UHGV-0110932

Genome information

Genome length 17,913 bps

CDS count 32

Completeness 90.24% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110932
vOTU ID	vOTU-059740
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_245280
BioSample	SAMEA3708726
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.24% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.77
Jumbo phage	No

Genome content
Genome length	17,913 bps
GC content	50.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	93.56%
Average CDS length	527.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110932_6	PHROG	phrog_236	nucleotide kinase	other
UHGV-0110932_6	UniRef90	UniRef90_A0A7K3XYV9	NA	NA
UHGV-0110932_6	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-0110932_6	Pfam	PF11753	NA	DUF3310
UHGV-0110932_10	Structural annotation	PF17548	NA	NA
UHGV-0110932_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0110932_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0110932_11	UniRef90	UniRef90_UPI001C3B31E8	Single-stranded DNA-binding protein	NA
UHGV-0110932_11	eggNOG-mapper	1504822.CCNO01000008_gene2043	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0110932_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0110932_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0110932_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0110932_11	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0110932_12	Structural annotation	PF05435	NA	NA
UHGV-0110932_13	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0110932_13	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0110932_13	UniRef90	UniRef90_A0A843JIE3	DNA-directed DNA polymerase (Fragment)	NA
UHGV-0110932_13	eggNOG-mapper	12345.Q96206_BPGA1	nucleotide binding	NA
UHGV-0110932_13	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0110932_13	Structural annotation	PF03175, MF_01899, TIGR01388	NA	NA
UHGV-0110932_14	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0110932_14	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0110932_14	UniRef90	UniRef90_A0A2V2GAI8	DNA polymerase	NA
UHGV-0110932_14	eggNOG-mapper	12345.Q96206_BPGA1	nucleotide binding	NA
UHGV-0110932_14	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0110932_18	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0110932_18	UniRef90	UniRef90_A0A345MZG3	Major head protein	NA
UHGV-0110932_18	eggNOG-mapper	12345.CAPSD_BPGA1	T=13 icosahedral viral capsid	NA
UHGV-0110932_18	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0110932_19	PHROG	phrog_2248	tail protein	tail
UHGV-0110932_19	UniRef90	UniRef90_A0A843HKP3	Caud_tail_N domain-containing protein	NA
UHGV-0110932_19	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0110932_19	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0110932_19	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0110932_19	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0110932_20	PHROG	phrog_2038	upper collar connector	connector
UHGV-0110932_20	UniRef90	UniRef90_Q37891	Portal protein	NA
UHGV-0110932_20	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0110932_20	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0110932_20	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0110932_22	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0110932_22	UniRef90	UniRef90_A6XAD8	Lower collar	NA
UHGV-0110932_22	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0110932_25	Pfam	PF13229	Right handed beta helix region	Beta_helix
UHGV-0110932_26	KOfam	K07273	acm; lysozyme	NA
UHGV-0110932_26	PHROG	phrog_291	endolysin	lysis
UHGV-0110932_26	UniRef90	UniRef90_J9FII9	Glycoside hydrolase, family 25 (Fragment)	NA
UHGV-0110932_26	eggNOG-mapper	1437608.BBIA_0613	Glycosyl hydrolases family 25	NA
UHGV-0110932_26	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0110932_26	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0110932_26	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0110932_28	Structural annotation	PF08931	NA	NA
UHGV-0110932_30	PHROG	phrog_2150	terminase	head and packaging
UHGV-0110932_30	UniRef90	UniRef90_A0A843FWE9	Phage DNA encapsidation protein	NA
UHGV-0110932_30	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0110932_30	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0110932_30	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0110932_31	PHROG	phrog_14030	NA	unknown function
UHGV-0110932_31	UniRef90	UniRef90_UPI00156DF79C	NlpC/P60 family protein	NA
UHGV-0110932_31	eggNOG-mapper	1121115.AXVN01000051_gene809	NLP P60 protein	NA
UHGV-0110932_31	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0110932_31	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0110932_31	Structural annotation	PF05382, NF040678, COG0791	NA	NA