UHGV-0111151

Genome information

Genome length 40,653 bps

CDS count 77

Completeness 100.00% (complete)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111151
vOTU ID	vOTU-045645
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_264101
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.45
Jumbo phage	No

Genome content
Genome length	40,653 bps
GC content	51.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	92.14%
Average CDS length	491.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111151_1	PHROG	phrog_27197	NA	unknown function
UHGV-0111151_1	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0111151_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0111151_2	eggNOG-mapper	476272.RUMHYD_03338	NA	NA
UHGV-0111151_4	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0111151_5	PHROG	phrog_3136	NA	unknown function
UHGV-0111151_5	UniRef90	UniRef90_UPI001A9A8D4F	ASCH domain-containing protein	NA
UHGV-0111151_5	eggNOG-mapper	747.DR93_155	ASCH	NA
UHGV-0111151_5	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0111151_5	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0111151_8	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0111151_8	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0111151_8	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-0111151_8	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0111151_9	UniRef90	UniRef90_A0A1I3J1T2	NA	NA
UHGV-0111151_9	Pfam	PF04448	NA	DUF551
UHGV-0111151_9	Structural annotation	NF041588	NA	NA
UHGV-0111151_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0111151_16	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0111151_16	eggNOG-mapper	1347392.CCEZ01000015_gene2854	NA	NA
UHGV-0111151_16	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0111151_17	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-0111151_17	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0111151_17	Structural annotation	PF13542	NA	NA
UHGV-0111151_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0111151_18	PHROG	phrog_10250	NA	unknown function
UHGV-0111151_18	UniRef90	UniRef90_UPI0018AC3323	PBSX family phage terminase large subunit	NA
UHGV-0111151_18	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0111151_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0111151_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0111151_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111151_18	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0111151_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-0111151_19	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-0111151_19	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0111151_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0111151_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0111151_20	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0111151_20	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-0111151_20	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0111151_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0111151_20	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0111151_20	COG	COG2369	NA	NA
UHGV-0111151_20	Structural annotation	PF03496, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0111151_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0111151_22	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0111151_22	eggNOG-mapper	1140001.I571_01837	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0111151_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0111151_22	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0111151_22	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0111151_23	PHROG	phrog_1233	NA	unknown function
UHGV-0111151_23	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0111151_24	Structural annotation	PF18152	NA	NA
UHGV-0111151_25	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0111151_25	Structural annotation	PF06810	NA	NA
UHGV-0111151_26	PHROG	phrog_544	major head protein	head and packaging
UHGV-0111151_26	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0111151_26	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0111151_26	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0111151_28	PHROG	phrog_17977	NA	unknown function
UHGV-0111151_28	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0111151_28	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0111151_28	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0111151_29	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0111151_29	Structural annotation	PF11367	NA	NA
UHGV-0111151_30	PHROG	phrog_885	major tail protein	tail
UHGV-0111151_30	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0111151_30	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0111151_30	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0111151_31	PHROG	phrog_18646	NA	unknown function
UHGV-0111151_31	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-0111151_33	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0111151_33	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0111151_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0111151_33	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0111151_34	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0111151_34	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0111151_34	eggNOG-mapper	536232.CLM_2045	Phage tail protein	NA
UHGV-0111151_34	COG	COG4722	Phage-related protein YomH	NA
UHGV-0111151_34	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0111151_35	PHROG	phrog_538	minor tail protein	tail
UHGV-0111151_35	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0111151_35	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0111151_35	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0111151_35	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0111151_36	PHROG	phrog_9534	head protein	head and packaging
UHGV-0111151_36	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0111151_37	PHROG	phrog_2295	NA	unknown function
UHGV-0111151_37	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0111151_37	Structural annotation	PF14686, TIGR03000, COG2512	NA	NA
UHGV-0111151_40	eggNOG-mapper	1203606.HMPREF1526_01926	NA	NA
UHGV-0111151_41	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0111151_41	PHROG	phrog_894	endolysin	lysis
UHGV-0111151_41	UniRef90	UniRef90_R5EEQ7	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0111151_41	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-0111151_41	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0111151_41	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0111151_41	COG	COG3108	NA	NA
UHGV-0111151_41	Structural annotation	PF05951, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0111151_42	PHROG	phrog_937	hemolysin	other
UHGV-0111151_42	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0111151_43	PHROG	phrog_10091	holin	lysis
UHGV-0111151_43	UniRef90	UniRef90_D7GNX3	Holin, phage phi LC3 family	NA
UHGV-0111151_43	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0111151_43	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0111151_43	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0111151_43	COG	COG5546	NA	NA
UHGV-0111151_43	Structural annotation	COG5546	NA	NA
UHGV-0111151_44	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-0111151_45	PHROG	phrog_3754	NA	unknown function
UHGV-0111151_45	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0111151_46	PHROG	phrog_21718	NA	unknown function
UHGV-0111151_46	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0111151_47	PHROG	phrog_22984	NA	unknown function
UHGV-0111151_48	PHROG	phrog_16490	NA	unknown function
UHGV-0111151_48	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0111151_49	PHROG	phrog_20016	NA	unknown function
UHGV-0111151_49	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0111151_49	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0111151_49	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0111151_50	Structural annotation	PF12510	NA	NA
UHGV-0111151_52	KOfam	K14059	int; integrase	NA
UHGV-0111151_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0111151_52	UniRef90	UniRef90_A0A3D2HVQ9	Tyr recombinase domain-containing protein	NA
UHGV-0111151_52	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0111151_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0111151_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0111151_52	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0111151_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111151_53	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0111151_54	PHROG	phrog_7974	NA	unknown function
UHGV-0111151_54	UniRef90	UniRef90_UPI001C86E7C0	NA	NA
UHGV-0111151_54	eggNOG-mapper	500635.MITSMUL_03827	NA	NA
UHGV-0111151_54	Pfam	PF14020	NA	DUF4236
UHGV-0111151_55	UniRef90	UniRef90_A0A1Y4A0E8	SAP domain-containing protein	NA
UHGV-0111151_55	eggNOG-mapper	1280696.ATVY01000034_gene3237	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0111151_55	Structural annotation	PF12688	NA	NA
UHGV-0111151_57	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0111151_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0111151_57	UniRef90	UniRef90_A0A1Y4H5B2	HTH cro/C1-type domain-containing protein	NA
UHGV-0111151_57	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0111151_57	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0111151_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111151_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111151_57	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0111151_60	Structural annotation	PF20432, NF041951, COG3655	NA	NA
UHGV-0111151_61	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-0111151_68	PHROG	phrog_14970	NA	unknown function
UHGV-0111151_68	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-0111151_68	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-0111151_68	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0111151_68	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0111151_68	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0111151_69	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0111151_69	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0111151_69	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0111151_69	Structural annotation	PF05772	NA	NA
UHGV-0111151_70	UniRef90	UniRef90_UPI001D05CADB	HNH endonuclease	NA
UHGV-0111151_70	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0111151_70	Pfam	PF13391	HNH endonuclease	HNH_2
UHGV-0111151_71	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0111151_71	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0111151_71	UniRef90	UniRef90_A0A8J6J1Z1	Single-stranded DNA-binding protein	NA
UHGV-0111151_71	eggNOG-mapper	1378168.N510_01674	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0111151_71	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0111151_71	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0111151_71	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0111151_71	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0111151_71	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0111151_72	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0111151_72	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0111151_72	UniRef90	UniRef90_A0A1M7U3A2	Holliday junction resolvase RusA (Prophage-encoded endonuclease)	NA
UHGV-0111151_72	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0111151_72	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0111151_72	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0111151_72	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0111151_73	PHROG	phrog_4973	NA	unknown function
UHGV-0111151_73	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0111151_73	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0111151_73	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0111151_73	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-0111151_74	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0111151_74	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0111151_74	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0111151_74	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0111151_74	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0111151_74	Structural annotation	PF14297	NA	NA
UHGV-0111151_77	PHROG	phrog_4433	NA	unknown function
UHGV-0111151_77	eggNOG-mapper	445970.ALIPUT_01592	DNA-templated transcription, initiation	NA
UHGV-0111151_77	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA