UHGV-0110486

Genome information

Genome length 32,359 bps

CDS count 42

Completeness 100.00% (complete)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110486
vOTU ID	vOTU-045629
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_238687
BioSample	SAMEA3708683
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	ITR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	19
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.54
Jumbo phage	No

Genome content
Genome length	32,359 bps
GC content	41.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	95.56%
Average CDS length	743.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110486_2	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0110486_2	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0110486_2	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0110486_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0110486_3	PHROG	phrog_1066	NA	unknown function
UHGV-0110486_3	eggNOG-mapper	411470.RUMGNA_02061	NA	NA
UHGV-0110486_3	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0110486_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0110486_4	UniRef90	UniRef90_A0A174HN48	Phage terminase-like protein, large subunit	NA
UHGV-0110486_4	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0110486_4	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0110486_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0110486_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0110486_4	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0110486_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-0110486_5	UniRef90	UniRef90_A0A174HQ03	Phage portal protein, HK97 family	NA
UHGV-0110486_5	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0110486_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0110486_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0110486_5	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0110486_6	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0110486_6	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0110486_6	UniRef90	UniRef90_A0A174HPB7	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0110486_6	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-0110486_6	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0110486_6	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0110486_6	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0110486_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-0110486_7	UniRef90	UniRef90_A0A174HPF0	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0110486_7	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0110486_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0110486_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0110486_7	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0110486_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0110486_8	PHROG	phrog_5223	neck protein	connector
UHGV-0110486_8	UniRef90	UniRef90_A0A7X6Q432	DNA-packaging protein	NA
UHGV-0110486_8	eggNOG-mapper	1203606.HMPREF1526_00977	NA	NA
UHGV-0110486_9	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0110486_9	eggNOG-mapper	1280689.AUJC01000011_gene1524	NA	NA
UHGV-0110486_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0110486_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0110486_10	UniRef90	UniRef90_A0A174HPL7	Phage protein, HK97 gp10 family	NA
UHGV-0110486_10	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0110486_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0110486_10	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0110486_10	Structural annotation	TIGR01725	NA	NA
UHGV-0110486_11	PHROG	phrog_78	tail terminator	connector
UHGV-0110486_11	eggNOG-mapper	1094508.Tsac_2420	NA	NA
UHGV-0110486_11	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0110486_12	PHROG	phrog_88	major tail protein	tail
UHGV-0110486_12	UniRef90	UniRef90_A0A174HPA5	Phage major tail protein, phi13 family	NA
UHGV-0110486_12	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0110486_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0110486_12	COG	COG5492	NA	NA
UHGV-0110486_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0110486_13	PHROG	phrog_88	major tail protein	tail
UHGV-0110486_13	UniRef90	UniRef90_A0A174HJR5	Major tail protein	NA
UHGV-0110486_13	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0110486_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0110486_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0110486_14	eggNOG-mapper	1123075.AUDP01000020_gene1519	NA	NA
UHGV-0110486_14	Structural annotation	PF11836	NA	NA
UHGV-0110486_15	eggNOG-mapper	411459.RUMOBE_00928	NA	NA
UHGV-0110486_17	PHROG	phrog_5218	NA	unknown function
UHGV-0110486_17	UniRef90	UniRef90_A0A414U8D6	PhageMin_Tail domain-containing protein	NA
UHGV-0110486_17	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0110486_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0110486_17	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0110486_17	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-0110486_18	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0110486_18	UniRef90	UniRef90_UPI00156E3DDD	phage tail protein	NA
UHGV-0110486_18	eggNOG-mapper	1280698.AUJS01000007_gene1048	NA	NA
UHGV-0110486_18	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0110486_19	PHROG	phrog_538	minor tail protein	tail
UHGV-0110486_19	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0110486_19	eggNOG-mapper	1280698.AUJS01000007_gene1049	NA	NA
UHGV-0110486_19	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0110486_19	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0110486_20	PHROG	phrog_9994	NA	unknown function
