UHGV-0110455

Genome information

Genome length 30,520 bps

CDS count 42

Completeness 80.19% (medium-quality)

geNomad score 0.9715

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110455
vOTU ID	vOTU-025347
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253199
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9715
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.6
Jumbo phage	No

Genome content
Genome length	30,520 bps
GC content	51.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	88.01%
Average CDS length	641.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110455_3	PHROG	phrog_13879	NA	unknown function
UHGV-0110455_3	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0110455_3	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0110455_4	PHROG	phrog_1194	NA	unknown function
UHGV-0110455_4	eggNOG-mapper	324057.Pjdr2_1553	NA	NA
UHGV-0110455_4	Pfam	PF20458	NA	DUF6711
UHGV-0110455_7	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0110455_7	UniRef90	UniRef90_A0A3E2WIH3	SAP domain-containing protein	NA
UHGV-0110455_7	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0110455_7	Pfam	PF02037	SAP domain	SAP
UHGV-0110455_7	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0110455_7	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0110455_7	COG	COG2369	NA	NA
UHGV-0110455_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0110455_8	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0110455_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0110455_9	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0110455_9	UniRef90	UniRef90_UPI0006C0E497	NA	NA
UHGV-0110455_9	eggNOG-mapper	1294142.CINTURNW_1697	NA	NA
UHGV-0110455_9	Structural annotation	PF19591	NA	NA
UHGV-0110455_10	PHROG	phrog_158	major tail protein	tail
UHGV-0110455_10	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-0110455_10	eggNOG-mapper	1499683.CCFF01000017_gene2926	Phage tail tube protein, TTP	NA
UHGV-0110455_10	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0110455_10	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0110455_11	Structural annotation	PF05657	NA	NA
UHGV-0110455_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0110455_12	UniRef90	UniRef90_A0A7X0SF26	HK97 gp10 family phage protein	NA
UHGV-0110455_12	eggNOG-mapper	1499683.CCFF01000014_gene3905	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0110455_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0110455_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0110455_12	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0110455_13	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0110455_15	PHROG	phrog_283	major head protein	head and packaging
UHGV-0110455_15	UniRef90	UniRef90_A0A316RCU2	P22 coat protein	NA
UHGV-0110455_15	eggNOG-mapper	1297617.JPJD01000059_gene2633	P22 coat protein - gene protein 5	NA
UHGV-0110455_15	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0110455_15	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0110455_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0110455_16	UniRef90	UniRef90_A0A413FZA0	Phage capsid protein	NA
UHGV-0110455_16	eggNOG-mapper	645991.Sgly_0339	PFAM Phage minor structural	NA
UHGV-0110455_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0110455_16	Structural annotation	PF06810	NA	NA
UHGV-0110455_18	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0110455_18	UniRef90	UniRef90_A0A383RGF1	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0110455_18	eggNOG-mapper	1294142.CINTURNW_1685	Phage Mu protein F like protein	NA
UHGV-0110455_18	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0110455_18	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0110455_18	COG	COG2369	NA	NA
UHGV-0110455_18	Structural annotation	PF04233, PF00583, TIGR01641, NF000487, COG1246, COG2369	NA	NA
UHGV-0110455_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-0110455_19	UniRef90	UniRef90_R6IBR5	Phage portal protein	NA
UHGV-0110455_19	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0110455_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0110455_19	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0110455_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0110455_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0110455_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0110455_20	UniRef90	UniRef90_R6I0M1	Phage terminase large subunit PBSX family	NA
UHGV-0110455_20	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0110455_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0110455_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0110455_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0110455_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0110455_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0110455_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0110455_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0110455_21	UniRef90	UniRef90_UPI001CA794C1	terminase small subunit	NA
UHGV-0110455_21	eggNOG-mapper	1196028.ALEF01000043_gene470	Terminase small subunit	NA
UHGV-0110455_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0110455_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0110455_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0110455_22	Structural annotation	TIGR01636	NA	NA
UHGV-0110455_28	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0110455_28	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0110455_28	UniRef90	UniRef90_UPI000B8A750C	AAA family ATPase	NA
UHGV-0110455_28	eggNOG-mapper	397290.C810_01519	NA	NA
UHGV-0110455_28	Pfam	PF13481	AAA domain	AAA_25
UHGV-0110455_28	COG	COG0305	Replicative DNA helicase	NA
UHGV-0110455_28	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0110455_29	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0110455_29	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0110455_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0110455_29	Structural annotation	PF07106, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0110455_30	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0110455_30	UniRef90	UniRef90_A0A6N2R581	ERCC4 domain-containing protein	NA
UHGV-0110455_30	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0110455_30	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0110455_30	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0110455_30	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0110455_31	PHROG	phrog_18107	NA	unknown function
UHGV-0110455_31	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0110455_31	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0110455_31	Structural annotation	PF05037	NA	NA
UHGV-0110455_32	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0110455_32	UniRef90	UniRef90_A0A847VZU9	AAA family ATPase	NA
UHGV-0110455_32	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-0110455_32	Pfam	PF13479	AAA domain	AAA_24
UHGV-0110455_32	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0110455_34	eggNOG-mapper	33035.JPJF01000071_gene4461	NA	NA
UHGV-0110455_38	eggNOG-mapper	645991.Sgly_0367	NA	NA
UHGV-0110455_40	UniRef90	UniRef90_UPI0003C0D8C8	helix-turn-helix transcriptional regulator	NA
UHGV-0110455_40	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-0110455_40	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0110455_41	UniRef90	UniRef90_UPI0006817E09	helix-turn-helix domain-containing protein	NA
UHGV-0110455_41	eggNOG-mapper	428125.CLOLEP_00924	NA	NA
UHGV-0110455_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0110455_41	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0110455_41	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0110455_42	KOfam	K14059	int; integrase	NA
UHGV-0110455_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0110455_42	UniRef90	UniRef90_UPI00189A8F69	site-specific integrase	NA
UHGV-0110455_42	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0110455_42	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0110455_42	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0110455_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0110455_42	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0110455_42	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA