UHGV-0111057

Genome information

Genome length 26,581 bps

CDS count 38

Completeness 99.90% (high-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111057
vOTU ID	vOTU-059993
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_255770
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.8
Jumbo phage	No

Genome content
Genome length	26,581 bps
GC content	40.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	92.86%
Average CDS length	652.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111057_1	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0111057_1	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0111057_1	UniRef90	UniRef90_A0A373KZS3	XRE family transcriptional regulator	NA
UHGV-0111057_1	eggNOG-mapper	411471.SUBVAR_06679	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0111057_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0111057_1	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0111057_1	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0111057_2	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0111057_2	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0111057_2	UniRef90	UniRef90_A0A1C6HHY1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0111057_2	eggNOG-mapper	411902.CLOBOL_03426	COG COG0338 Site-specific DNA methylase	NA
UHGV-0111057_2	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-0111057_2	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0111057_2	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0111057_2	COG	COG0338	DNA-adenine methylase	NA
UHGV-0111057_2	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0111057_3	PHROG	phrog_21357	endolysin	lysis
UHGV-0111057_3	UniRef90	UniRef90_A0A373L0D7	CHAP domain-containing protein	NA
UHGV-0111057_3	eggNOG-mapper	693746.OBV_19030	CHAP domain	NA
UHGV-0111057_3	Pfam	PF05257	CHAP domain	CHAP
UHGV-0111057_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0111057_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0111057_3	Structural annotation	PF01471, PF00877, TIGR02594, TIGR03979, COG3942	NA	NA
UHGV-0111057_4	eggNOG-mapper	642492.Clole_0840	NA	NA
UHGV-0111057_4	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0111057_6	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0111057_6	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0111057_6	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0111057_7	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0111057_7	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0111057_7	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0111057_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0111057_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0111057_7	COG	COG4926	Phage-related protein	NA
UHGV-0111057_7	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0111057_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0111057_8	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0111057_8	eggNOG-mapper	1246.JMEA01000006_gene51	phage tail	NA
UHGV-0111057_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0111057_8	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0111057_9	PHROG	phrog_23464	NA	unknown function
UHGV-0111057_9	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0111057_9	COG	COG5283	Phage-related tail protein	NA
UHGV-0111057_9	Structural annotation	COG3941	NA	NA
UHGV-0111057_11	PHROG	phrog_1021	NA	unknown function
UHGV-0111057_11	eggNOG-mapper	1321778.HMPREF1982_03556	NA	NA
UHGV-0111057_12	PHROG	phrog_885	major tail protein	tail
UHGV-0111057_12	UniRef90	UniRef90_Q894J4	Conserved protein	NA
UHGV-0111057_12	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0111057_12	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0111057_13	Structural annotation	PF12691	NA	NA
UHGV-0111057_14	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0111057_14	eggNOG-mapper	642492.Clole_0747	NA	NA
UHGV-0111057_14	Structural annotation	TIGR01725	NA	NA
UHGV-0111057_15	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0111057_15	UniRef90	UniRef90_A0A373XMG4	Phage head-tail adapter protein	NA
UHGV-0111057_15	eggNOG-mapper	1536769.P40081_01090	head-tail adaptor	NA
UHGV-0111057_15	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0111057_15	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0111057_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0111057_16	PHROG	phrog_5223	neck protein	connector
UHGV-0111057_16	UniRef90	UniRef90_A0A174XIL0	NA	NA
UHGV-0111057_16	eggNOG-mapper	411468.CLOSCI_00547	NA	NA
UHGV-0111057_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0111057_17	UniRef90	UniRef90_A0A373XLR3	Phage major capsid protein	NA
UHGV-0111057_17	eggNOG-mapper	411468.CLOSCI_00548	Phage capsid family	NA
UHGV-0111057_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0111057_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0111057_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0111057_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0111057_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0111057_18	UniRef90	UniRef90_A0A373XPG0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0111057_18	eggNOG-mapper	1382358.JHVN01000024_gene1706	Serine dehydrogenase proteinase	NA
