UHGV-0111098

Genome information

Genome length 36,696 bps

CDS count 58

Completeness 92.77% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111098
vOTU ID	vOTU-081340
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_252537
BioSample	SAMEA3708854
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.77% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	73.5
Jumbo phage	No

Genome content
Genome length	36,696 bps
GC content	50.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.80%
Average CDS length	588.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111098_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0111098_1	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0111098_1	UniRef90	UniRef90_A0A2B7YNI4	HTH cro/C1-type domain-containing protein	NA
UHGV-0111098_1	eggNOG-mapper	1321779.HMPREF1984_01336	sequence-specific DNA binding	NA
UHGV-0111098_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111098_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0111098_1	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0111098_5	UniRef90	UniRef90_A0A354WRF5	NA	NA
UHGV-0111098_5	eggNOG-mapper	1229751.R9QLK3_9CAUD	NA	NA
UHGV-0111098_5	Pfam	PF05339	NA	DUF739
UHGV-0111098_5	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0111098_9	PHROG	phrog_13321	NA	unknown function
UHGV-0111098_9	UniRef90	UniRef90_A0A1H4E720	DNA repair photolyase	NA
UHGV-0111098_9	eggNOG-mapper	457421.CBFG_04971	NA	NA
UHGV-0111098_9	COG	COG1533	DNA repair photolyase	NA
UHGV-0111098_9	Structural annotation	PF20903, MF_00660, TIGR04470, COG0535	NA	NA
UHGV-0111098_10	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111098_10	UniRef90	UniRef90_A0A2N5PKD7	Recombinase	NA
UHGV-0111098_10	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0111098_10	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0111098_10	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0111098_10	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0111098_10	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0111098_11	PHROG	phrog_674	NA	unknown function
UHGV-0111098_11	UniRef90	UniRef90_UPI001C1259C1	NA	NA
UHGV-0111098_11	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0111098_11	Pfam	PF07083	NA	DUF1351
UHGV-0111098_11	Structural annotation	PF07083	NA	NA
UHGV-0111098_12	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0111098_12	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0111098_12	UniRef90	UniRef90_A0A1C5PRW1	p33	NA
UHGV-0111098_12	eggNOG-mapper	742740.HMPREF9474_03488	RecT family	NA
UHGV-0111098_12	Pfam	PF03837	RecT family	RecT
UHGV-0111098_12	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0111098_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0111098_12	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0111098_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0111098_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0111098_13	UniRef90	UniRef90_A0A255IMH7	Single-stranded DNA-binding protein	NA
UHGV-0111098_13	eggNOG-mapper	500632.CLONEX_02624	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0111098_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0111098_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0111098_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0111098_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0111098_13	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0111098_14	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0111098_14	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0111098_14	eggNOG-mapper	887929.HMP0721_1279	NA	NA
UHGV-0111098_14	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0111098_16	PHROG	phrog_4973	NA	unknown function
UHGV-0111098_16	UniRef90	UniRef90_UPI001D0904CC	helix-turn-helix domain-containing protein	NA
UHGV-0111098_16	eggNOG-mapper	880073.Calab_0752	Helix-turn-helix domain	NA
UHGV-0111098_16	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0111098_16	Structural annotation	PF14090, TIGR00373, COG4738	NA	NA
UHGV-0111098_17	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0111098_17	UniRef90	UniRef90_A0A417W6N9	Phage_rep_org_N domain-containing protein	NA
UHGV-0111098_17	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-0111098_17	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0111098_17	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0111098_17	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0111098_18	PHROG	phrog_9804	NA	unknown function
UHGV-0111098_18	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-0111098_18	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0111098_18	AcrCatalog	cluster_137185	NA	NA
UHGV-0111098_18	Structural annotation	PF11417	NA	NA
UHGV-0111098_20	Pfam	PF18789	Defence against restriction A C-terminal	DarA_C
UHGV-0111098_20	Structural annotation	PF18789	NA	NA
UHGV-0111098_21	eggNOG-mapper	1297617.JPJD01000020_gene313	NA	NA
UHGV-0111098_22	PHROG	phrog_22543	NA	unknown function
UHGV-0111098_24	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0111098_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0111098_25	UniRef90	UniRef90_UPI0007741D7F	NA	NA
UHGV-0111098_25	eggNOG-mapper	748727.CLJU_c03460	sigma factor activity	NA
UHGV-0111098_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0111098_25	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0111098_26	PHROG	phrog_12517	NA	unknown function
UHGV-0111098_26	UniRef90	UniRef90_UPI001B9CE7F5	chromosome partitioning protein ParB	NA
UHGV-0111098_26	eggNOG-mapper	1035196.HMPREF9998_01728	NA	NA
UHGV-0111098_26	PADLOC	MTase_II_00162	Type II methyltransferase	RM
UHGV-0111098_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0111098_26	COG	COG0863	DNA modification methylase	NA
UHGV-0111098_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0111098_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0111098_27	UniRef90	UniRef90_A0A6N7XHE4	Terminase small subunit	NA
UHGV-0111098_27	eggNOG-mapper	445971.ANASTE_00710	Terminase small subunit	NA
UHGV-0111098_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0111098_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0111098_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0111098_29	PHROG	phrog_1233	NA	unknown function
UHGV-0111098_29	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0111098_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0111098_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0111098_30	UniRef90	UniRef90_A0A1C5PQJ7	Phage terminase, large subunit, PBSX family	NA
UHGV-0111098_30	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0111098_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0111098_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0111098_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0111098_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111098_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0111098_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0111098_32	UniRef90	UniRef90_UPI001C0F698D	phage portal protein	NA
UHGV-0111098_32	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0111098_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0111098_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0111098_33	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0111098_33	UniRef90	UniRef90_A0A415N157	Phage_Mu_F domain-containing protein	NA
UHGV-0111098_33	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0111098_33	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0111098_33	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0111098_33	COG	COG2369	NA	NA
UHGV-0111098_33	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0111098_35	PHROG	phrog_443	holin	lysis
UHGV-0111098_35	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-0111098_35	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0111098_35	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0111098_35	Structural annotation	PF16945	NA	NA
UHGV-0111098_36	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0111098_36	PHROG	phrog_14030	NA	unknown function
UHGV-0111098_36	UniRef90	UniRef90_A0A1Y4F727	NlpC/P60 domain-containing protein	NA
UHGV-0111098_36	eggNOG-mapper	641107.CDLVIII_3774	Bacteriophage peptidoglycan hydrolase	NA
UHGV-0111098_36	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0111098_36	Pfam	PF01476	LysM domain	LysM
UHGV-0111098_36	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0111098_36	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0111098_36	Structural annotation	PF05382, PF01471, NF038080, NF033742, COG3409, COG1388	NA	NA
UHGV-0111098_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0111098_37	UniRef90	UniRef90_UPI001C0FB34A	phage scaffolding protein	NA
UHGV-0111098_37	eggNOG-mapper	1235800.C819_02235	Phage minor structural protein GP20	NA
UHGV-0111098_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0111098_37	Structural annotation	PF06810	NA	NA
UHGV-0111098_38	PHROG	phrog_212	major head protein	head and packaging
UHGV-0111098_38	UniRef90	UniRef90_UPI001C105D30	phage capsid protein	NA
UHGV-0111098_38	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0111098_38	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0111098_40	PHROG	phrog_1236	head protein	head and packaging
UHGV-0111098_40	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0111098_40	Structural annotation	PF05135	NA	NA
UHGV-0111098_41	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0111098_41	UniRef90	UniRef90_A0A1C6E9J3	Bacteriophage head-tail adaptor	NA
UHGV-0111098_41	eggNOG-mapper	1235800.C819_02231	NA	NA
UHGV-0111098_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0111098_42	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0111098_42	UniRef90	UniRef90_A0A3E3E9Q7	HK97 gp10 family phage protein	NA
UHGV-0111098_42	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0111098_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0111098_42	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0111098_43	PHROG	phrog_957	head protein	head and packaging
UHGV-0111098_43	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0111098_43	Structural annotation	PF12691	NA	NA
UHGV-0111098_44	PHROG	phrog_885	major tail protein	tail
UHGV-0111098_44	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0111098_44	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0111098_45	PHROG	phrog_1021	NA	unknown function
UHGV-0111098_45	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0111098_47	PHROG	phrog_23464	NA	unknown function
UHGV-0111098_47	UniRef90	UniRef90_A0A1C6JGQ9	Phage-related minor tail protein	NA
UHGV-0111098_47	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0111098_47	COG	COG5283	Phage-related tail protein	NA
UHGV-0111098_48	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0111098_48	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0111098_48	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0111098_48	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0111098_49	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0111098_49	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0111098_49	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-0111098_49	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0111098_50	PHROG	phrog_538	minor tail protein	tail
UHGV-0111098_50	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0111098_50	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0111098_50	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0111098_50	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0111098_51	PHROG	phrog_9534	head protein	head and packaging
UHGV-0111098_51	eggNOG-mapper	431943.CKL_4054	COG NOG18825 non supervised orthologous group	NA
UHGV-0111098_51	Structural annotation	PF20747, PF02839	NA	NA
UHGV-0111098_53	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0111098_53	UniRef90	UniRef90_UPI000E5CE8E9	phage tail family protein	NA
UHGV-0111098_53	eggNOG-mapper	411465.PEPMIC_00745	NA	NA
UHGV-0111098_53	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0111098_54	PHROG	phrog_3558	tail protein	tail
UHGV-0111098_54	UniRef90	UniRef90_A8SKQ2	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0111098_54	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0111098_54	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0111098_54	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0111098_54	COG	COG4926	Phage-related protein	NA
UHGV-0111098_54	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0111098_55	PHROG	phrog_372	tail protein	tail
UHGV-0111098_55	UniRef90	UniRef90_UPI001C0AA9E4	NA	NA
UHGV-0111098_55	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0111098_55	Pfam	PF05895	NA	DUF859
UHGV-0111098_55	COG	COG4675	Phage tail collar domain	NA
UHGV-0111098_55	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0111098_56	Structural annotation	PF03965, NF033789, COG3682	NA	NA