UHGV-0111001

Genome information

Genome length 40,353 bps

CDS count 68

Completeness 100.00% (complete)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111001
vOTU ID	vOTU-045638
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253029
BioSample	SAMEA3708749
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.57
Jumbo phage	No

Genome content
Genome length	40,353 bps
GC content	50.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	92.13%
Average CDS length	550.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111001_1	PHROG	phrog_20532	NA	unknown function
UHGV-0111001_1	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0111001_1	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0111001_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0111001_4	eggNOG-mapper	1041142.ATTP01000043_gene5324	NA	NA
UHGV-0111001_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0111001_5	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0111001_5	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0111001_5	Structural annotation	PF05772	NA	NA
UHGV-0111001_6	PHROG	phrog_7566	NA	unknown function
UHGV-0111001_6	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0111001_7	PHROG	phrog_7545	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111001_7	UniRef90	UniRef90_UPI0013794BCD	HNH endonuclease	NA
UHGV-0111001_7	eggNOG-mapper	649831.L083_0356	HNH endonuclease	NA
UHGV-0111001_7	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0111001_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0111001_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0111001_8	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-0111001_8	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0111001_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0111001_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0111001_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0111001_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0111001_8	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0111001_9	PHROG	phrog_4973	NA	unknown function
UHGV-0111001_9	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0111001_9	eggNOG-mapper	584708.Apau_1668	Helix-turn-helix domain	NA
UHGV-0111001_9	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0111001_9	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0111001_10	PHROG	phrog_15768	NA	unknown function
UHGV-0111001_10	eggNOG-mapper	886379.AEWI01000001_gene1766	NA	NA
UHGV-0111001_10	Structural annotation	PF09681, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0111001_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0111001_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0111001_11	UniRef90	UniRef90_A0A1Y4J2T6	SF4 helicase domain-containing protein	NA
UHGV-0111001_11	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0111001_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0111001_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0111001_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-0111001_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0111001_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0111001_14	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0111001_14	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0111001_14	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0111001_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0111001_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0111001_14	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0111001_15	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0111001_19	PHROG	phrog_9958	NA	unknown function
UHGV-0111001_19	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0111001_19	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0111001_19	Structural annotation	PF19789	NA	NA
UHGV-0111001_23	PHROG	phrog_11237	NA	unknown function
UHGV-0111001_23	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0111001_23	Structural annotation	NF009167	NA	NA
UHGV-0111001_24	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0111001_24	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0111001_24	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0111001_24	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0111001_24	Structural annotation	PF16677	NA	NA
UHGV-0111001_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0111001_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0111001_25	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0111001_25	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0111001_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0111001_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0111001_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0111001_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111001_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0111001_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0111001_26	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0111001_26	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0111001_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0111001_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0111001_27	PHROG	phrog_8680	NA	unknown function
UHGV-0111001_27	UniRef90	UniRef90_UPI00189ACAD3	NA	NA
UHGV-0111001_27	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0111001_27	Pfam	PF14386	NA	DUF4417
UHGV-0111001_27	Structural annotation	PF14386	NA	NA
UHGV-0111001_29	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0111001_29	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0111001_29	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0111001_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0111001_29	COG	COG2369	NA	NA
UHGV-0111001_29	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0111001_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0111001_32	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0111001_32	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0111001_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0111001_32	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0111001_32	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0111001_33	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0111001_33	Structural annotation	PF06810	NA	NA
UHGV-0111001_34	PHROG	phrog_544	major head protein	head and packaging
UHGV-0111001_34	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0111001_34	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0111001_34	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0111001_36	PHROG	phrog_17977	NA	unknown function
UHGV-0111001_36	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0111001_36	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0111001_37	Structural annotation	PF11367	NA	NA
UHGV-0111001_38	PHROG	phrog_885	major tail protein	tail
UHGV-0111001_38	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0111001_38	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0111001_38	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0111001_39	PHROG	phrog_18646	NA	unknown function
UHGV-0111001_41	PHROG	phrog_20920	NA	unknown function
UHGV-0111001_41	eggNOG-mapper	1121335.Clst_0399	NA	NA
UHGV-0111001_41	Structural annotation	PF16674	NA	NA
UHGV-0111001_42	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0111001_42	UniRef90	UniRef90_A0A0D0SGC8	Phage minor tail protein	NA
UHGV-0111001_42	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0111001_42	COG	COG1511	NA	NA
UHGV-0111001_42	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0111001_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0111001_43	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0111001_43	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0111001_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-0111001_43	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0111001_44	PHROG	phrog_538	minor tail protein	tail
UHGV-0111001_44	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0111001_44	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0111001_44	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0111001_44	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0111001_45	PHROG	phrog_9534	head protein	head and packaging
UHGV-0111001_45	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-0111001_45	Structural annotation	PF18463, PF20747	NA	NA
UHGV-0111001_48	KOfam	K07273	acm; lysozyme	NA
UHGV-0111001_48	PHROG	phrog_291	endolysin	lysis
UHGV-0111001_48	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0111001_48	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-0111001_48	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0111001_48	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0111001_48	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0111001_48	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0111001_49	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0111001_50	PHROG	phrog_13256	NA	unknown function
UHGV-0111001_50	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0111001_51	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0111001_51	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0111001_51	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0111001_52	PHROG	phrog_3754	NA	unknown function
UHGV-0111001_52	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0111001_53	PHROG	phrog_21718	NA	unknown function
UHGV-0111001_53	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0111001_54	PHROG	phrog_22984	NA	unknown function
UHGV-0111001_55	PHROG	phrog_16490	NA	unknown function
UHGV-0111001_55	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0111001_56	PHROG	phrog_20016	NA	unknown function
UHGV-0111001_56	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0111001_56	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0111001_57	Structural annotation	PF12510	NA	NA
UHGV-0111001_58	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0111001_59	KOfam	K14059	int; integrase	NA
UHGV-0111001_59	PHROG	phrog_1	integrase	integration and excision
UHGV-0111001_59	UniRef90	UniRef90_A0A1Y4T0F9	Tyr recombinase domain-containing protein	NA
UHGV-0111001_59	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0111001_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0111001_59	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0111001_59	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0111001_60	Structural annotation	PF12688	NA	NA
UHGV-0111001_62	PHROG	phrog_585	NA	unknown function
UHGV-0111001_62	UniRef90	UniRef90_A0A2G0E8R9	NA	NA
UHGV-0111001_62	eggNOG-mapper	1158602.I590_03003	NA	NA
UHGV-0111001_62	Pfam	PF10711	NA	DUF2513
UHGV-0111001_62	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0111001_64	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0111001_64	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0111001_64	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0111001_64	eggNOG-mapper	693746.OBV_25500	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0111001_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111001_64	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0111001_64	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0111001_65	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0111001_65	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0111001_65	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0111001_65	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0111001_66	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0111001_66	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0111001_68	PHROG	phrog_5070	NA	unknown function
UHGV-0111001_68	UniRef90	UniRef90_A0A085HIF4	Gp229 family phage protein (Fragment)	NA
UHGV-0111001_68	eggNOG-mapper	768710.DesyoDRAFT_1067	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0111001_68	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA