UHGV-0111355

Genome information

Genome length 46,834 bps

CDS count 72

Completeness 87.67% (medium-quality)

geNomad score 0.9708

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111355
vOTU ID	vOTU-025769
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_244434
BioSample	SAMEA3708746
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9708
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.96
Jumbo phage	No

Genome content
Genome length	46,834 bps
GC content	48.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	88.54%
Average CDS length	579.88 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111355_1	UniRef90	UniRef90_B0MUK2	SagB-type dehydrogenase domain protein	NA
UHGV-0111355_1	eggNOG-mapper	445970.ALIPUT_00708	Nitroreductase family	NA
UHGV-0111355_1	Pfam	PF00881	Nitroreductase family	Nitroreductase
UHGV-0111355_1	COG	COG0778	Nitroreductase	NA
UHGV-0111355_2	PHROG	phrog_5824	NA	unknown function
UHGV-0111355_2	eggNOG-mapper	445970.ALIPUT_00706	NA	NA
UHGV-0111355_3	eggNOG-mapper	888059.HMPREF9071_2141	Head fiber protein	NA
UHGV-0111355_3	Structural annotation	PF21430, NF009633	NA	NA
UHGV-0111355_4	PHROG	phrog_29	major head protein	head and packaging
UHGV-0111355_4	UniRef90	UniRef90_A0A316NWE1	Major capsid protein E	NA
UHGV-0111355_4	eggNOG-mapper	445970.ALIPUT_00704	NA	NA
UHGV-0111355_4	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0111355_4	Structural annotation	PF03864, MF_04133, NF041162, COG4834	NA	NA
UHGV-0111355_5	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0111355_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0111355_5	UniRef90	UniRef90_A0A143XMI6	Site-specific tyrosine recombinase XerC	NA
UHGV-0111355_5	eggNOG-mapper	679935.Alfi_0474	Arm DNA-binding domain	NA
UHGV-0111355_5	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0111355_5	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0111355_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0111355_5	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0111355_5	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0111355_6	PHROG	phrog_4792	anti-repressor	transcription regulation
UHGV-0111355_6	UniRef90	UniRef90_UPI00189B3756	ORF6N domain-containing protein	NA
UHGV-0111355_6	eggNOG-mapper	445970.ALIPUT_01207	PFAM ORF6N domain	NA
UHGV-0111355_6	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0111355_6	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0111355_6	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0111355_7	UniRef90	UniRef90_B0MVP4	DNA-binding helix-turn-helix protein	NA
UHGV-0111355_7	eggNOG-mapper	445970.ALIPUT_01205	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0111355_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0111355_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111355_7	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0111355_9	PHROG	phrog_1086	NA	unknown function
UHGV-0111355_9	UniRef90	UniRef90_UPI001D0859DC	SH3 beta-barrel fold-containing protein	NA
UHGV-0111355_9	eggNOG-mapper	435591.BDI_0847	NA	NA
UHGV-0111355_9	Pfam	PF10902	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
UHGV-0111355_9	Structural annotation	PF10902	NA	NA
UHGV-0111355_16	UniRef90	UniRef90_A0A143XL61	Helix-turn-helix domain protein	NA
UHGV-0111355_16	eggNOG-mapper	880526.KE386488_gene1381	Helix-turn-helix domain	NA
UHGV-0111355_16	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0111355_16	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0111355_17	Structural annotation	PF14090, MF_01909, NF038251, COG5625	NA	NA
UHGV-0111355_18	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0111355_18	UniRef90	UniRef90_R6YAW6	NA	NA
UHGV-0111355_18	eggNOG-mapper	367737.Abu_1347	NA	NA
UHGV-0111355_18	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0111355_18	Structural annotation	PF19808	NA	NA
UHGV-0111355_19	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0111355_19	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0111355_19	UniRef90	UniRef90_A0A174HEH1	DNA helicase	NA
UHGV-0111355_19	eggNOG-mapper	1203611.KB894553_gene2367	Participates in initiation and elongation during chromosome replication	NA
UHGV-0111355_19	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0111355_19	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0111355_19	COG	COG0305	Replicative DNA helicase	NA
UHGV-0111355_19	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0111355_21	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0111355_21	UniRef90	UniRef90_A0A088C3S3	Terminase small subunit	NA
UHGV-0111355_21	eggNOG-mapper	445970.ALIPUT_01194	NA	NA
UHGV-0111355_21	Structural annotation	PF07141	NA	NA
UHGV-0111355_22	eggNOG-mapper	1235803.C825_02655	NA	NA
UHGV-0111355_25	PHROG	phrog_16646	NA	unknown function
UHGV-0111355_25	eggNOG-mapper	411477.PARMER_01697	NA	NA
UHGV-0111355_25	Pfam	PF20449	NA	DUF6706
UHGV-0111355_25	Structural annotation	PF20449	NA	NA
UHGV-0111355_26	PHROG	phrog_13251	NA	unknown function
UHGV-0111355_26	Structural annotation	PF20536	NA	NA
UHGV-0111355_27	PHROG	phrog_5377	NA	unknown function
UHGV-0111355_27	UniRef90	UniRef90_UPI0008DA4DD0	HK97 gp10 family phage protein	NA
UHGV-0111355_27	eggNOG-mapper	445970.ALIPUT_00701	NA	NA
UHGV-0111355_27	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0111355_28	PHROG	phrog_5597	NA	unknown function
UHGV-0111355_28	Structural annotation	PF05657	NA	NA
UHGV-0111355_29	PHROG	phrog_6767	NA	unknown function
UHGV-0111355_29	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0111355_30	Structural annotation	PF20336	NA	NA
UHGV-0111355_31	PHROG	phrog_10156	NA	unknown function
UHGV-0111355_31	eggNOG-mapper	445970.ALIPUT_00697	NA	NA
UHGV-0111355_32	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0111355_32	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0111355_32	UniRef90	UniRef90_B0MUJ0	TMP_3 domain-containing protein	NA
UHGV-0111355_32	eggNOG-mapper	445970.ALIPUT_00696	NA	NA
UHGV-0111355_32	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0111355_32	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0111355_32	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0111355_32	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0111355_33	PHROG	phrog_6305	tail protein	tail
UHGV-0111355_33	eggNOG-mapper	445970.ALIPUT_00695	NA	NA
UHGV-0111355_33	Structural annotation	PF11514, TIGR01633, COG4722	NA	NA
UHGV-0111355_34	PHROG	phrog_11623	NA	unknown function
UHGV-0111355_34	UniRef90	UniRef90_B0MUL9	NA	NA
UHGV-0111355_34	eggNOG-mapper	445970.ALIPUT_00693	NA	NA
UHGV-0111355_34	Pfam	PF12873	NA	DUF3825
UHGV-0111355_34	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0111355_34	Structural annotation	PF12873	NA	NA
UHGV-0111355_35	PHROG	phrog_17422	NA	unknown function
UHGV-0111355_35	eggNOG-mapper	445970.ALIPUT_01638	cellulase activity	NA
UHGV-0111355_35	COG	COG4926	Phage-related protein	NA
UHGV-0111355_36	UniRef90	UniRef90_B0MX98	Toxin secretion/phage lysis holin	NA
UHGV-0111355_36	eggNOG-mapper	445970.ALIPUT_01637	Bacteriophage holin family	NA
UHGV-0111355_36	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0111355_36	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0111355_37	PHROG	phrog_873	endolysin	head and packaging
UHGV-0111355_37	UniRef90	UniRef90_UPI0018ABA41D	structural protein P5	NA
UHGV-0111355_37	eggNOG-mapper	411477.PARMER_01682	NA	NA
UHGV-0111355_38	Pfam	PF20647	NA	DUF6808
UHGV-0111355_38	Structural annotation	PF20647	NA	NA
UHGV-0111355_39	eggNOG-mapper	411477.PARMER_00348	NA	NA
UHGV-0111355_40	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-0111355_40	eggNOG-mapper	445970.ALIPUT_01633	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0111355_40	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0111355_41	PHROG	phrog_16490	NA	unknown function
UHGV-0111355_41	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-0111355_41	eggNOG-mapper	445970.ALIPUT_01632	NA	NA
UHGV-0111355_42	PHROG	phrog_31654	NA	unknown function
UHGV-0111355_42	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0111355_43	eggNOG-mapper	742725.HMPREF9450_02107	NA	NA
UHGV-0111355_43	Structural annotation	PF10781	NA	NA
UHGV-0111355_45	PHROG	phrog_38431	NA	unknown function
UHGV-0111355_45	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0111355_45	eggNOG-mapper	445970.ALIPUT_01628	NA	NA
UHGV-0111355_46	eggNOG-mapper	742725.HMPREF9450_02112	NA	NA
UHGV-0111355_48	PHROG	phrog_35741	NA	unknown function
UHGV-0111355_48	eggNOG-mapper	445970.ALIPUT_01619	NA	NA
UHGV-0111355_50	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-0111355_52	PHROG	phrog_8684	NA	unknown function
UHGV-0111355_52	UniRef90	UniRef90_B0MWV9	YopX domain-containing protein	NA
UHGV-0111355_52	eggNOG-mapper	445970.ALIPUT_01614	YopX protein	NA
UHGV-0111355_52	Pfam	PF09643	YopX protein	YopX
UHGV-0111355_52	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0111355_52	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0111355_53	PHROG	phrog_20182	NA	unknown function
UHGV-0111355_54	UniRef90	UniRef90_A0A5M5CBB8	YopX domain-containing protein	NA
UHGV-0111355_54	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0111355_55	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0111355_55	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0111355_55	UniRef90	UniRef90_A0A1Q6F298	Cytosine-specific methyltransferase	NA
UHGV-0111355_55	eggNOG-mapper	445970.ALIPUT_00030	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0111355_55	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0111355_55	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0111355_55	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0111355_55	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0111355_55	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0111355_56	eggNOG-mapper	445970.ALIPUT_00029	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0111355_56	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0111355_58	eggNOG-mapper	1173028.ANKO01000084_gene935	N-6 DNA Methylase	NA
UHGV-0111355_58	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0111355_59	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0111355_59	UniRef90	UniRef90_B0MSF8	MazG nucleotide pyrophosphohydrolase domain protein	NA
UHGV-0111355_59	eggNOG-mapper	445970.ALIPUT_00029	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0111355_59	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0111355_59	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0111355_59	Structural annotation	TIGR03188, COG1694	NA	NA
UHGV-0111355_60	Pfam	PF14608	RNA-binding, Nab2-type zinc finger	zf-CCCH_2
UHGV-0111355_60	Structural annotation	MF_00387, TIGR03992, COG2171	NA	NA
UHGV-0111355_62	PHROG	phrog_824	NA	unknown function
UHGV-0111355_62	UniRef90	UniRef90_A0A143XP07	VRR-NUC domain protein	NA
UHGV-0111355_62	eggNOG-mapper	445970.ALIPUT_00026	NA	NA
UHGV-0111355_63	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0111355_63	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0111355_63	UniRef90	UniRef90_A0A1M5AR60	DNA replication protein DnaC	NA
UHGV-0111355_63	eggNOG-mapper	445970.ALIPUT_01605	NA	NA
UHGV-0111355_63	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0111355_64	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0111355_64	UniRef90	UniRef90_B0MWU9	NA	NA
UHGV-0111355_64	eggNOG-mapper	445970.ALIPUT_01604	NA	NA
UHGV-0111355_64	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0111355_64	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0111355_65	eggNOG-mapper	742725.HMPREF9450_02078	NA	NA
UHGV-0111355_67	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-0111355_69	UniRef90	UniRef90_UPI0018977E4B	Rad52/Rad22 family DNA repair protein	NA
UHGV-0111355_69	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0111355_69	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-0111355_72	PHROG	phrog_27197	NA	unknown function
UHGV-0111355_72	eggNOG-mapper	445970.ALIPUT_01221	DNA-templated transcription, initiation	NA
UHGV-0111355_72	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0111355_72	Structural annotation	NF007410	NA	NA