UHGV-0110692

Genome information

Genome length 49,086 bps

CDS count 71

Completeness 91.78% (high-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110692
vOTU ID	vOTU-065181
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_246524
BioSample	SAMEA3708767
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.78% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.08
Jumbo phage	No

Genome content
Genome length	49,086 bps
GC content	44.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	89.72%
Average CDS length	625.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110692_1	KOfam	K01972	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	NA
UHGV-0110692_1	PHROG	phrog_3869	NAD-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0110692_1	UniRef90	UniRef90_A6LA55	DNA ligase	NA
UHGV-0110692_1	eggNOG-mapper	435591.BDI_0799	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	NA
UHGV-0110692_1	Pfam	PF01653	NAD-dependent DNA ligase adenylation domain	DNA_ligase_aden
UHGV-0110692_1	Pfam	PF03120	NAD-dependent DNA ligase OB-fold domain	DNA_ligase_OB
UHGV-0110692_1	Pfam	PF03119	NAD-dependent DNA ligase C4 zinc finger domain	DNA_ligase_ZBD
UHGV-0110692_1	Pfam	PF12826	Helix-hairpin-helix motif	HHH_2
UHGV-0110692_1	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0110692_1	NCBIFam	NF005932.1	NAD-dependent DNA ligase LigA	NA
UHGV-0110692_1	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0110692_1	HAMAP	MF_01588	DNA ligase [ligA]	NA
UHGV-0110692_1	Structural annotation	PF01653, PF03120, PF00533, MF_01588, NF005932, COG0272	NA	NA
UHGV-0110692_2	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0110692_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0110692_2	UniRef90	UniRef90_UPI000EFB118D	site-specific integrase	NA
UHGV-0110692_2	eggNOG-mapper	1347393.HG726024_gene2896	Phage integrase SAM-like domain	NA
UHGV-0110692_2	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0110692_2	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0110692_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0110692_2	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0110692_4	UniRef90	UniRef90_UPI000EFC0AAB	DNA-binding protein	NA
UHGV-0110692_5	UniRef90	UniRef90_UPI0011C3B561	NA	NA
UHGV-0110692_6	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0110692_6	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0110692_6	UniRef90	UniRef90_UPI000E392D0B	HNH endonuclease	NA
UHGV-0110692_6	eggNOG-mapper	1268240.ATFI01000007_gene425	HNH endonuclease	NA
UHGV-0110692_6	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0110692_6	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0110692_8	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0110692_8	UniRef90	UniRef90_UPI0015FA7366	phage terminase small subunit P27 family	NA
UHGV-0110692_8	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0110692_8	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0110692_8	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0110692_8	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0110692_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0110692_9	UniRef90	UniRef90_UPI000EFAEBC4	terminase large subunit	NA
UHGV-0110692_9	eggNOG-mapper	1347393.HG726026_gene2611	Phage Terminase	NA
UHGV-0110692_9	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0110692_9	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0110692_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0110692_9	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0110692_10	PHROG	phrog_12	portal protein	head and packaging
UHGV-0110692_10	UniRef90	UniRef90_UPI000EFC0CE6	phage portal protein	NA
UHGV-0110692_10	eggNOG-mapper	1347393.HG726026_gene2612	Phage portal protein	NA
UHGV-0110692_10	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0110692_10	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0110692_10	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0110692_10	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0110692_11	KOfam	K06904	NA	NA
UHGV-0110692_11	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0110692_11	UniRef90	UniRef90_UPI000F00EFDD	HK97 family phage prohead protease	NA
UHGV-0110692_11	eggNOG-mapper	908937.Prede_1354	Caudovirus prohead serine protease	NA
UHGV-0110692_11	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0110692_11	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0110692_11	COG	COG3740	Phage head maturation protease	NA
UHGV-0110692_11	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0110692_12	PHROG	phrog_617	major head protein	head and packaging
UHGV-0110692_12	UniRef90	UniRef90_UPI0018AC12B5	phage major capsid protein	NA
UHGV-0110692_12	eggNOG-mapper	1347393.HG726026_gene2614	Phage capsid family	NA
UHGV-0110692_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0110692_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0110692_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0110692_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0110692_13	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0110692_13	UniRef90	UniRef90_UPI0018ABD3B6	head-tail connector protein	NA
UHGV-0110692_13	eggNOG-mapper	1268240.ATFI01000007_gene417	Phage gp6-like head-tail connector protein	NA
UHGV-0110692_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0110692_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0110692_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0110692_14	PHROG	phrog_25	head closure Hc1	connector
UHGV-0110692_14	UniRef90	UniRef90_UPI000EFB77D5	phage head closure protein	NA
UHGV-0110692_14	eggNOG-mapper	1347393.HG726020_gene893	Phage head-tail joining protein	NA
UHGV-0110692_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0110692_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0110692_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0110692_15	eggNOG-mapper	1347393.HG726020_gene892	NA	NA
UHGV-0110692_15	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0110692_16	UniRef90	UniRef90_UPI000F00A35C	NA	NA
UHGV-0110692_16	eggNOG-mapper	1347393.HG726020_gene891	NA	NA
UHGV-0110692_16	Pfam	PF11367	NA	DUF3168
UHGV-0110692_16	Structural annotation	PF11367, COG5003	NA	NA
UHGV-0110692_17	PHROG	phrog_1407	major tail protein	tail
UHGV-0110692_17	UniRef90	UniRef90_UPI0018AC0466	phage tail tube protein	NA
UHGV-0110692_17	eggNOG-mapper	908937.Prede_1348	Phage tail tube protein	NA
UHGV-0110692_17	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0110692_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0110692_19	PHROG	phrog_16333	NA	unknown function
UHGV-0110692_20	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0110692_20	UniRef90	UniRef90_UPI000EFBF3FC	phage tail tape measure protein	NA
UHGV-0110692_20	eggNOG-mapper	1197719.A464_1008	tail length tape measure	NA
UHGV-0110692_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0110692_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0110692_20	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0110692_20	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0110692_21	PHROG	phrog_30639	NA	unknown function
UHGV-0110692_21	eggNOG-mapper	411901.BACCAC_00723	NA	NA
UHGV-0110692_21	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0110692_22	PHROG	phrog_22546	NA	unknown function
UHGV-0110692_22	eggNOG-mapper	886379.AEWI01000001_gene1727	Phage minor structural protein	NA
UHGV-0110692_22	COG	COG4926	Phage-related protein	NA
UHGV-0110692_22	Structural annotation	PF03944, PF18141	NA	NA
UHGV-0110692_23	eggNOG-mapper	484018.BACPLE_00652	NA	NA
UHGV-0110692_25	eggNOG-mapper	1235803.C825_03435	translation initiation factor activity	NA
UHGV-0110692_25	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0110692_26	PHROG	phrog_5302	tail protein	tail
UHGV-0110692_26	eggNOG-mapper	445970.ALIPUT_02628	NA	NA
UHGV-0110692_26	Structural annotation	PF01105	NA	NA
UHGV-0110692_27	PHROG	phrog_11557	NA	unknown function
UHGV-0110692_27	eggNOG-mapper	445970.ALIPUT_02625	NA	NA
UHGV-0110692_29	PHROG	phrog_873	endolysin	head and packaging
UHGV-0110692_29	UniRef90	UniRef90_A0A7K0H713	Structural protein P5	NA
UHGV-0110692_29	eggNOG-mapper	435591.BDI_0904	NA	NA
UHGV-0110692_30	PHROG	phrog_32732	NA	unknown function
UHGV-0110692_30	UniRef90	UniRef90_R6YL95	Conserved domain protein	NA
UHGV-0110692_30	eggNOG-mapper	762982.HMPREF9442_01182	NA	NA
UHGV-0110692_30	dbAPIS	APIS052	NA	NA
UHGV-0110692_30	Structural annotation	PF10458	NA	NA
UHGV-0110692_31	PHROG	phrog_26448	NA	unknown function
UHGV-0110692_31	eggNOG-mapper	1235803.C825_05324	NA	NA
UHGV-0110692_31	Pfam	PF20647	NA	DUF6808
UHGV-0110692_31	Structural annotation	PF20647	NA	NA
UHGV-0110692_32	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0110692_33	PHROG	phrog_3364	NA	unknown function
UHGV-0110692_33	UniRef90	UniRef90_A0A3R6D3K2	ATP-binding protein	NA
UHGV-0110692_33	eggNOG-mapper	1538644.KO02_22420	NA	NA
UHGV-0110692_33	Structural annotation	PF02518, MF_00637, TIGR01925, COG2172	NA	NA
UHGV-0110692_34	UniRef90	UniRef90_UPI000481D884	NA	NA
UHGV-0110692_36	UniRef90	UniRef90_UPI000E481466	NA	NA
UHGV-0110692_37	UniRef90	UniRef90_A0A7M1RVK1	Nuclear pore complex-like protein	NA
UHGV-0110692_42	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0110692_42	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0110692_42	UniRef90	UniRef90_UPI000E3A1D24	phage regulatory protein/antirepressor Ant	NA
UHGV-0110692_42	eggNOG-mapper	742727.HMPREF9447_04841	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0110692_42	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0110692_42	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0110692_42	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0110692_42	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0110692_43	UniRef90	UniRef90_UPI001C378A79	antA/AntB antirepressor family protein	NA
UHGV-0110692_43	eggNOG-mapper	1235803.C825_02646	BRO family, N-terminal domain	NA
UHGV-0110692_43	COG	COG3617	Prophage antirepressor	NA
UHGV-0110692_43	Structural annotation	COG3561	NA	NA
UHGV-0110692_44	UniRef90	UniRef90_UPI000EFD882F	NA	NA
UHGV-0110692_44	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-0110692_44	Pfam	PF04448	NA	DUF551
UHGV-0110692_45	PHROG	phrog_9236	pyrophosphatase	other
UHGV-0110692_45	eggNOG-mapper	657309.BXY_08510	NA	NA
UHGV-0110692_45	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0110692_47	PHROG	phrog_8684	NA	unknown function
UHGV-0110692_47	UniRef90	UniRef90_D0TA40	YopX domain-containing protein	NA
UHGV-0110692_47	eggNOG-mapper	435591.BDI_0866	YopX protein	NA
UHGV-0110692_47	Pfam	PF09643	YopX protein	YopX
UHGV-0110692_47	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0110692_47	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0110692_49	UniRef90	UniRef90_F3PFX8	Conserved domain protein	NA
UHGV-0110692_49	eggNOG-mapper	483216.BACEGG_01967	NA	NA
UHGV-0110692_52	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0110692_52	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0110692_52	UniRef90	UniRef90_UPI0012B16C4E	antA/AntB antirepressor family protein	NA
UHGV-0110692_52	eggNOG-mapper	411901.BACCAC_01209	BRO family, N-terminal domain	NA
UHGV-0110692_52	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0110692_52	COG	COG3617	Prophage antirepressor	NA
UHGV-0110692_52	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0110692_54	KOfam	K02078	acpP; acyl carrier protein	NA
UHGV-0110692_54	PHROG	phrog_5934	acyl carrier protein	moron, auxiliary metabolic gene and host takeover
UHGV-0110692_54	UniRef90	UniRef90_A0A496CV39	Acyl carrier protein	NA
UHGV-0110692_54	eggNOG-mapper	324925.Ppha_0196	Carrier of the growing fatty acid chain in fatty acid biosynthesis	NA
UHGV-0110692_54	Pfam	PF00550	Phosphopantetheine attachment site	PP-binding
UHGV-0110692_54	NCBIFam	NF002148.0	acyl carrier protein	NA
UHGV-0110692_54	COG	COG0236	Acyl carrier protein	NA
UHGV-0110692_54	HAMAP	MF_01217	Acyl carrier protein [acpP]	NA
UHGV-0110692_54	Structural annotation	PF14573, MF_01217, NF002150, COG0236	NA	NA
UHGV-0110692_55	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0110692_55	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0110692_55	UniRef90	UniRef90_A6LAB6	Cytosine-specific methyltransferase	NA
UHGV-0110692_55	eggNOG-mapper	435591.BDI_0861	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0110692_55	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0110692_55	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0110692_55	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0110692_55	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0110692_56	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0110692_56	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0110692_56	UniRef90	UniRef90_UPI000F00EADB	replicative DNA helicase	NA
UHGV-0110692_56	eggNOG-mapper	709991.Odosp_0763	Participates in initiation and elongation during chromosome replication	NA
UHGV-0110692_56	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0110692_56	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0110692_56	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0110692_56	COG	COG0305	Replicative DNA helicase	NA
UHGV-0110692_56	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0110692_57	PHROG	phrog_16304	NA	unknown function
UHGV-0110692_57	UniRef90	UniRef90_UPI000E3A7EEB	NA	NA
UHGV-0110692_57	eggNOG-mapper	742726.HMPREF9448_02012	HNH endonuclease	NA
UHGV-0110692_57	Pfam	PF19808	NA	DUF6291
UHGV-0110692_57	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0110692_57	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0110692_61	UniRef90	UniRef90_A0A7K0H746	Acetyltransferase	NA
UHGV-0110692_61	eggNOG-mapper	1358423.N180_03020	NA	NA
UHGV-0110692_62	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0110692_62	UniRef90	UniRef90_A0A412WPV2	Recombinase	NA
UHGV-0110692_62	eggNOG-mapper	742725.HMPREF9450_02079	NA	NA
UHGV-0110692_62	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0110692_62	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0110692_62	Structural annotation	PF05766	NA	NA
UHGV-0110692_63	PHROG	phrog_11501	NA	unknown function
UHGV-0110692_63	UniRef90	UniRef90_F3QQV3	Conserved domain protein	NA
UHGV-0110692_63	eggNOG-mapper	1347393.HG726021_gene515	NA	NA
UHGV-0110692_63	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0110692_64	PHROG	phrog_12688	NA	unknown function
UHGV-0110692_64	eggNOG-mapper	1347393.HG726021_gene516	NA	NA
UHGV-0110692_64	Structural annotation	PF10382, TIGR02276	NA	NA
UHGV-0110692_65	Structural annotation	PF00401	NA	NA
UHGV-0110692_66	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0110692_66	UniRef90	UniRef90_UPI00164A9C4B	NA	NA
UHGV-0110692_66	eggNOG-mapper	742767.HMPREF9456_02058	NA	NA
UHGV-0110692_66	Pfam	PF07105	NA	DUF1367
UHGV-0110692_66	Structural annotation	PF07105	NA	NA
UHGV-0110692_67	UniRef90	UniRef90_F3QQV6	Conserved domain protein	NA
UHGV-0110692_67	eggNOG-mapper	762982.HMPREF9442_00549	NA	NA
UHGV-0110692_69	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0110692_69	UniRef90	UniRef90_A0A173VJD5	ERF superfamily	NA
UHGV-0110692_69	eggNOG-mapper	1408428.JNJP01000005_gene5	ERF superfamily	NA
UHGV-0110692_69	Pfam	PF04404	ERF superfamily	ERF
UHGV-0110692_69	Structural annotation	PF04404	NA	NA
UHGV-0110692_71	PHROG	phrog_27197	NA	unknown function
UHGV-0110692_71	eggNOG-mapper	886882.PPSC2_p0048	regulation of DNA-templated transcription, elongation	NA
UHGV-0110692_71	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0110692_71	Structural annotation	NF007410	NA	NA