UHGV-0111245

Genome information

vOTU vOTU-032060

Genome length 25,799 bps

CDS count 32

Completeness 74.06% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111245
vOTU ID	vOTU-032060
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_263012
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.29
Jumbo phage	No

Genome content
Genome length	25,799 bps
GC content	57.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	95.73%
Average CDS length	773.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111245_1	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0111245_1	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0111245_1	UniRef90	UniRef90_A0A074LM49	AbrB family transcriptional regulator	NA
UHGV-0111245_1	eggNOG-mapper	1157490.EL26_11905	Antidote-toxin recognition MazE, bacterial antitoxin	NA
UHGV-0111245_1	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0111245_1	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0111245_1	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0111245_1	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0111245_4	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0111245_4	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0111245_4	Structural annotation	PF21578	NA	NA
UHGV-0111245_5	KOfam	K03700	recU; recombination protein U	NA
UHGV-0111245_5	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0111245_5	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-0111245_5	eggNOG-mapper	537013.CLOSTMETH_01720	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0111245_5	Pfam	PF03838	Recombination protein U	RecU
UHGV-0111245_5	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0111245_5	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0111245_6	PHROG	phrog_38338	NA	unknown function
UHGV-0111245_6	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0111245_6	eggNOG-mapper	693746.OBV_25410	NA	NA
UHGV-0111245_7	PHROG	phrog_8470	NA	unknown function
UHGV-0111245_7	UniRef90	UniRef90_UPI001C1063FF	PcfJ domain-containing protein	NA
UHGV-0111245_7	eggNOG-mapper	1378168.N510_01842	PcfJ-like protein	NA
UHGV-0111245_7	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0111245_7	Structural annotation	PF14284	NA	NA
UHGV-0111245_8	PHROG	phrog_15609	NA	unknown function
UHGV-0111245_8	UniRef90	UniRef90_A0A7G9WGA3	NA	NA
UHGV-0111245_8	eggNOG-mapper	1378168.N510_01841	NA	NA
UHGV-0111245_8	Pfam	PF11300	NA	DUF3102
UHGV-0111245_8	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0111245_8	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0111245_9	PHROG	phrog_5781	NA	unknown function
UHGV-0111245_9	UniRef90	UniRef90_A0A810Q4L2	NA	NA
UHGV-0111245_9	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0111245_9	Pfam	PF14359	NA	DUF4406
UHGV-0111245_9	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0111245_9	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0111245_11	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0111245_11	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0111245_11	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0111245_11	Pfam	PF07374	NA	DUF1492
UHGV-0111245_11	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0111245_12	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0111245_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0111245_13	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0111245_13	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0111245_13	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0111245_13	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0111245_13	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0111245_13	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0111245_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0111245_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111245_13	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0111245_14	PHROG	phrog_1233	NA	unknown function
UHGV-0111245_14	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-0111245_14	Structural annotation	PF13058	NA	NA
UHGV-0111245_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-0111245_15	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0111245_15	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0111245_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0111245_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0111245_16	UniRef90	UniRef90_A0A355KVT5	Phage capsid protein (Fragment)	NA
UHGV-0111245_16	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0111245_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0111245_16	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0111245_16	COG	COG2369	NA	NA
UHGV-0111245_16	Structural annotation	PF06152, PF18812	NA	NA
UHGV-0111245_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0111245_17	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0111245_17	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0111245_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0111245_17	Structural annotation	PF06810	NA	NA
UHGV-0111245_18	PHROG	phrog_267	major head protein	head and packaging
UHGV-0111245_18	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-0111245_18	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0111245_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0111245_19	eggNOG-mapper	33035.JPJF01000106_gene3131	NA	NA
UHGV-0111245_20	PHROG	phrog_3366	NA	unknown function
UHGV-0111245_20	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0111245_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0111245_21	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0111245_21	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0111245_21	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0111245_21	Structural annotation	PF11114	NA	NA
UHGV-0111245_22	PHROG	phrog_3266	tail completion	connector
UHGV-0111245_22	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0111245_22	Structural annotation	PF12691	NA	NA
UHGV-0111245_23	PHROG	phrog_3099	NA	unknown function
UHGV-0111245_23	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0111245_23	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0111245_24	PHROG	phrog_11299	NA	unknown function
UHGV-0111245_24	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0111245_24	Structural annotation	PF10666	NA	NA
UHGV-0111245_25	PHROG	phrog_706	NA	unknown function
UHGV-0111245_25	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0111245_25	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0111245_25	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0111245_25	Structural annotation	PF06854	NA	NA
UHGV-0111245_26	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0111245_26	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0111245_26	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0111245_26	COG	COG1511	NA	NA
UHGV-0111245_27	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0111245_28	PHROG	phrog_6616	tail protein	tail
UHGV-0111245_28	Structural annotation	PF13550, PF09931, NF033848, COG3500	NA	NA
UHGV-0111245_29	PHROG	phrog_19976	tail assembly protein	tail
UHGV-0111245_29	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0111245_29	Structural annotation	PF20622	NA	NA
UHGV-0111245_30	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-0111245_30	eggNOG-mapper	610130.Closa_0587	Tyrosine phosphatase family	NA
UHGV-0111245_30	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-0111245_30	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-0111245_30	Structural annotation	PF13350, PF18998, PF17425, COG2365	NA	NA
UHGV-0111245_31	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0111245_31	PHROG	phrog_9611	endolysin	lysis
UHGV-0111245_31	UniRef90	UniRef90_A0A3D1VCL7	N-acetylmuramoyl-L-alanine amidase domain-containing protein (Fragment)	NA
UHGV-0111245_31	eggNOG-mapper	97138.C820_00738	Ami_2	NA
UHGV-0111245_31	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0111245_31	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0111245_31	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0111245_31	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0111245_32	UniRef90	UniRef90_R5AT18	Toxin secretion/phage lysis holin	NA
UHGV-0111245_32	eggNOG-mapper	742738.HMPREF9460_01388	Bacteriophage holin family	NA
UHGV-0111245_32	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0111245_32	COG	COG4824	Phage-related holin (Lysis protein)	NA