UHGV-0111130

Genome information

Genome length 29,533 bps

CDS count 41

Completeness 82.47% (medium-quality)

geNomad score 0.9739

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111130
vOTU ID	vOTU-017252
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_255183
BioSample	SAMEA3708768
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9739
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.3
Jumbo phage	No

Genome content
Genome length	29,533 bps
GC content	56.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	94.85%
Average CDS length	686.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111130_2	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0111130_2	UniRef90	UniRef90_A0A417W5J7	Helix-turn-helix domain-containing protein	NA
UHGV-0111130_2	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0111130_2	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0111130_2	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0111130_2	Structural annotation	PF13730, NF033789, COG1846	NA	NA
UHGV-0111130_3	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0111130_3	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0111130_3	UniRef90	UniRef90_A0A416DGZ9	DNA helicase	NA
UHGV-0111130_3	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0111130_3	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0111130_3	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0111130_3	COG	COG0305	Replicative DNA helicase	NA
UHGV-0111130_3	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0111130_4	Structural annotation	PF07870	NA	NA
UHGV-0111130_6	UniRef90	UniRef90_A0A417TN68	HTH_58 domain-containing protein	NA
UHGV-0111130_6	Structural annotation	PF02796	NA	NA
UHGV-0111130_7	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0111130_7	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0111130_7	UniRef90	UniRef90_A0A417F5K0	ParA family protein	NA
UHGV-0111130_7	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0111130_7	Pfam	PF13614	AAA domain	AAA_31
UHGV-0111130_7	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0111130_7	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0111130_8	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0111130_8	PHROG	phrog_27290	NA	unknown function
UHGV-0111130_8	UniRef90	UniRef90_A0A417W5V4	ParB domain-containing protein	NA
UHGV-0111130_8	eggNOG-mapper	642492.Clole_0730	ParB-like nuclease domain	NA
UHGV-0111130_8	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0111130_8	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0111130_8	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0111130_9	PHROG	phrog_1762	NA	unknown function
UHGV-0111130_9	UniRef90	UniRef90_A0A417W6G6	NA	NA
UHGV-0111130_9	eggNOG-mapper	1408324.JNJK01000011_gene333	NA	NA
UHGV-0111130_9	Pfam	PF11185	NA	DUF2971
UHGV-0111130_10	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0111130_10	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0111130_10	Structural annotation	PF01446	NA	NA
UHGV-0111130_12	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0111130_12	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111130_12	UniRef90	UniRef90_A0A396QGN3	HNH endonuclease	NA
UHGV-0111130_12	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-0111130_12	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0111130_12	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0111130_13	PHROG	phrog_1066	NA	unknown function
UHGV-0111130_13	eggNOG-mapper	1203606.HMPREF1526_01333	NA	NA
UHGV-0111130_13	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0111130_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0111130_15	UniRef90	UniRef90_A0A396Q7Z1	Terminase large subunit	NA
UHGV-0111130_15	eggNOG-mapper	1203606.HMPREF1526_01335	Terminase	NA
UHGV-0111130_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0111130_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0111130_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0111130_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0111130_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0111130_16	UniRef90	UniRef90_A0A396QRU6	Phage portal protein	NA
UHGV-0111130_16	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-0111130_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0111130_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0111130_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0111130_17	KOfam	K06904	NA	NA
UHGV-0111130_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0111130_17	UniRef90	UniRef90_A0A396QDF0	HK97 family phage prohead protease	NA
UHGV-0111130_17	eggNOG-mapper	1203606.HMPREF1526_01338	Caudovirus prohead serine protease	NA
UHGV-0111130_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0111130_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0111130_17	COG	COG3740	Phage head maturation protease	NA
UHGV-0111130_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0111130_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0111130_18	UniRef90	UniRef90_A0A417VTC4	Phage major capsid protein	NA
UHGV-0111130_18	eggNOG-mapper	1203606.HMPREF1526_01339	Phage capsid family	NA
UHGV-0111130_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0111130_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0111130_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0111130_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0111130_19	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0111130_19	UniRef90	UniRef90_A0A396Q9S6	Phage gp6-like head-tail connector protein	NA
UHGV-0111130_19	eggNOG-mapper	1209989.TepiRe1_2602	Phage gp6-like head-tail connector protein	NA
UHGV-0111130_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0111130_19	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0111130_19	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0111130_20	PHROG	phrog_25	head closure Hc1	connector
UHGV-0111130_20	UniRef90	UniRef90_A0A396Q875	Head-tail adaptor protein	NA
UHGV-0111130_20	eggNOG-mapper	97138.C820_00612	Phage head-tail adaptor	NA
UHGV-0111130_20	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0111130_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0111130_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0111130_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0111130_21	UniRef90	UniRef90_UPI00189BF3BE	HK97 gp10 family phage protein	NA
UHGV-0111130_21	eggNOG-mapper	394503.Ccel_2953	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0111130_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0111130_21	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0111130_22	PHROG	phrog_525	NA	unknown function
UHGV-0111130_22	Pfam	PF20765	NA	DUF6838
UHGV-0111130_22	Structural annotation	PF20765	NA	NA
UHGV-0111130_23	PHROG	phrog_1480	tail sheath	tail
UHGV-0111130_23	UniRef90	UniRef90_A0A396Q9E2	Phage tail protein	NA
UHGV-0111130_23	eggNOG-mapper	1203606.HMPREF1526_01344	Phage tail sheath C-terminal domain	NA
UHGV-0111130_23	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0111130_23	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0111130_24	PHROG	phrog_365	tail protein	tail
UHGV-0111130_24	UniRef90	UniRef90_A0A417VUQ8	Terminase	NA
UHGV-0111130_24	eggNOG-mapper	318464.IO99_13720	Phage tail tube protein	NA
UHGV-0111130_24	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0111130_24	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0111130_25	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0111130_25	eggNOG-mapper	632245.CLP_2608	NA	NA
UHGV-0111130_25	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0111130_27	PHROG	phrog_23464	NA	unknown function
UHGV-0111130_27	UniRef90	UniRef90_R8W0E5	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0111130_27	eggNOG-mapper	1203606.HMPREF1526_01348	phage tail tape measure protein	NA
UHGV-0111130_27	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0111130_27	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0111130_28	PHROG	phrog_23201	NA	unknown function
UHGV-0111130_28	UniRef90	UniRef90_UPI000F05162E	phage portal protein	NA
UHGV-0111130_28	eggNOG-mapper	1120998.AUFC01000013_gene2949	LysM domain	NA
UHGV-0111130_28	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0111130_28	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0111130_29	PHROG	phrog_400	tail protein	tail
UHGV-0111130_29	UniRef90	UniRef90_A0A3E2XWU2	CHAP domain-containing protein	NA
UHGV-0111130_29	eggNOG-mapper	500633.CLOHIR_00378	NLP P60 protein	NA
UHGV-0111130_29	Pfam	PF05257	CHAP domain	CHAP
UHGV-0111130_29	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0111130_29	Structural annotation	PF14594, PF00877, MF_02071, NF033848, COG4379, COG0791, COG3584	NA	NA
UHGV-0111130_30	Structural annotation	PF10844, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-0111130_31	UniRef90	UniRef90_A0A3E2XWS6	NA	NA
UHGV-0111130_31	eggNOG-mapper	318464.IO99_13685	NA	NA
UHGV-0111130_31	Pfam	PF10934	NA	DUF2634
UHGV-0111130_31	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0111130_31	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0111130_32	PHROG	phrog_6	baseplate protein	tail
UHGV-0111130_32	UniRef90	UniRef90_A0A415ZGA0	Baseplate J protein	NA
UHGV-0111130_32	eggNOG-mapper	1203606.HMPREF1526_01353	Baseplate J-like protein	NA
UHGV-0111130_32	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0111130_32	COG	COG3299	NA	NA
UHGV-0111130_32	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0111130_33	PHROG	phrog_521	tail protein	tail
UHGV-0111130_33	UniRef90	UniRef90_A0A415ZGE0	NA	NA
UHGV-0111130_33	eggNOG-mapper	536232.CLM_1676	NA	NA
UHGV-0111130_33	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0111130_33	COG	COG3778	NA	NA
UHGV-0111130_33	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0111130_34	PHROG	phrog_5302	tail protein	tail
UHGV-0111130_34	UniRef90	UniRef90_A0A417HW08	Collagen-like protein	NA
UHGV-0111130_34	eggNOG-mapper	665950.HMPREF1025_01337	Phage tail-collar fibre protein	NA
UHGV-0111130_34	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0111130_36	PHROG	phrog_2310	NA	unknown function
UHGV-0111130_39	PHROG	phrog_297	holin	lysis
UHGV-0111130_39	UniRef90	UniRef90_A0A396MJ03	Phage holin	NA
UHGV-0111130_39	eggNOG-mapper	1196031.ALEG01000039_gene1307	Bacteriophage holin	NA
UHGV-0111130_39	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0111130_39	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0111130_39	COG	COG5546	NA	NA
UHGV-0111130_39	Structural annotation	COG5546	NA	NA
UHGV-0111130_40	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0111130_40	PHROG	phrog_670	endolysin	lysis
UHGV-0111130_40	UniRef90	UniRef90_A0A396Q5L1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0111130_40	eggNOG-mapper	1120998.AUFC01000016_gene8	Ami_2	NA
UHGV-0111130_40	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0111130_40	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0111130_40	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0111130_41	UniRef90	UniRef90_UPI001C0096B4	bacteriophage abortive infection AbiH family protein	NA
UHGV-0111130_41	eggNOG-mapper	573061.Clocel_3853	Bacteriophage abortive infection AbiH	NA
UHGV-0111130_41	Pfam	PF14253	Bacteriophage abortive infection AbiH	AbiH
UHGV-0111130_41	Structural annotation	PF14253	NA	NA