UHGV-0110502

Genome information

Genome length 38,083 bps

CDS count 54

Completeness 100.00% (complete)

geNomad score 0.9692

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110502
vOTU ID	vOTU-045630
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_250834
BioSample	SAMEA3708835
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9692
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.3
Jumbo phage	No

Genome content
Genome length	38,083 bps
GC content	27.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	87.61%
Average CDS length	619.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110502_3	PHROG	phrog_2329	NA	unknown function
UHGV-0110502_3	UniRef90	UniRef90_UPI001AEB4F95	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0110502_3	Structural annotation	PF04014, NF007312, COG2336	NA	NA
UHGV-0110502_4	UniRef90	UniRef90_A0A5P3XKH8	DNA-binding protein	NA
UHGV-0110502_4	eggNOG-mapper	1292035.H476_3612	NA	NA
UHGV-0110502_4	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0110502_7	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0110502_7	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0110502_7	UniRef90	UniRef90_UPI000E4FDCBB	ParM/StbA family protein	NA
UHGV-0110502_7	eggNOG-mapper	632245.CLP_2671	cell division	NA
UHGV-0110502_7	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0110502_7	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-0110502_7	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-0110502_7	Structural annotation	PF21522, PF17989, MF_02207, NF010498, COG1077	NA	NA
UHGV-0110502_8	PHROG	phrog_7882	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0110502_8	UniRef90	UniRef90_UPI001C0FE5E8	replication initiator protein A	NA
UHGV-0110502_8	eggNOG-mapper	1000570.HMPREF9966_1901	Replication initiator protein A	NA
UHGV-0110502_8	Pfam	PF06970	Replication initiator protein A (RepA) N-terminus	RepA_N
UHGV-0110502_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0110502_10	UniRef90	UniRef90_UPI00129E574F	helix-turn-helix domain-containing protein	NA
UHGV-0110502_10	eggNOG-mapper	1095750.HMPREF9970_1686	Helix-turn-helix XRE-family like proteins	NA
UHGV-0110502_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0110502_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0110502_10	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0110502_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0110502_12	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0110502_12	eggNOG-mapper	999413.HMPREF1094_02028	NA	NA
UHGV-0110502_12	Structural annotation	PF21578	NA	NA
UHGV-0110502_16	KOfam	K06376	spo0E; stage 0 sporulation regulatory protein	NA
UHGV-0110502_16	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0110502_17	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0110502_17	UniRef90	UniRef90_UPI001C0F3BD0	Bro-N domain-containing protein	NA
UHGV-0110502_17	eggNOG-mapper	861454.HMPREF9099_00335	BRO family, N-terminal domain	NA
UHGV-0110502_17	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0110502_17	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0110502_17	COG	COG3617	Prophage antirepressor	NA
UHGV-0110502_17	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0110502_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0110502_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0110502_19	UniRef90	UniRef90_UPI00189AF047	single-stranded DNA-binding protein	NA
UHGV-0110502_19	eggNOG-mapper	445973.CLOBAR_00026	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0110502_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0110502_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0110502_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0110502_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0110502_19	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0110502_26	AcrCatalog	cluster_37489	NA	NA
UHGV-0110502_27	PHROG	phrog_2329	NA	unknown function
UHGV-0110502_27	eggNOG-mapper	1292035.H476_0264	NA	NA
UHGV-0110502_27	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0110502_30	PHROG	phrog_824	NA	unknown function
UHGV-0110502_30	UniRef90	UniRef90_UPI000B821158	VRR-NUC domain-containing protein	NA
UHGV-0110502_30	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0110502_30	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0110502_30	Structural annotation	PF08774	NA	NA
UHGV-0110502_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0110502_31	UniRef90	UniRef90_A0A1C5YDW7	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0110502_32	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0110502_32	UniRef90	UniRef90_A0A2P1S5Y5	HNHc domain-containing protein	NA
UHGV-0110502_32	eggNOG-mapper	536233.CLO_1358	NA	NA
UHGV-0110502_33	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0110502_33	UniRef90	UniRef90_A0A1W1X5Z0	Phage terminase, small subunit, putative, P27 family	NA
UHGV-0110502_33	eggNOG-mapper	1196031.ALEG01000039_gene1811	Phage terminase, small subunit	NA
UHGV-0110502_33	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0110502_33	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0110502_33	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0110502_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0110502_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0110502_34	UniRef90	UniRef90_K6DIF2	Phage terminase large subunit	NA
UHGV-0110502_34	eggNOG-mapper	1196031.ALEG01000039_gene1812	Terminase	NA
UHGV-0110502_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0110502_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0110502_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0110502_34	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0110502_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0110502_35	UniRef90	UniRef90_UPI000A002DC7	phage portal protein	NA
UHGV-0110502_35	eggNOG-mapper	1285586.H131_21312	Portal protein	NA
UHGV-0110502_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0110502_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0110502_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0110502_35	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0110502_36	KOfam	K06904	NA	NA
UHGV-0110502_36	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0110502_36	UniRef90	UniRef90_L1QEZ9	Phage prohead protease, HK97 family	NA
UHGV-0110502_36	eggNOG-mapper	545697.HMPREF0216_01743	Phage prohead protease, HK97 family	NA
UHGV-0110502_36	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0110502_36	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0110502_36	COG	COG3740	Phage head maturation protease	NA
UHGV-0110502_36	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0110502_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0110502_37	UniRef90	UniRef90_A0A2C1KUJ3	Phage major capsid protein	NA
UHGV-0110502_37	eggNOG-mapper	1196031.ALEG01000039_gene1816	Phage capsid family	NA
UHGV-0110502_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0110502_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0110502_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0110502_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0110502_38	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0110502_38	UniRef90	UniRef90_UPI00164B66EB	head-tail connector protein	NA
UHGV-0110502_38	eggNOG-mapper	632245.CLP_2693	Phage gp6-like head-tail connector protein	NA
UHGV-0110502_38	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0110502_38	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0110502_39	UniRef90	UniRef90_UPI000A176131	phage head closure protein	NA
UHGV-0110502_39	eggNOG-mapper	536233.CLO_1365	Phage head-tail joining protein	NA
UHGV-0110502_39	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0110502_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0110502_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0110502_40	UniRef90	UniRef90_C4IGZ7	Phage protein, HK97 gp10 family	NA
UHGV-0110502_40	eggNOG-mapper	632245.CLP_2691	NA	NA
UHGV-0110502_40	Structural annotation	TIGR01725	NA	NA
UHGV-0110502_41	PHROG	phrog_78	tail terminator	connector
UHGV-0110502_41	eggNOG-mapper	536233.CLO_1367	NA	NA
UHGV-0110502_41	Structural annotation	PF05657	NA	NA
UHGV-0110502_42	PHROG	phrog_88	major tail protein	tail
UHGV-0110502_42	UniRef90	UniRef90_A0A6M1WMM9	Phage tail protein	NA
UHGV-0110502_42	eggNOG-mapper	1111121.HMPREF1247_0016	phage major tail protein, phi13 family	NA
UHGV-0110502_42	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0110502_42	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0110502_43	eggNOG-mapper	632245.CLP_2688	NA	NA
UHGV-0110502_43	Structural annotation	PF11836	NA	NA
UHGV-0110502_44	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0110502_44	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0110502_44	UniRef90	UniRef90_UPI0018AC3B12	phage tail tape measure protein	NA
UHGV-0110502_44	eggNOG-mapper	632245.CLP_2687	phage tail tape measure protein	NA
UHGV-0110502_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0110502_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0110502_44	COG	COG5283	Phage-related tail protein	NA
UHGV-0110502_44	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0110502_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0110502_45	UniRef90	UniRef90_UPI0018CF8817	phage tail family protein	NA
UHGV-0110502_45	eggNOG-mapper	1567011.A0A0A7RWN1_9VIRU	Phage tail protein	NA
UHGV-0110502_45	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0110502_45	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0110502_45	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0110502_46	PHROG	phrog_7043	tail protein	tail
UHGV-0110502_46	UniRef90	UniRef90_UPI00189703DD	phage tail protein	NA
UHGV-0110502_46	eggNOG-mapper	1292035.H476_1004	Prophage endopeptidase tail	NA
UHGV-0110502_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0110502_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0110502_46	COG	COG4926	Phage-related protein	NA
UHGV-0110502_46	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0110502_47	PHROG	phrog_16573	NA	unknown function
UHGV-0110502_47	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0110502_47	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0110502_48	PHROG	phrog_13589	NA	unknown function
UHGV-0110502_48	COG	COG4675	Phage tail collar domain	NA
UHGV-0110502_50	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0110502_50	PHROG	phrog_435	endolysin	lysis
UHGV-0110502_50	UniRef90	UniRef90_A0A3A9F2U0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0110502_50	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0110502_50	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0110502_50	Pfam	PF05036	SPOR domain	SPOR
UHGV-0110502_50	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0110502_50	Structural annotation	PF01520, PF05036, MF_02022, MF_00562, TIGR02883, COG0860, COG3147	NA	NA
UHGV-0110502_52	Structural annotation	PF08005, PF19972	NA	NA
UHGV-0110502_54	PHROG	phrog_9829	NA	unknown function