UHGV-0110870

Genome information

Genome length 35,255 bps

CDS count 54

Completeness 99.28% (high-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110870
vOTU ID	vOTU-009383
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_237191
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.28% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.02
Jumbo phage	No

Genome content
Genome length	35,255 bps
GC content	40.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	93.20%
Average CDS length	614.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110870_2	PHROG	phrog_199	holin	lysis
UHGV-0110870_2	UniRef90	UniRef90_B0G4J9	Toxin secretion/phage lysis holin	NA
UHGV-0110870_2	eggNOG-mapper	411461.DORFOR_01186	Bacteriophage holin family	NA
UHGV-0110870_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0110870_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0110870_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0110870_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0110870_3	UniRef90	UniRef90_A0A3E5EH69	ArsR family transcriptional regulator	NA
UHGV-0110870_3	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0110870_3	Structural annotation	PF01978, MF_01909, NF033788, COG1675	NA	NA
UHGV-0110870_4	PHROG	phrog_16164	NA	unknown function
UHGV-0110870_4	UniRef90	UniRef90_UPI001C8CB472	BppU family phage baseplate upper protein	NA
UHGV-0110870_4	eggNOG-mapper	1033732.CAHI01000035_gene2712	NA	NA
UHGV-0110870_6	PHROG	phrog_13289	tail protein	tail
UHGV-0110870_6	UniRef90	UniRef90_R9MV22	Phage minor structural protein	NA
UHGV-0110870_6	eggNOG-mapper	1235798.C817_04594	Prophage endopeptidase tail	NA
UHGV-0110870_6	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0110870_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0110870_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0110870_6	COG	COG4926	Phage-related protein	NA
UHGV-0110870_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0110870_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0110870_7	UniRef90	UniRef90_A0A3E5GPI4	Phage tail protein	NA
UHGV-0110870_7	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0110870_7	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0110870_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0110870_7	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0110870_8	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0110870_8	UniRef90	UniRef90_A0A3E5GPN2	PhageMin_Tail domain-containing protein	NA
UHGV-0110870_8	eggNOG-mapper	1235798.C817_04592	Phage-related minor tail protein	NA
UHGV-0110870_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0110870_8	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0110870_8	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0110870_9	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0110870_9	Structural annotation	PF11836	NA	NA
UHGV-0110870_10	PHROG	phrog_88	major tail protein	tail
UHGV-0110870_10	UniRef90	UniRef90_A0A3E5GPH8	Phage tail protein	NA
UHGV-0110870_10	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0110870_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0110870_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0110870_11	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0110870_11	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0110870_11	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0110870_11	Structural annotation	TIGR01725	NA	NA
UHGV-0110870_12	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0110870_12	Structural annotation	PF05657	NA	NA
UHGV-0110870_13	PHROG	phrog_19734	NA	unknown function
UHGV-0110870_13	UniRef90	UniRef90_A0A3E5GR03	Head-tail adaptor protein	NA
UHGV-0110870_13	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0110870_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0110870_14	PHROG	phrog_2550	NA	unknown function
UHGV-0110870_14	eggNOG-mapper	1235798.C817_04586	NA	NA
UHGV-0110870_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0110870_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0110870_15	UniRef90	UniRef90_A0A3E5GPH2	Phage major capsid protein	NA
UHGV-0110870_15	eggNOG-mapper	1235798.C817_04585	phage major capsid protein, HK97 family	NA
UHGV-0110870_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0110870_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0110870_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0110870_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0110870_16	KOfam	K06904	NA	NA
UHGV-0110870_16	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0110870_16	UniRef90	UniRef90_A0A3E5GPG5	HK97 family phage prohead protease	NA
UHGV-0110870_16	eggNOG-mapper	33035.JPJF01000039_gene272	Caudovirus prohead serine protease	NA
UHGV-0110870_16	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0110870_16	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0110870_16	COG	COG3740	Phage head maturation protease	NA
UHGV-0110870_16	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0110870_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0110870_17	UniRef90	UniRef90_A0A3E5GPS9	Phage portal protein	NA
UHGV-0110870_17	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-0110870_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0110870_17	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0110870_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0110870_17	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0110870_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0110870_18	UniRef90	UniRef90_A0A3E5GPH3	Terminase large subunit	NA
UHGV-0110870_18	eggNOG-mapper	1235798.C817_04582	Phage Terminase	NA
UHGV-0110870_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0110870_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0110870_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0110870_18	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0110870_19	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0110870_19	UniRef90	UniRef90_UPI001A918125	P27 family phage terminase small subunit	NA
UHGV-0110870_19	eggNOG-mapper	913865.DOT_5637	phage terminase small subunit	NA
UHGV-0110870_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0110870_19	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0110870_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0110870_20	UniRef90	UniRef90_A0A412UTE1	HNH endonuclease	NA
UHGV-0110870_20	eggNOG-mapper	1235798.C817_04580	HNH nucleases	NA
UHGV-0110870_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0110870_21	PHROG	phrog_11237	NA	unknown function
UHGV-0110870_21	eggNOG-mapper	411461.DORFOR_01161	NA	NA
UHGV-0110870_25	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0110870_25	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0110870_25	UniRef90	UniRef90_UPI0015711440	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0110870_25	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-0110870_25	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0110870_25	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0110870_25	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0110870_26	eggNOG-mapper	411461.DORFOR_01156	NA	NA
UHGV-0110870_27	PHROG	phrog_924	NA	unknown function
UHGV-0110870_27	UniRef90	UniRef90_UPI001D087239	NA	NA
UHGV-0110870_27	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-0110870_27	Pfam	PF04448	NA	DUF551
UHGV-0110870_30	UniRef90	UniRef90_A0A8B3AJ48	AsnC family protein	NA
UHGV-0110870_30	eggNOG-mapper	97139.C824_05982	NA	NA
UHGV-0110870_30	Structural annotation	PF00196, TIGR04381, COG2771	NA	NA
UHGV-0110870_31	PHROG	phrog_38110	NA	unknown function
UHGV-0110870_32	PHROG	phrog_31991	NA	unknown function
UHGV-0110870_33	PHROG	phrog_24386	NA	unknown function
UHGV-0110870_33	eggNOG-mapper	411461.DORFOR_01147	COG NOG28949 non supervised orthologous group	NA
UHGV-0110870_33	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0110870_33	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-0110870_34	eggNOG-mapper	592010.GCWU000182_001449	Type I restriction modification DNA specificity domain	NA
UHGV-0110870_34	Structural annotation	PF01420, COG0732	NA	NA
UHGV-0110870_35	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0110870_35	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0110870_35	UniRef90	UniRef90_A0A3E5GPR3	Type I restriction endonuclease subunit M	NA
UHGV-0110870_35	eggNOG-mapper	592010.GCWU000182_001448	HsdM N-terminal domain	NA
UHGV-0110870_35	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0110870_35	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0110870_35	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0110870_35	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0110870_36	Structural annotation	PF08169, MF_01549, TIGR00405	NA	NA
UHGV-0110870_37	PHROG	phrog_7566	NA	unknown function
UHGV-0110870_37	eggNOG-mapper	411461.DORFOR_01145	NA	NA
UHGV-0110870_38	PHROG	phrog_15077	NA	unknown function
UHGV-0110870_38	UniRef90	UniRef90_A0A7M3SA13	NA	NA
UHGV-0110870_38	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0110870_38	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0110870_39	PHROG	phrog_8470	NA	unknown function
UHGV-0110870_39	UniRef90	UniRef90_UPI001D0719D3	PcfJ domain-containing protein	NA
UHGV-0110870_39	eggNOG-mapper	742740.HMPREF9474_03121	PcfJ-like protein	NA
UHGV-0110870_39	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0110870_39	Structural annotation	PF14284	NA	NA
UHGV-0110870_40	UniRef90	UniRef90_UPI001D081332	PcfK-like family protein	NA
UHGV-0110870_40	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-0110870_40	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0110870_41	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0110870_41	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0110870_41	UniRef90	UniRef90_A0A1M6MV17	Ribonuclease HI	NA
UHGV-0110870_41	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0110870_41	COG	COG0328	Ribonuclease HI	NA
UHGV-0110870_41	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0110870_43	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0110870_43	eggNOG-mapper	411461.DORFOR_01138	NA	NA
UHGV-0110870_43	Structural annotation	PF01446	NA	NA
UHGV-0110870_45	PHROG	phrog_36464	NA	unknown function
UHGV-0110870_45	eggNOG-mapper	411461.DORFOR_01136	NA	NA
UHGV-0110870_45	Structural annotation	PF09035	NA	NA
UHGV-0110870_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0110870_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0110870_49	UniRef90	UniRef90_A0A413QMZ1	XRE family transcriptional regulator	NA
UHGV-0110870_49	eggNOG-mapper	471875.RUMLAC_01755	sequence-specific DNA binding	NA
UHGV-0110870_49	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0110870_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0110870_49	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0110870_51	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0110870_51	UniRef90	UniRef90_B0G4E1	DNA-binding helix-turn-helix protein	NA
UHGV-0110870_51	eggNOG-mapper	411461.DORFOR_01128	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0110870_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0110870_51	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0110870_52	PHROG	phrog_32721	NA	unknown function
UHGV-0110870_52	eggNOG-mapper	1391646.AVSU01000065_gene2762	NA	NA
UHGV-0110870_52	Structural annotation	PF21223, TIGR04209	NA	NA
UHGV-0110870_53	KOfam	K14059	int; integrase	NA
UHGV-0110870_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0110870_53	UniRef90	UniRef90_B0G4D9	Site-specific recombinase, phage integrase family	NA
UHGV-0110870_53	eggNOG-mapper	411461.DORFOR_01126	Phage integrase family	NA
UHGV-0110870_53	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0110870_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0110870_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0110870_53	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA