UHGV-0110928

Genome information

Genome length 13,564 bps

CDS count 21

Completeness 99.42% (high-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110928
vOTU ID	vOTU-070742
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_245286
BioSample	SAMEA3708726
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.42% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.97
Jumbo phage	No

Genome content
Genome length	13,564 bps
GC content	42.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	96.07%
Average CDS length	628.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110928_4	PHROG	phrog_2038	upper collar connector	connector
UHGV-0110928_4	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-0110928_4	eggNOG-mapper	1128071.G9J3I3_9CAUD	Phage Connector (GP10)	NA
UHGV-0110928_4	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0110928_4	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0110928_5	PHROG	phrog_11037	NA	unknown function
UHGV-0110928_5	UniRef90	UniRef90_A0A843FUI9	Phage_lysozyme2 domain-containing protein	NA
UHGV-0110928_5	eggNOG-mapper	1235796.C815_01287	pathogenesis	NA
UHGV-0110928_5	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0110928_5	COG	COG3942	Surface antigen	NA
UHGV-0110928_5	Structural annotation	PF18013	NA	NA
UHGV-0110928_6	Structural annotation	PF20934	NA	NA
UHGV-0110928_7	UniRef90	UniRef90_A0A843HBI5	Ig-like domain-containing protein	NA
UHGV-0110928_7	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0110928_10	PHROG	phrog_18955	NA	unknown function
UHGV-0110928_10	UniRef90	UniRef90_UPI001C1061EB	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0110928_10	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0110928_10	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0110928_10	COG	COG3108	NA	NA
UHGV-0110928_10	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0110928_12	PHROG	phrog_2150	terminase	head and packaging
UHGV-0110928_12	UniRef90	UniRef90_A0A843GFY2	Phage DNA encapsidation protein	NA
UHGV-0110928_12	eggNOG-mapper	1162304.I3PV13_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0110928_12	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0110928_12	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0110928_13	Structural annotation	PF17427	NA	NA
UHGV-0110928_15	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0110928_15	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0110928_15	UniRef90	UniRef90_A0A843GHP1	DNA-directed DNA polymerase	NA
UHGV-0110928_15	eggNOG-mapper	1162305.I3PV37_9CAUD	nucleotide binding	NA
UHGV-0110928_15	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0110928_15	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0110928_20	UniRef90	UniRef90_A0A415TKX9	Glyco_hydro_70 domain-containing protein	NA
UHGV-0110928_20	eggNOG-mapper	483218.BACPEC_01783	NA	NA