UHGV-0111372

Genome information

Genome length 39,129 bps

CDS count 53

Completeness 96.37% (high-quality)

geNomad score 0.9695

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111372
vOTU ID	vOTU-062802
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_244974
BioSample	SAMEA3708812
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.37% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9695
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.22
Jumbo phage	No

Genome content
Genome length	39,129 bps
GC content	36.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.30%
Average CDS length	685.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111372_1	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-0111372_1	PHROG	phrog_7573	NA	unknown function
UHGV-0111372_1	UniRef90	UniRef90_A0A174Z0E5	Manganese catalase family protein	NA
UHGV-0111372_1	eggNOG-mapper	515620.EUBELI_00515	NA	NA
UHGV-0111372_1	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-0111372_1	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-0111372_1	Structural annotation	PF02185, MF_01506, TIGR04535, COG3546	NA	NA
UHGV-0111372_2	Structural annotation	PF19495, TIGR03931	NA	NA
UHGV-0111372_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0111372_3	PHROG	phrog_291	endolysin	lysis
UHGV-0111372_3	UniRef90	UniRef90_A0A415MEE0	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0111372_3	eggNOG-mapper	515620.EUBELI_01316	Glycoside Hydrolase Family 25-like lysozyme endolysin	NA
UHGV-0111372_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0111372_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0111372_3	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0111372_4	PHROG	phrog_1129	holin	lysis
UHGV-0111372_4	UniRef90	UniRef90_A0A356C4S4	Enolase	NA
UHGV-0111372_4	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0111372_4	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0111372_4	Structural annotation	PF06946	NA	NA
UHGV-0111372_5	PHROG	phrog_1863	NA	unknown function
UHGV-0111372_5	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0111372_6	PHROG	phrog_3558	tail protein	tail
UHGV-0111372_6	UniRef90	UniRef90_UPI000E5CB7B2	phage tail protein	NA
UHGV-0111372_6	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0111372_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0111372_6	COG	COG4926	Phage-related protein	NA
UHGV-0111372_6	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0111372_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0111372_7	UniRef90	UniRef90_UPI000E5CE8E9	phage tail family protein	NA
UHGV-0111372_7	eggNOG-mapper	411465.PEPMIC_00745	NA	NA
UHGV-0111372_7	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0111372_7	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0111372_7	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0111372_8	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0111372_8	UniRef90	UniRef90_UPI0016512790	phage tail tape measure protein	NA
UHGV-0111372_8	eggNOG-mapper	1201292.DR75_1631	Phage-related minor tail protein	NA
UHGV-0111372_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0111372_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0111372_8	COG	COG5283	Phage-related tail protein	NA
UHGV-0111372_8	Structural annotation	PF10145, TIGR01760, TIGR01844, COG5280, COG1538	NA	NA
UHGV-0111372_10	PHROG	phrog_1021	NA	unknown function
UHGV-0111372_10	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0111372_11	PHROG	phrog_885	major tail protein	tail
UHGV-0111372_11	eggNOG-mapper	1235800.C819_02228	NA	NA
UHGV-0111372_11	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0111372_12	PHROG	phrog_957	head protein	head and packaging
UHGV-0111372_12	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0111372_12	Structural annotation	PF12691	NA	NA
UHGV-0111372_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0111372_13	UniRef90	UniRef90_UPI000E5D9FC1	HK97 gp10 family phage protein	NA
UHGV-0111372_13	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0111372_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0111372_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0111372_14	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0111372_14	UniRef90	UniRef90_UPI0016516CE8	head-tail adaptor protein	NA
UHGV-0111372_14	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0111372_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0111372_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0111372_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0111372_15	PHROG	phrog_1236	head protein	head and packaging
UHGV-0111372_15	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0111372_15	Structural annotation	PF05135	NA	NA
UHGV-0111372_16	PHROG	phrog_544	major head protein	head and packaging
UHGV-0111372_16	UniRef90	UniRef90_UPI000E5CD0B7	N4-gp56 family major capsid protein	NA
UHGV-0111372_16	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0111372_16	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0111372_16	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0111372_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0111372_17	UniRef90	UniRef90_UPI000E5C7AD7	phage scaffolding protein	NA
UHGV-0111372_17	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-0111372_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0111372_17	Structural annotation	PF06810	NA	NA
UHGV-0111372_18	UniRef90	UniRef90_UPI000E5D2CA2	pyocin knob domain-containing protein	NA
UHGV-0111372_19	PHROG	phrog_372	tail protein	tail
UHGV-0111372_19	UniRef90	UniRef90_UPI000E5CC2C3	NA	NA
UHGV-0111372_19	eggNOG-mapper	445974.CLORAM_02918	NA	NA
UHGV-0111372_19	Pfam	PF05895	NA	DUF859
UHGV-0111372_19	COG	COG4675	Phage tail collar domain	NA
UHGV-0111372_19	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0111372_22	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0111372_22	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0111372_22	UniRef90	UniRef90_A0A3A6JBL8	Phage_Mu_F domain-containing protein	NA
UHGV-0111372_22	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0111372_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0111372_22	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0111372_22	COG	COG2369	NA	NA
UHGV-0111372_22	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0111372_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-0111372_23	UniRef90	UniRef90_UPI000E5D0BC3	phage portal protein	NA
UHGV-0111372_23	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0111372_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0111372_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0111372_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0111372_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0111372_24	UniRef90	UniRef90_UPI000E5CEDAF	PBSX family phage terminase large subunit	NA
UHGV-0111372_24	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0111372_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0111372_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0111372_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0111372_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111372_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0111372_25	PHROG	phrog_1233	NA	unknown function
UHGV-0111372_25	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-0111372_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0111372_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0111372_26	UniRef90	UniRef90_A0A413YU49	Terminase small subunit	NA
UHGV-0111372_26	eggNOG-mapper	1499683.CCFF01000014_gene3916	Terminase small subunit	NA
UHGV-0111372_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0111372_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0111372_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0111372_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0111372_27	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0111372_27	Structural annotation	PF02996	NA	NA
UHGV-0111372_28	PHROG	phrog_625	NA	unknown function
UHGV-0111372_28	UniRef90	UniRef90_A0A413YU40	ASCH domain-containing protein	NA
UHGV-0111372_28	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-0111372_28	Structural annotation	PF12961, COG2028	NA	NA
UHGV-0111372_31	PHROG	phrog_20593	NA	unknown function
UHGV-0111372_34	PHROG	phrog_8684	NA	unknown function
UHGV-0111372_34	UniRef90	UniRef90_A0A413YU53	YopX domain-containing protein	NA
UHGV-0111372_34	eggNOG-mapper	476272.RUMHYD_03337	NA	NA
UHGV-0111372_34	Pfam	PF09643	YopX protein	YopX
UHGV-0111372_34	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0111372_35	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0111372_35	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111372_35	UniRef90	UniRef90_A0A413YU08	HNH endonuclease	NA
UHGV-0111372_35	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0111372_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0111372_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0111372_35	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0111372_37	PHROG	phrog_15077	NA	unknown function
UHGV-0111372_37	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0111372_37	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-0111372_37	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0111372_38	PHROG	phrog_8470	NA	unknown function
UHGV-0111372_38	UniRef90	UniRef90_UPI00164C094F	PcfJ domain-containing protein	NA
UHGV-0111372_38	eggNOG-mapper	483218.BACPEC_01166	PcfJ-like protein	NA
UHGV-0111372_38	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0111372_38	Structural annotation	PF14284	NA	NA
UHGV-0111372_39	eggNOG-mapper	483218.BACPEC_01167	NA	NA
UHGV-0111372_40	PHROG	phrog_7566	NA	unknown function
UHGV-0111372_40	eggNOG-mapper	742740.HMPREF9474_04319	NA	NA
UHGV-0111372_41	Structural annotation	PF19962, NF011863	NA	NA
UHGV-0111372_42	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0111372_42	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0111372_42	UniRef90	UniRef90_A0A413YU26	RNase H type-1 domain-containing protein	NA
UHGV-0111372_42	eggNOG-mapper	411902.CLOBOL_05701	RNase H	NA
UHGV-0111372_42	Pfam	PF00075	RNase H	RNase_H
UHGV-0111372_42	COG	COG0328	Ribonuclease HI	NA
UHGV-0111372_42	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0111372_43	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0111372_43	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0111372_43	eggNOG-mapper	742741.HMPREF9475_00404	NA	NA
UHGV-0111372_43	Structural annotation	PF21578	NA	NA
UHGV-0111372_48	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0111372_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0111372_48	UniRef90	UniRef90_A0A356C4L0	XRE family transcriptional regulator	NA
UHGV-0111372_48	eggNOG-mapper	1035189.HMPREF9954_1968	sequence-specific DNA binding	NA
UHGV-0111372_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111372_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0111372_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0111372_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0111372_49	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0111372_49	UniRef90	UniRef90_A0A6N7Y5A0	DNA-binding protein	NA
UHGV-0111372_49	eggNOG-mapper	411470.RUMGNA_03230	sequence-specific DNA binding	NA
UHGV-0111372_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111372_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111372_50	PHROG	phrog_87	metallo-protease	other
UHGV-0111372_50	UniRef90	UniRef90_A0A373INP4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0111372_50	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-0111372_50	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0111372_50	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0111372_50	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0111372_51	Pfam	PF21646	Actin maturation protease-like, C-terminal domain	ACTMAP-like_C
UHGV-0111372_51	Structural annotation	PF21646, COG3271	NA	NA
UHGV-0111372_52	eggNOG-mapper	1378168.N510_03179	SWIM zinc finger	NA
UHGV-0111372_52	Pfam	PF04434	SWIM zinc finger	SWIM
UHGV-0111372_53	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0111372_53	PHROG	phrog_95	integrase	integration and excision
UHGV-0111372_53	UniRef90	UniRef90_UPI001C0F7357	recombinase family protein	NA
UHGV-0111372_53	eggNOG-mapper	1256908.HMPREF0373_00206	Resolvase, N terminal domain	NA
UHGV-0111372_53	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0111372_53	Pfam	PF07508	Recombinase	Recombinase
UHGV-0111372_53	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0111372_53	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA