UHGV-0110673

Genome information

Genome length 36,327 bps

CDS count 58

Completeness 100.00% (complete)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110673
vOTU ID	vOTU-045633
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_250355
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.92
Jumbo phage	No

Genome content
Genome length	36,327 bps
GC content	44.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.46%
Average CDS length	576.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110673_1	PHROG	phrog_7964	NA	unknown function
UHGV-0110673_1	UniRef90	UniRef90_A0A2V1JRG3	Phage related protein (Fragment)	NA
UHGV-0110673_1	eggNOG-mapper	1094497.BVwin_05860	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	NA
UHGV-0110673_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0110673_3	Structural annotation	COG1965	NA	NA
UHGV-0110673_6	PHROG	phrog_9607	NA	unknown function
UHGV-0110673_6	eggNOG-mapper	1304866.K413DRAFT_4639	NA	NA
UHGV-0110673_6	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0110673_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0110673_9	UniRef90	UniRef90_UPI00130E3D9D	helix-turn-helix domain-containing protein	NA
UHGV-0110673_9	eggNOG-mapper	411459.RUMOBE_00960	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0110673_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0110673_9	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0110673_11	KOfam	K14059	int; integrase	NA
UHGV-0110673_11	PHROG	phrog_1	integrase	integration and excision
UHGV-0110673_11	UniRef90	UniRef90_UPI00156E983E	site-specific integrase	NA
UHGV-0110673_11	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0110673_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0110673_11	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0110673_11	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0110673_12	PHROG	phrog_6745	endolysin	lysis
UHGV-0110673_12	UniRef90	UniRef90_A0A412SB50	SH3b domain-containing protein	NA
UHGV-0110673_12	eggNOG-mapper	1123075.AUDP01000020_gene1533	pathogenesis	NA
UHGV-0110673_12	Pfam	PF05257	CHAP domain	CHAP
UHGV-0110673_12	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0110673_12	COG	COG3942	Surface antigen	NA
UHGV-0110673_12	Structural annotation	PF08230, PF19087	NA	NA
UHGV-0110673_13	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0110673_13	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0110673_13	UniRef90	UniRef90_A0A2N5NUI7	HicB family protein	NA
UHGV-0110673_13	eggNOG-mapper	97139.C824_05961	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0110673_13	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0110673_13	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0110673_13	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0110673_14	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0110673_14	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0110673_14	UniRef90	UniRef90_UPI0004673543	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0110673_14	eggNOG-mapper	1410632.JHWW01000004_gene1545	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0110673_14	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0110673_14	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0110673_14	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0110673_15	PHROG	phrog_1129	holin	lysis
UHGV-0110673_15	UniRef90	UniRef90_UPI001BC82F37	phage holin family protein	NA
UHGV-0110673_15	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0110673_15	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0110673_15	Structural annotation	PF16079	NA	NA
UHGV-0110673_16	PHROG	phrog_1009	NA	unknown function
UHGV-0110673_16	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0110673_17	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0110673_17	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0110673_19	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0110673_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0110673_19	UniRef90	UniRef90_UPI001D05E231	tyrosine-type recombinase/integrase	NA
UHGV-0110673_19	eggNOG-mapper	1235790.C805_00378	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0110673_19	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0110673_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0110673_19	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0110673_19	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0110673_22	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0110673_23	PHROG	phrog_32322	NA	unknown function
UHGV-0110673_23	UniRef90	UniRef90_A0A1C6HQW5	Ig-like_bact domain-containing protein	NA
UHGV-0110673_23	eggNOG-mapper	411461.DORFOR_00725	NA	NA
UHGV-0110673_23	Pfam	PF13754	NA	Big_3_4
UHGV-0110673_23	Structural annotation	PF13754	NA	NA
UHGV-0110673_24	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0110673_24	PHROG	phrog_11157	NA	unknown function
UHGV-0110673_24	UniRef90	UniRef90_A0A415L562	Big_13 domain-containing protein	NA
UHGV-0110673_24	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-0110673_24	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0110673_24	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0110673_24	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-0110673_24	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0110673_24	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0110673_25	PHROG	phrog_19280	NA	unknown function
UHGV-0110673_25	UniRef90	UniRef90_A0A374E9Q0	Collagen-like protein	NA
UHGV-0110673_25	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0110673_25	COG	COG4675	Phage tail collar domain	NA
UHGV-0110673_25	Structural annotation	PF10651, TIGR02781	NA	NA
UHGV-0110673_26	PHROG	phrog_13289	tail protein	tail
UHGV-0110673_26	UniRef90	UniRef90_A0A1Y4EZM1	Prophage_tail domain-containing protein	NA
UHGV-0110673_26	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0110673_26	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0110673_26	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0110673_26	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0110673_27	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0110673_27	UniRef90	UniRef90_A0A3E3AF06	Phage tail protein	NA
UHGV-0110673_27	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0110673_27	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0110673_27	COG	COG4722	Phage-related protein YomH	NA
