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0110394_8	eggNOG-mapper	742823.HMPREF9465_00230	Holliday junction resolvase	NA
UHGV-0110394_8	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0110394_8	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0110394_9	Structural annotation	PF06530, NF006930, COG1595	NA	NA
UHGV-0110394_11	eggNOG-mapper	742823.HMPREF9465_00880	NA	NA
UHGV-0110394_13	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0110394_13	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0110394_13	UniRef90	UniRef90_R5PK02	Putative HNH endonuclease	NA
UHGV-0110394_13	eggNOG-mapper	1121324.CLIT_8c00820	HNH endonuclease	NA
UHGV-0110394_13	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0110394_13	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0110394_13	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0110394_14	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0110394_14	UniRef90	UniRef90_UPI0005AC5421	phage terminase small subunit P27 family	NA
UHGV-0110394_14	eggNOG-mapper	1485544.JQKP01000008_gene1674	Phage terminase, small subunit	NA
UHGV-0110394_14	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0110394_14	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0110394_14	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0110394_14	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0110394_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0110394_15	UniRef90	UniRef90_D6CTJ2	Putative Phage terminase large subunit	NA
UHGV-0110394_15	eggNOG-mapper	426114.THI_1948	Terminase	NA
UHGV-0110394_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0110394_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0110394_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0110394_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0110394_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0110394_16	UniRef90	UniRef90_A0A1H8GIP2	Phage portal protein, HK97 family	NA
UHGV-0110394_16	eggNOG-mapper	1005048.CFU_3367	Phage portal protein	NA
UHGV-0110394_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0110394_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0110394_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0110394_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0110394_17	KOfam	K06904	NA	NA
UHGV-0110394_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0110394_17	UniRef90	UniRef90_A0A6L6YJM7	HK97 family phage prohead protease	NA
UHGV-0110394_17	eggNOG-mapper	1397284.AYMN01000081_gene2457	Prohead protease	NA
UHGV-0110394_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0110394_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0110394_17	COG	COG3740	Phage head maturation protease	NA
UHGV-0110394_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0110394_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0110394_18	UniRef90	UniRef90_UPI000671041A	phage major capsid protein	NA
UHGV-0110394_18	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-0110394_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0110394_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0110394_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0110394_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0110394_19	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0110394_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0110394_19	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0110394_19	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0110394_20	PHROG	phrog_25	head closure Hc1	connector
UHGV-0110394_20	UniRef90	UniRef90_A0A2S8IL59	Head-tail adaptor protein	NA
UHGV-0110394_20	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-0110394_20	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0110394_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0110394_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0110394_21	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0110394_21	UniRef90	UniRef90_A0A087KRM2	NA	NA
UHGV-0110394_21	eggNOG-mapper	1524467.IV04_21490	NA	NA
UHGV-0110394_21	Structural annotation	TIGR01725	NA	NA
UHGV-0110394_22	PHROG	phrog_209	portal protein	head and packaging
UHGV-0110394_22	UniRef90	UniRef90_K7ZYZ8	FIG111678: IS, phage, Tn Transposon-related functions	NA
UHGV-0110394_22	eggNOG-mapper	742821.HMPREF9464_01828	NA	NA
UHGV-0110394_22	Structural annotation	PF09646	NA	NA
UHGV-0110394_23	PHROG	phrog_165	tail sheath	tail
UHGV-0110394_23	UniRef90	UniRef90_A0A3D3SFM4	Phage tail protein	NA
UHGV-0110394_23	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0110394_23	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0110394_23	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0110394_23	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0110394_23	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0110394_24	PHROG	phrog_185	tail tube protein	tail
UHGV-0110394_24	UniRef90	UniRef90_UPI0005F30F41	phage tail tube protein	NA
UHGV-0110394_24	eggNOG-mapper	742821.HMPREF9464_01826	Phage tail tube protein	NA
UHGV-0110394_24	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0110394_24	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0110394_25	PHROG	phrog_166	tail protein	tail
UHGV-0110394_25	UniRef90	UniRef90_UPI001BA95889	phage tail assembly protein	NA
UHGV-0110394_25	eggNOG-mapper	742821.HMPREF9464_01825	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0110394_25	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0110394_25	Structural annotation	PF10109, COG4518	NA	NA
UHGV-0110394_26	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-0110394_26	UniRef90	UniRef90_A0A6L6YME8	Phage tail tape measure protein	NA
UHGV-0110394_26	eggNOG-mapper	1286093.C266_04604	COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains)	NA
UHGV-0110394_26	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0110394_26	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0110394_26	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0110394_26	Structural annotation	TIGR01760	NA	NA
UHGV-0110394_27	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0110394_27	UniRef90	UniRef90_R7I967	DNA_circ_N domain-containing protein	NA
UHGV-0110394_27	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0110394_27	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0110394_27	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0110394_27	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0110394_29	PHROG	phrog_177	tail protein	tail
UHGV-0110394_29	UniRef90	UniRef90_A0A2D2M3R4	Baseplate protein	NA
UHGV-0110394_29	eggNOG-mapper	1316927.ATKI01000070_gene1242	tail protein	NA
UHGV-0110394_29	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0110394_29	COG	COG4379	Mu-like prophage tail protein gpP	NA