UHGV-0110486_20	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-0110486_20	Structural annotation	PF20747	NA	NA
UHGV-0110486_21	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0110486_21	PHROG	phrog_1	integrase	integration and excision
UHGV-0110486_21	UniRef90	UniRef90_A0A174ILR0	Tyrosine recombinase XerD	NA
UHGV-0110486_21	eggNOG-mapper	411468.CLOSCI_02414	Belongs to the 'phage' integrase family	NA
UHGV-0110486_21	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0110486_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0110486_21	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0110486_21	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0110486_22	Structural annotation	NF012201	NA	NA
UHGV-0110486_23	PHROG	phrog_25635	NA	unknown function
UHGV-0110486_23	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-0110486_23	Structural annotation	PF20747	NA	NA
UHGV-0110486_24	PHROG	phrog_538	minor tail protein	tail
UHGV-0110486_24	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0110486_24	eggNOG-mapper	1280698.AUJS01000007_gene1049	NA	NA
UHGV-0110486_24	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0110486_24	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0110486_25	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0110486_25	UniRef90	UniRef90_UPI00156E3DDD	phage tail protein	NA
UHGV-0110486_25	eggNOG-mapper	1280698.AUJS01000007_gene1048	NA	NA
UHGV-0110486_25	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0110486_26	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0110486_26	UniRef90	UniRef90_A0A174L0T5	Phage-related protein	NA
UHGV-0110486_26	eggNOG-mapper	1280698.AUJS01000007_gene1047	nuclear chromosome segregation	NA
UHGV-0110486_26	COG	COG1511	NA	NA
UHGV-0110486_26	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0110486_27	PHROG	phrog_1633	NA	unknown function
UHGV-0110486_27	UniRef90	UniRef90_UPI0006C2F0F2	NA	NA
UHGV-0110486_27	eggNOG-mapper	1280698.AUJS01000007_gene1046	NA	NA
UHGV-0110486_27	Pfam	PF17318	NA	DUF5361
UHGV-0110486_27	Structural annotation	PF17318	NA	NA
UHGV-0110486_28	PHROG	phrog_1526	NA	unknown function
UHGV-0110486_28	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-0110486_29	PHROG	phrog_117	major tail protein	tail
UHGV-0110486_29	UniRef90	UniRef90_UPI00156E6ACC	phage tail protein	NA
UHGV-0110486_29	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-0110486_29	COG	COG5492	NA	NA
UHGV-0110486_29	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0110486_30	PHROG	phrog_123	tail terminator	connector
UHGV-0110486_30	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0110486_30	Structural annotation	PF06141	NA	NA
UHGV-0110486_31	PHROG	phrog_387	neck protein	connector
UHGV-0110486_31	eggNOG-mapper	908337.HMPREF9257_0534	NA	NA
UHGV-0110486_32	PHROG	phrog_501	head closure Hc1	connector
UHGV-0110486_32	eggNOG-mapper	1280698.AUJS01000007_gene1041	NA	NA
UHGV-0110486_32	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0110486_33	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0110486_33	UniRef90	UniRef90_UPI0015704514	Gp19/Gp15/Gp42 family protein	NA
UHGV-0110486_33	eggNOG-mapper	742742.HMPREF9452_01301	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0110486_33	Pfam	PF09355	NA	Phage_Gp19
UHGV-0110486_33	Structural annotation	PF09355	NA	NA
UHGV-0110486_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0110486_35	UniRef90	UniRef90_A0A174L023	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0110486_35	eggNOG-mapper	205876.Q855V6_9CAUD	peptidase activity	NA
UHGV-0110486_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0110486_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0110486_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0110486_36	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0110486_36	UniRef90	UniRef90_A0A3E4GMR3	NA	NA
UHGV-0110486_36	eggNOG-mapper	1408304.JAHA01000007_gene1323	NA	NA
UHGV-0110486_36	Pfam	PF14265	NA	DUF4355
UHGV-0110486_36	Structural annotation	PF14265	NA	NA
UHGV-0110486_37	PHROG	phrog_1048	NA	unknown function
UHGV-0110486_37	UniRef90	UniRef90_A0A395V4Z5	NA	NA
UHGV-0110486_37	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0110486_37	Pfam	PF11195	NA	DUF2829
UHGV-0110486_37	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0110486_37	Structural annotation	PF11195	NA	NA
UHGV-0110486_38	Structural annotation	PF11344	NA	NA
UHGV-0110486_39	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0110486_39	UniRef90	UniRef90_A0A844E763	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0110486_39	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0110486_39	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0110486_40	PHROG	phrog_104	portal protein	head and packaging
UHGV-0110486_40	UniRef90	UniRef90_A0A174L3Q9	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0110486_40	eggNOG-mapper	1123263.AUKY01000112_gene2059	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0110486_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0110486_40	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0110486_41	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0110486_41	UniRef90	UniRef90_UPI001D0087E2	terminase large subunit	NA
UHGV-0110486_41	eggNOG-mapper	1123263.AUKY01000112_gene2060	phage terminase, large subunit	NA
UHGV-0110486_41	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0110486_41	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0110486_42	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0110486_42	UniRef90	UniRef90_A0A3E4GMG2	HNH endonuclease	NA
UHGV-0110486_42	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA