UHGV-0110560

Genome information

Genome length 45,669 bps

CDS count 47

Completeness 83.17% (medium-quality)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110560
vOTU ID	vOTU-027658
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_263831
BioSample	SAMEA3879539
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.67
Jumbo phage	No

Genome content
Genome length	45,669 bps
GC content	40.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.36%
Average CDS length	900.32 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110560_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0110560_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0110560_1	UniRef90	UniRef90_A0A5M5D4U9	Phage integrase SAM-like domain-containing protein	NA
UHGV-0110560_1	eggNOG-mapper	1235803.C825_05373	Belongs to the 'phage' integrase family	NA
UHGV-0110560_1	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0110560_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0110560_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0110560_1	Structural annotation	PF13102, PF17293, MF_01808, NF007246, COG4973	NA	NA
UHGV-0110560_2	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0110560_2	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0110560_2	UniRef90	UniRef90_A0A5M5D583	Beta sliding clamp	NA
UHGV-0110560_2	eggNOG-mapper	484018.BACPLE_00686	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0110560_2	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-0110560_2	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-0110560_2	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0110560_2	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-0110560_2	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0110560_2	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0110560_3	PHROG	phrog_7445	NA	unknown function
UHGV-0110560_3	UniRef90	UniRef90_UPI001C02E32F	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0110560_3	eggNOG-mapper	484018.BACPLE_00685	PcfK-like protein	NA
UHGV-0110560_3	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0110560_3	Structural annotation	PF14058	NA	NA
UHGV-0110560_4	PHROG	phrog_8470	NA	unknown function
UHGV-0110560_4	UniRef90	UniRef90_UPI00189C6D95	PcfJ domain-containing protein	NA
UHGV-0110560_4	eggNOG-mapper	484018.BACPLE_00684	NA	NA
UHGV-0110560_4	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0110560_4	Structural annotation	PF14284	NA	NA
UHGV-0110560_5	PHROG	phrog_23776	NA	unknown function
UHGV-0110560_5	UniRef90	UniRef90_UPI001E55A131	helix-turn-helix domain-containing protein	NA
UHGV-0110560_5	eggNOG-mapper	1347393.HG726021_gene366	DnaD domain protein	NA
UHGV-0110560_5	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0110560_5	Structural annotation	PF01978, MF_01819, NF040939, COG5625	NA	NA
UHGV-0110560_6	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0110560_6	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0110560_6	UniRef90	UniRef90_A0A3E4NBL7	ATP-binding protein	NA
UHGV-0110560_6	eggNOG-mapper	1121097.JCM15093_3228	DNA-dependent DNA replication	NA
UHGV-0110560_6	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0110560_6	Structural annotation	PF01695, MF_01158, NF005304, COG1484	NA	NA
UHGV-0110560_7	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0110560_7	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0110560_7	UniRef90	UniRef90_A0A415M3J1	Replicative DNA helicase	NA
UHGV-0110560_7	eggNOG-mapper	483215.BACFIN_06620	Participates in initiation and elongation during chromosome replication	NA
UHGV-0110560_7	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0110560_7	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0110560_7	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0110560_7	COG	COG0305	Replicative DNA helicase	NA
UHGV-0110560_7	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0110560_8	eggNOG-mapper	1121097.JCM15093_3229	NA	NA
UHGV-0110560_8	Structural annotation	PF16509, TIGR02985, COG1595	NA	NA
UHGV-0110560_9	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0110560_9	UniRef90	UniRef90_E5UUW0	DNA methylase N-4/N-6	NA
UHGV-0110560_9	eggNOG-mapper	1121097.JCM15093_3233	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0110560_9	COG	COG0863	DNA modification methylase	NA
UHGV-0110560_9	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0110560_10	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0110560_10	UniRef90	UniRef90_A0A516LJ12	Putative beta-glucosyl-HMC-alpha-glucosyl-transferase	NA
UHGV-0110560_10	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0110560_10	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0110560_10	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0110560_11	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0110560_11	UniRef90	UniRef90_A0A1E9CD04	Terminase	NA
UHGV-0110560_11	eggNOG-mapper	484018.BACPLE_00673	transposase activity	NA
UHGV-0110560_11	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0110560_11	Structural annotation	PF07141	NA	NA
UHGV-0110560_12	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0110560_12	UniRef90	UniRef90_A0A416VUC6	Terminase large subunit	NA
UHGV-0110560_12	eggNOG-mapper	484018.BACPLE_00672	domain protein	NA
UHGV-0110560_12	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0110560_12	COG	COG5410	NA	NA
UHGV-0110560_12	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0110560_13	eggNOG-mapper	1223410.KN050846_gene329	NA	NA
UHGV-0110560_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-0110560_14	UniRef90	UniRef90_I9PUL9	SPP1 family phage portal protein	NA
UHGV-0110560_14	eggNOG-mapper	1347393.HG726031_gene3967	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0110560_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0110560_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0110560_15	PHROG	phrog_35295	NA	unknown function
UHGV-0110560_15	UniRef90	UniRef90_UPI000E1DEA24	toxin glutamine deamidase domain-containing protein	NA
UHGV-0110560_15	eggNOG-mapper	1123008.KB905702_gene2347	cell adhesion	NA
UHGV-0110560_15	COG	COG2369	NA	NA
UHGV-0110560_15	Structural annotation	PF06152, MF_02210, NF040501, COG1246	NA	NA
UHGV-0110560_16	eggNOG-mapper	1123008.KB905702_gene2346	NA	NA
UHGV-0110560_17	eggNOG-mapper	484018.BACPLE_00667	NA	NA
UHGV-0110560_18	PHROG	phrog_20501	NA	unknown function
UHGV-0110560_18	eggNOG-mapper	1347393.HG726031_gene3971	NA	NA
UHGV-0110560_19	PHROG	phrog_29	major head protein	head and packaging
UHGV-0110560_19	UniRef90	UniRef90_UPI0004AF883C	major capsid protein	NA
UHGV-0110560_19	eggNOG-mapper	1347393.HG726031_gene3972	Phage major capsid protein E	NA
UHGV-0110560_19	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0110560_19	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-0110560_20	eggNOG-mapper	484018.BACPLE_00664	NA	NA
UHGV-0110560_20	Structural annotation	PF20449	NA	NA
UHGV-0110560_21	eggNOG-mapper	484018.BACPLE_00663	NA	NA
UHGV-0110560_21	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0110560_22	PHROG	phrog_5377	NA	unknown function
UHGV-0110560_22	UniRef90	UniRef90_UPI00189E77B6	HK97 gp10 family phage protein	NA
UHGV-0110560_22	eggNOG-mapper	484018.BACPLE_00662	NA	NA
UHGV-0110560_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0110560_23	PHROG	phrog_5597	NA	unknown function
UHGV-0110560_23	eggNOG-mapper	484018.BACPLE_00661	NA	NA
UHGV-0110560_23	Structural annotation	PF09646, COG3167	NA	NA
UHGV-0110560_24	PHROG	phrog_6767	NA	unknown function
UHGV-0110560_24	eggNOG-mapper	484018.BACPLE_00660	NA	NA
UHGV-0110560_24	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0110560_25	eggNOG-mapper	484018.BACPLE_00657	NA	NA
UHGV-0110560_27	PHROG	phrog_32115	NA	unknown function
UHGV-0110560_27	UniRef90	UniRef90_A0A0J9FHT8	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0110560_27	eggNOG-mapper	484018.BACPLE_00656	Phage-related minor tail protein	NA
UHGV-0110560_27	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0110560_27	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0110560_27	COG	COG1511	NA	NA
UHGV-0110560_27	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0110560_28	PHROG	phrog_6305	tail protein	tail
UHGV-0110560_28	eggNOG-mapper	1122971.BAME01000006_gene891	NA	NA
UHGV-0110560_28	Structural annotation	PF05709, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0110560_29	PHROG	phrog_1197	tail protein	tail
UHGV-0110560_29	eggNOG-mapper	1429912.V5R9A1_9CAUD	NA	NA
UHGV-0110560_30	UniRef90	UniRef90_A0A849YN47	NA	NA
UHGV-0110560_30	eggNOG-mapper	411901.BACCAC_01123	NA	NA
UHGV-0110560_30	Pfam	PF14301	NA	DUF4376
UHGV-0110560_30	Structural annotation	PF14301	NA	NA
UHGV-0110560_31	UniRef90	UniRef90_A0A849YDE9	NA	NA
UHGV-0110560_31	eggNOG-mapper	411901.BACCAC_01123	NA	NA
UHGV-0110560_31	Pfam	PF14301	NA	DUF4376
UHGV-0110560_31	Structural annotation	PF14301	NA	NA
UHGV-0110560_32	COG	COG4675	Phage tail collar domain	NA
UHGV-0110560_32	Structural annotation	NF012201	NA	NA
UHGV-0110560_33	PHROG	phrog_15074	NA	unknown function
UHGV-0110560_33	eggNOG-mapper	470145.BACCOP_01120	Phage minor structural protein	NA
UHGV-0110560_33	COG	COG4926	Phage-related protein	NA
UHGV-0110560_33	Structural annotation	PF14594, PF03623, PF01441, TIGR01665, COG4379	NA	NA
UHGV-0110560_34	eggNOG-mapper	1121098.HMPREF1534_01962	NA	NA
UHGV-0110560_36	PHROG	phrog_15037	NA	unknown function
UHGV-0110560_36	UniRef90	UniRef90_UPI001EDCBA4D	phage holin family protein	NA
UHGV-0110560_36	eggNOG-mapper	1347393.HG726021_gene389	NA	NA
UHGV-0110560_36	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0110560_36	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0110560_38	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0110560_38	PHROG	phrog_822	amidase	lysis
UHGV-0110560_38	UniRef90	UniRef90_UPI001C034739	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0110560_38	eggNOG-mapper	1268240.ATFI01000007_gene395	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0110560_38	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0110560_38	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0110560_38	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0110560_39	eggNOG-mapper	1347393.HG726026_gene2630	NA	NA
UHGV-0110560_40	KOfam	K14059	int; integrase	NA
UHGV-0110560_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0110560_40	UniRef90	UniRef90_R6ZUU4	Tyr recombinase domain-containing protein	NA
UHGV-0110560_40	eggNOG-mapper	457424.BFAG_00685	Belongs to the 'phage' integrase family	NA
UHGV-0110560_40	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0110560_40	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0110560_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0110560_40	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0110560_40	Structural annotation	PF00589, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0110560_41	eggNOG-mapper	457424.BFAG_00686	NA	NA
UHGV-0110560_41	Structural annotation	PF20322	NA	NA
UHGV-0110560_42	PHROG	phrog_25262	NA	unknown function
UHGV-0110560_42	UniRef90	UniRef90_A0A0I9UJF9	DNA-binding protein	NA
UHGV-0110560_42	eggNOG-mapper	457424.BFAG_00687	Helix-turn-helix domain	NA
UHGV-0110560_42	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0110560_42	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0110560_42	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0110560_43	UniRef90	UniRef90_UPI001106F727	AAA family ATPase	NA
UHGV-0110560_43	eggNOG-mapper	483216.BACEGG_01022	AAA domain	NA
UHGV-0110560_43	Pfam	PF13481	AAA domain	AAA_25
UHGV-0110560_43	COG	COG0467	RecA-superfamily ATPase, KaiC/GvpD/RAD55 family	NA
UHGV-0110560_43	Structural annotation	PF06745, PF09999, MF_00350, TIGR00416, COG3598	NA	NA
UHGV-0110560_44	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0110560_44	UniRef90	UniRef90_A0A7I9ZYY0	DNA primase	NA
UHGV-0110560_44	eggNOG-mapper	457424.BFAG_00689	DNA primase	NA
UHGV-0110560_44	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0110560_44	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0110560_44	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0110560_44	Structural annotation	PF13362, PF01807, MF_00974, TIGR01391, COG4643	NA	NA
UHGV-0110560_45	eggNOG-mapper	457424.BFAG_00690	NA	NA
UHGV-0110560_47	UniRef90	UniRef90_A0A4P8LX43	NA	NA
UHGV-0110560_47	eggNOG-mapper	483216.BACEGG_01027	NA	NA
UHGV-0110560_47	Pfam	PF13572	NA	DUF4134