UHGV-0110673_27	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0110673_28	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-0110673_28	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0110673_28	UniRef90	UniRef90_UPI001A9AEB2C	phage tail tape measure protein	NA
UHGV-0110673_28	eggNOG-mapper	411468.CLOSCI_00194	Phage tail tape measure protein, TP901 family	NA
UHGV-0110673_28	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0110673_28	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0110673_28	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0110673_30	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0110673_30	Structural annotation	PF11836	NA	NA
UHGV-0110673_31	PHROG	phrog_88	major tail protein	tail
UHGV-0110673_31	UniRef90	UniRef90_A0A3D1FL93	Phage tail protein	NA
UHGV-0110673_31	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0110673_31	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-0110673_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0110673_32	UniRef90	UniRef90_R6FMT8	HK97 gp10 family phage protein	NA
UHGV-0110673_32	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0110673_32	Structural annotation	TIGR01725	NA	NA
UHGV-0110673_33	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0110673_33	Structural annotation	PF05657	NA	NA
UHGV-0110673_34	PHROG	phrog_19734	NA	unknown function
UHGV-0110673_34	UniRef90	UniRef90_A0A3R6AW46	Head-tail adaptor protein	NA
UHGV-0110673_34	eggNOG-mapper	33035.JPJF01000039_gene275	NA	NA
UHGV-0110673_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0110673_35	PHROG	phrog_2550	NA	unknown function
UHGV-0110673_35	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0110673_35	eggNOG-mapper	1235798.C817_04586	NA	NA
UHGV-0110673_35	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0110673_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0110673_36	UniRef90	UniRef90_A0A143XZI6	Phage capsid family protein	NA
UHGV-0110673_36	eggNOG-mapper	1235798.C817_04585	phage major capsid protein, HK97 family	NA
UHGV-0110673_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0110673_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0110673_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0110673_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0110673_37	KOfam	K06904	NA	NA
UHGV-0110673_37	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0110673_37	UniRef90	UniRef90_A0A143Y1N9	Caudovirus prohead protease	NA
UHGV-0110673_37	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-0110673_37	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0110673_37	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0110673_37	COG	COG3740	Phage head maturation protease	NA
UHGV-0110673_37	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0110673_38	PHROG	phrog_12	portal protein	head and packaging
UHGV-0110673_38	UniRef90	UniRef90_A0A3D1FM97	Phage portal protein	NA
UHGV-0110673_38	eggNOG-mapper	33035.JPJF01000039_gene271	Phage portal protein, HK97 family	NA
UHGV-0110673_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0110673_38	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0110673_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0110673_38	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0110673_39	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0110673_39	UniRef90	UniRef90_A0A3D1FL87	Terminase	NA
UHGV-0110673_39	eggNOG-mapper	1235798.C817_04582	Phage Terminase	NA
UHGV-0110673_39	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0110673_39	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0110673_39	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0110673_39	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0110673_40	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0110673_40	UniRef90	UniRef90_A0A1Y4FAU6	Terminase	NA
UHGV-0110673_40	eggNOG-mapper	1235798.C817_04581	Phage terminase, small subunit	NA
UHGV-0110673_40	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0110673_40	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0110673_42	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0110673_42	UniRef90	UniRef90_A0A412UTE1	HNH endonuclease	NA
UHGV-0110673_42	eggNOG-mapper	33035.JPJF01000113_gene2099	HNH nucleases	NA
UHGV-0110673_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0110673_42	Structural annotation	TIGR02646	NA	NA
UHGV-0110673_43	UniRef90	UniRef90_A0A416J0I8	Chemotaxis protein	NA
UHGV-0110673_43	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0110673_43	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0110673_45	KOfam	K02405	fliA, whiG; RNA polymerase sigma factor FliA	NA
UHGV-0110673_45	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0110673_45	UniRef90	UniRef90_A0A413B185	NA	NA
UHGV-0110673_45	eggNOG-mapper	1235792.C808_03069	sigma factor activity	NA
UHGV-0110673_45	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0110673_45	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0110673_45	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0110673_46	PHROG	phrog_19011	NA	unknown function
UHGV-0110673_46	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0110673_48	eggNOG-mapper	1235799.C818_02650	NA	NA
UHGV-0110673_51	PHROG	phrog_7566	NA	unknown function
UHGV-0110673_51	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0110673_54	PHROG	phrog_15077	NA	unknown function
UHGV-0110673_54	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0110673_54	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-0110673_54	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0110673_55	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0110673_55	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0110673_55	UniRef90	UniRef90_A0A173WRS0	Ribonuclease H	NA
UHGV-0110673_55	eggNOG-mapper	411459.RUMOBE_00952	RNase H	NA
UHGV-0110673_55	Pfam	PF00075	RNase H	RNase_H
UHGV-0110673_55	COG	COG0328	Ribonuclease HI	NA
UHGV-0110673_55	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0110673_56	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0110673_56	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0110673_56	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0110673_56	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0110673_58	PHROG	phrog_7964	NA	unknown function
UHGV-0110673_58	eggNOG-mapper	887929.HMP0721_1276	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0110673_58	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0110673_58	Structural annotation	PF00132	NA	NA