UHGV-0111057_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0111057_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0111057_18	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0111057_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0111057_19	UniRef90	UniRef90_A0A373XNZ6	Phage portal protein	NA
UHGV-0111057_19	eggNOG-mapper	411468.CLOSCI_00550	Phage portal protein	NA
UHGV-0111057_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0111057_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0111057_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0111057_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0111057_20	UniRef90	UniRef90_A0A373XNY0	Terminase large subunit	NA
UHGV-0111057_20	eggNOG-mapper	411468.CLOSCI_00551	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0111057_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0111057_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0111057_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0111057_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0111057_21	PHROG	phrog_1066	NA	unknown function
UHGV-0111057_21	eggNOG-mapper	931276.Cspa_c10130	NA	NA
UHGV-0111057_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111057_22	UniRef90	UniRef90_A0A373XNZ9	HNH endonuclease	NA
UHGV-0111057_22	eggNOG-mapper	500633.CLOHIR_00362	HNH endonuclease	NA
UHGV-0111057_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0111057_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0111057_23	eggNOG-mapper	394503.Ccel_3053	NA	NA
UHGV-0111057_23	Structural annotation	TIGR01636	NA	NA
UHGV-0111057_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0111057_24	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0111057_24	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0111057_27	PHROG	phrog_15609	NA	unknown function
UHGV-0111057_27	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0111057_27	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0111057_27	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0111057_28	PHROG	phrog_8470	NA	unknown function
UHGV-0111057_28	UniRef90	UniRef90_UPI0005D16C58	PcfJ domain-containing protein	NA
UHGV-0111057_28	eggNOG-mapper	1514668.JOOA01000001_gene226	PcfJ-like protein	NA
UHGV-0111057_28	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0111057_28	Structural annotation	PF14284	NA	NA
UHGV-0111057_29	PHROG	phrog_38338	NA	unknown function
UHGV-0111057_29	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-0111057_31	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-0111057_31	eggNOG-mapper	1283300.ATXB01000001_gene1737	DNA excision	NA
UHGV-0111057_31	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0111057_31	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0111057_31	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0111057_31	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0111057_32	UniRef90	UniRef90_A0A374DVN3	DNA-binding protein	NA
UHGV-0111057_32	eggNOG-mapper	1219626.HMPREF1639_07045	NA	NA
UHGV-0111057_33	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-0111057_33	eggNOG-mapper	1235793.C809_00679	Helix-turn-helix XRE-family like proteins	NA
UHGV-0111057_33	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0111057_34	PHROG	phrog_1914	NA	unknown function
UHGV-0111057_34	UniRef90	UniRef90_A0A373XNL4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0111057_34	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0111057_34	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0111057_34	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0111057_34	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0111057_35	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0111057_36	KOfam	K14059	int; integrase	NA
UHGV-0111057_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0111057_36	UniRef90	UniRef90_A0A2N0ULT2	Integrase	NA
UHGV-0111057_36	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0111057_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0111057_36	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0111057_36	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0111057_37	PHROG	phrog_11900	NA	unknown function
UHGV-0111057_37	UniRef90	UniRef90_A0A2N0UW35	Fido domain-containing protein	NA
UHGV-0111057_37	eggNOG-mapper	1235799.C818_03247	Fic/DOC family	NA
UHGV-0111057_37	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0111057_37	COG	COG3177	Fic family protein	NA
UHGV-0111057_37	Structural annotation	PF02661, PF20586, TIGR02613, COG3177	NA	NA
UHGV-0111057_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0111057_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0111057_38	UniRef90	UniRef90_A0A373KL01	XRE family transcriptional regulator	NA
UHGV-0111057_38	eggNOG-mapper	1235797.C816_03924	PFAM helix-turn-helix domain protein	NA
UHGV-0111057_38	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0111057_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0111057_38	Structural annotation	PF01381, NF041951, COG1396	NA	NA