UHGV-0111066

Genome information

vOTU vOTU-041911

Genome length 33,650 bps

CDS count 58

Completeness 68.15% (medium-quality)

geNomad score 0.9427

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111066
vOTU ID	vOTU-041911
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_243517
BioSample	SAMEA3708764
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9427
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.25
Jumbo phage	No

Genome content
Genome length	33,650 bps
GC content	31.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	86.27%
Average CDS length	504.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111066_1	UniRef90	UniRef90_A0A7I8DYD5	HTH cro/C1-type domain-containing protein	NA
UHGV-0111066_1	eggNOG-mapper	1504823.CCMM01000008_gene1055	sequence-specific DNA binding	NA
UHGV-0111066_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111066_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111066_1	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0111066_3	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0111066_3	UniRef90	UniRef90_A0A416ZL61	NA	NA
UHGV-0111066_3	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0111066_3	Structural annotation	PF14359	NA	NA
UHGV-0111066_4	PHROG	phrog_1048	NA	unknown function
UHGV-0111066_4	UniRef90	UniRef90_A0A417IJC2	NA	NA
UHGV-0111066_4	eggNOG-mapper	411462.DORLON_00765	NA	NA
UHGV-0111066_4	Pfam	PF11195	NA	DUF2829
UHGV-0111066_4	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0111066_4	Structural annotation	PF11195	NA	NA
UHGV-0111066_5	PHROG	phrog_918	NA	unknown function
UHGV-0111066_5	UniRef90	UniRef90_UPI001D09AE2C	NA	NA
UHGV-0111066_5	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0111066_5	Pfam	PF19791	NA	DUF6275
UHGV-0111066_5	Structural annotation	PF19791	NA	NA
UHGV-0111066_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0111066_7	UniRef90	UniRef90_UPI001570CBC5	phage minor capsid protein	NA
UHGV-0111066_7	eggNOG-mapper	1232449.BAHV02000010_gene2710	NA	NA
UHGV-0111066_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0111066_7	COG	COG2369	NA	NA
UHGV-0111066_7	Structural annotation	PF06152	NA	NA
UHGV-0111066_8	PHROG	phrog_533	portal protein	head and packaging
UHGV-0111066_8	UniRef90	UniRef90_A0A7I8DYD1	Putative minor capsid protein, phage associated	NA
UHGV-0111066_8	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0111066_8	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0111066_9	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0111066_9	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0111066_9	UniRef90	UniRef90_A0A7I8E1I1	Terminase	NA
UHGV-0111066_9	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-0111066_9	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0111066_9	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0111066_9	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111066_9	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0111066_10	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0111066_10	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0111066_10	UniRef90	UniRef90_A0A7I8DYC5	Phage terminase small subunit	NA
UHGV-0111066_10	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0111066_10	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0111066_10	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0111066_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111066_10	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0111066_11	UniRef90	UniRef90_A0A2T3G2L3	Ferritin-like diiron domain-containing protein	NA
UHGV-0111066_11	eggNOG-mapper	1211844.CBLM010000023_gene991	NA	NA
UHGV-0111066_15	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0111066_15	UniRef90	UniRef90_A0A0J8Z1B9	Prophage pi1 protein 29	NA
UHGV-0111066_15	eggNOG-mapper	272623.L62008	NA	NA
UHGV-0111066_15	Pfam	PF08139	Prokaryotic membrane lipoprotein lipid attachment site	LPAM_1
UHGV-0111066_16	PHROG	phrog_12650	NA	unknown function
UHGV-0111066_16	Structural annotation	NF010673	NA	NA
UHGV-0111066_17	Structural annotation	PF17020, NF005100	NA	NA
UHGV-0111066_19	PHROG	phrog_22292	NA	unknown function
UHGV-0111066_20	eggNOG-mapper	908337.HMPREF9257_0550	NA	NA
UHGV-0111066_21	PHROG	phrog_10455	NA	unknown function
UHGV-0111066_21	UniRef90	UniRef90_R7N9Z9	Conserved domain protein	NA
UHGV-0111066_22	eggNOG-mapper	1120978.KB894087_gene426	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0111066_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0111066_23	Structural annotation	PF01283, NF006816, COG4830	NA	NA
UHGV-0111066_25	Structural annotation	PF14460, TIGR03737	NA	NA
UHGV-0111066_27	KOfam	K21029	moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]	NA
UHGV-0111066_27	UniRef90	UniRef90_A0A417IIR9	ThiF domain-containing protein	NA
UHGV-0111066_27	eggNOG-mapper	428127.EUBDOL_01242	ThiF family	NA
UHGV-0111066_27	Pfam	PF00899	ThiF family	ThiF
UHGV-0111066_27	COG	COG0476	Molybdopterin or thiamine biosynthesis adenylyltransferase	NA
UHGV-0111066_27	Structural annotation	PF00899, MF_03049, TIGR03736, COG0476	NA	NA
UHGV-0111066_29	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0111066_29	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0111066_29	UniRef90	UniRef90_A0A417IHK0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0111066_29	eggNOG-mapper	1211844.CBLM010000016_gene1505	Endodeoxyribonuclease RusA	NA
UHGV-0111066_29	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0111066_29	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0111066_29	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0111066_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0111066_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0111066_31	UniRef90	UniRef90_A0A416FZG2	Single-stranded DNA-binding protein	NA
UHGV-0111066_31	eggNOG-mapper	1211844.CBLM010000119_gene3417	COG COG0629 Single-stranded DNA-binding protein	NA
UHGV-0111066_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0111066_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0111066_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0111066_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0111066_31	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0111066_32	UniRef90	UniRef90_A0A417IHK4	Inhibitor_G39P domain-containing protein	NA
UHGV-0111066_32	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0111066_32	Structural annotation	PF11417	NA	NA
UHGV-0111066_33	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0111066_33	Structural annotation	PF09681, MF_01177, NF033789, COG0640	NA	NA
UHGV-0111066_35	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0111066_35	UniRef90	UniRef90_A0A417IHY2	Phage recombination protein Bet	NA
UHGV-0111066_35	eggNOG-mapper	1122173.AXVL01000068_gene1414	DNA synthesis involved in double-strand break repair via homologous recombination	NA
UHGV-0111066_35	Pfam	PF03837	RecT family	RecT
UHGV-0111066_35	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0111066_35	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0111066_35	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0111066_36	PHROG	phrog_750	NA	unknown function
UHGV-0111066_36	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0111066_38	PHROG	phrog_674	NA	unknown function
UHGV-0111066_38	UniRef90	UniRef90_A0A416FZA6	NA	NA
UHGV-0111066_38	eggNOG-mapper	1449343.JQLQ01000002_gene1360	NA	NA
UHGV-0111066_38	Pfam	PF07083	NA	DUF1351
UHGV-0111066_38	Structural annotation	PF07083	NA	NA
UHGV-0111066_39	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0111066_39	UniRef90	UniRef90_A0A7I8DYF8	Antirepressor	NA
UHGV-0111066_39	eggNOG-mapper	1504823.CCMM01000008_gene1052	Phage regulatory protein	NA
UHGV-0111066_39	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0111066_39	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0111066_39	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0111066_39	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0111066_39	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0111066_41	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111066_41	UniRef90	UniRef90_A0A7I8DYN2	YqaJ domain-containing protein	NA
UHGV-0111066_41	eggNOG-mapper	568816.Acin_1253	YqaJ viral recombinase family protein	NA
UHGV-0111066_41	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0111066_41	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0111066_41	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0111066_41	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0111066_42	Structural annotation	PF04325, TIGR04116, COG5570	NA	NA
UHGV-0111066_46	UniRef90	UniRef90_A0A2T3G269	DNA-binding protein	NA
UHGV-0111066_47	UniRef90	UniRef90_A0A2T3G287	XRE family transcriptional regulator	NA
UHGV-0111066_47	eggNOG-mapper	431943.CKL_3316	Helix-turn-helix XRE-family like proteins	NA
UHGV-0111066_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111066_49	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0111066_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0111066_49	UniRef90	UniRef90_A0A1C6FKH6	HTH-type transcriptional regulator immR	NA
UHGV-0111066_49	eggNOG-mapper	411490.ANACAC_00814	Helix-turn-helix XRE-family like proteins	NA
UHGV-0111066_49	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0111066_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111066_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111066_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0111066_50	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0111066_50	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0111066_50	UniRef90	UniRef90_A0A1C6FJX9	LexA repressor	NA
UHGV-0111066_50	eggNOG-mapper	476272.RUMHYD_03305	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0111066_50	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0111066_50	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0111066_50	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0111066_50	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974	NA	NA
UHGV-0111066_51	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0111066_51	UniRef90	UniRef90_A0A2T3G286	NA	NA
UHGV-0111066_51	Pfam	PF13643	NA	DUF4145
UHGV-0111066_53	PHROG	phrog_2232	NA	unknown function
UHGV-0111066_53	UniRef90	UniRef90_UPI001D0A524A	NA	NA
UHGV-0111066_53	eggNOG-mapper	1321372.AQQB01000060_gene34	NA	NA
UHGV-0111066_53	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0111066_53	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0111066_55	eggNOG-mapper	1235792.C808_05272	NA	NA
UHGV-0111066_55	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0111066_57	KOfam	K14059	int; integrase	NA
UHGV-0111066_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0111066_57	UniRef90	UniRef90_A0A7I8DY84	Site-specific integrase	NA
UHGV-0111066_57	eggNOG-mapper	1123313.ATUT01000024_gene585	Pfam:Integrase_AP2	NA
UHGV-0111066_57	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0111066_57	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0111066_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0111066_57	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0111066_57	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0111066_58	KOfam	K18908	mepA; multidrug efflux pump	NA
UHGV-0111066_58	PHROG	phrog_6241	NA	unknown function
UHGV-0111066_58	UniRef90	UniRef90_A0A1C5LNP3	Multidrug export protein mepA	NA
UHGV-0111066_58	eggNOG-mapper	1504823.CCMM01000008_gene713	drug transmembrane transporter activity	NA
UHGV-0111066_58	Pfam	PF01554	MatE	MatE
UHGV-0111066_58	NCBIFam	TIGR00797.1	MATE family efflux transporter	NA
UHGV-0111066_58	COG	COG0534	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	NA
UHGV-0111066_58	Structural annotation	PF03023, MF_00400, NF041801, COG0534	NA	NA