UHGV-0111397

Genome information

Genome length 37,206 bps

CDS count 67

Completeness 97.17% (high-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111397
vOTU ID	vOTU-014072
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_249387
BioSample	SAMEA3708790
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.17% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.25
Jumbo phage	No

Genome content
Genome length	37,206 bps
GC content	30.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	89.59%
Average CDS length	500.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111397_4	KOfam	K19449	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	NA
UHGV-0111397_4	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0111397_4	UniRef90	UniRef90_R5YVI1	HTH-type transcriptional regulator SinR	NA
UHGV-0111397_4	eggNOG-mapper	86416.Clopa_3404	helix-turn-helix	NA
UHGV-0111397_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0111397_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0111397_4	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0111397_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111397_4	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0111397_6	PHROG	phrog_36767	NA	unknown function
UHGV-0111397_6	UniRef90	UniRef90_A0A7V4T1A1	NA	NA
UHGV-0111397_6	eggNOG-mapper	179408.Osc7112_5073	NA	NA
UHGV-0111397_6	Pfam	PF10049	NA	DUF2283
UHGV-0111397_6	Structural annotation	PF10049, COG5428	NA	NA
UHGV-0111397_9	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-0111397_9	PHROG	phrog_35436	amidase	lysis
UHGV-0111397_9	UniRef90	UniRef90_UPI001C3866C0	peptidoglycan recognition protein family protein	NA
UHGV-0111397_9	eggNOG-mapper	748727.CLJU_c32580	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0111397_9	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0111397_9	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0111397_9	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0111397_9	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0111397_10	PHROG	phrog_13256	NA	unknown function
UHGV-0111397_10	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0111397_11	PHROG	phrog_13632	NA	unknown function
UHGV-0111397_11	eggNOG-mapper	508419.F8J177_9CAUD	NA	NA
UHGV-0111397_12	PHROG	phrog_5717	tail protein	tail
UHGV-0111397_12	UniRef90	UniRef90_A0A4U8Q6R4	Baseplate wedge subunit and tail pin	NA
UHGV-0111397_12	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0111397_12	COG	COG4675	Phage tail collar domain	NA
UHGV-0111397_13	Structural annotation	PF09343	NA	NA
UHGV-0111397_14	PHROG	phrog_5668	tail fiber protein	tail
UHGV-0111397_14	UniRef90	UniRef90_R7ITT1	Phage minor structural protein	NA
UHGV-0111397_14	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-0111397_14	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0111397_14	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-0111397_15	PHROG	phrog_1194	NA	unknown function
UHGV-0111397_15	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-0111397_16	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0111397_16	eggNOG-mapper	1123304.AQYA01000037_gene233	phage tail tape measure protein	NA
UHGV-0111397_16	COG	COG5412	Phage-related protein	NA
UHGV-0111397_16	Structural annotation	PF09486, TIGR02559	NA	NA
UHGV-0111397_17	PHROG	phrog_706	NA	unknown function
UHGV-0111397_17	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-0111397_17	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-0111397_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0111397_17	Structural annotation	PF06854	NA	NA
UHGV-0111397_18	Structural annotation	PF10666	NA	NA
UHGV-0111397_19	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0111397_19	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0111397_19	UniRef90	UniRef90_R6HDY3	Bro-N domain-containing protein	NA
UHGV-0111397_19	eggNOG-mapper	1033733.CAEK01000007_gene1684	BRO family, N-terminal domain protein	NA
UHGV-0111397_19	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0111397_19	COG	COG3617	Prophage antirepressor	NA
UHGV-0111397_19	Structural annotation	PF03374, COG3645	NA	NA
UHGV-0111397_20	PHROG	phrog_2977	anti-repressor	transcription regulation
UHGV-0111397_20	UniRef90	UniRef90_R6H349	Bro-N domain-containing protein	NA
UHGV-0111397_20	eggNOG-mapper	1415774.U728_781	Phage antirepressor protein KilAC domain	NA
UHGV-0111397_20	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0111397_20	COG	COG3617	Prophage antirepressor	NA
UHGV-0111397_22	UniRef90	UniRef90_A0A356AIQ0	RHH_1 domain-containing protein	NA
UHGV-0111397_22	eggNOG-mapper	1105031.HMPREF1141_1146	NA	NA
UHGV-0111397_22	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0111397_23	UniRef90	UniRef90_A0A5C4RZ16	Zinc-ribbon domain and TM2 domain-containing protein	NA
UHGV-0111397_23	COG	COG0265	Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain	NA
UHGV-0111397_24	PHROG	phrog_3099	NA	unknown function
UHGV-0111397_24	eggNOG-mapper	469596.HMPREF9488_01325	NA	NA
UHGV-0111397_24	Structural annotation	PF09393, TIGR02126, COG5437	NA	NA
UHGV-0111397_25	PHROG	phrog_3266	tail completion	connector
UHGV-0111397_25	UniRef90	UniRef90_UPI001CF15A1F	chloramphenicol resistance protein	NA
UHGV-0111397_25	eggNOG-mapper	411473.RUMCAL_01934	NA	NA
UHGV-0111397_25	Structural annotation	PF12691	NA	NA
UHGV-0111397_26	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0111397_26	UniRef90	UniRef90_A0A174E6U4	Minor capsid	NA
UHGV-0111397_26	eggNOG-mapper	1304866.K413DRAFT_3041	NA	NA
UHGV-0111397_26	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0111397_26	Structural annotation	PF11114	NA	NA
UHGV-0111397_27	PHROG	phrog_3366	NA	unknown function
UHGV-0111397_27	Pfam	PF20536	NA	DUF6751
UHGV-0111397_27	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0111397_28	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0111397_28	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0111397_29	PHROG	phrog_283	major head protein	head and packaging
UHGV-0111397_29	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0111397_29	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0111397_29	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0111397_29	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0111397_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0111397_30	UniRef90	UniRef90_R6XV28	Phage minor structural protein GP20	NA
UHGV-0111397_30	eggNOG-mapper	1399941.U3PIU5_9CAUD	Phage minor structural protein GP20	NA
UHGV-0111397_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0111397_30	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0111397_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0111397_31	UniRef90	UniRef90_R6YG84	CdiA_C domain-containing protein	NA
UHGV-0111397_31	eggNOG-mapper	1462526.BN990_03872	Phage minor capsid protein 2	NA
UHGV-0111397_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0111397_31	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0111397_31	COG	COG2369	NA	NA
UHGV-0111397_31	Structural annotation	PF06152, PF21814	NA	NA
UHGV-0111397_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0111397_32	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-0111397_32	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0111397_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0111397_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0111397_33	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0111397_33	UniRef90	UniRef90_R6DVT6	Phage terminase large subunit PBSX family	NA
UHGV-0111397_33	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0111397_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0111397_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0111397_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111397_33	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0111397_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0111397_37	UniRef90	UniRef90_UPI000377A925	NA	NA
UHGV-0111397_37	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0111397_37	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0111397_37	Structural annotation	PF04545, MF_00962, TIGR02984, COG1191	NA	NA
UHGV-0111397_44	Pfam	PF04703	FaeA-like protein	FaeA
UHGV-0111397_44	Structural annotation	PF03444, MF_01586, NF011960, COG1846	NA	NA
UHGV-0111397_45	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0111397_47	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0111397_48	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0111397_48	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0111397_48	UniRef90	UniRef90_UPI001C9B639A	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0111397_48	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-0111397_48	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0111397_48	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0111397_48	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0111397_50	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0111397_50	eggNOG-mapper	1250232.JQNJ01000001_gene2876	Leucine rich repeats (6 copies)	NA
UHGV-0111397_50	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0111397_50	Structural annotation	NF007410	NA	NA
UHGV-0111397_51	PHROG	phrog_1123	NA	unknown function
UHGV-0111397_51	eggNOG-mapper	1560313.A0A0D3MSU0_9CAUD	NA	NA
UHGV-0111397_51	Structural annotation	PF03551, TIGR02719, COG1695	NA	NA
UHGV-0111397_52	PHROG	phrog_9804	NA	unknown function
UHGV-0111397_52	UniRef90	UniRef90_UPI00058D49CF	replicative helicase loader/inhibitor	NA
UHGV-0111397_52	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0111397_52	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0111397_52	Structural annotation	PF11417	NA	NA
UHGV-0111397_53	PHROG	phrog_9327	primosomal protein	DNA, RNA and nucleotide metabolism
UHGV-0111397_53	UniRef90	UniRef90_A0A7C1NSM7	NA	NA
UHGV-0111397_53	eggNOG-mapper	927704.SELR_18440	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0111397_53	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0111397_54	PHROG	phrog_7566	NA	unknown function
UHGV-0111397_54	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0111397_55	PHROG	phrog_1389	NA	unknown function
UHGV-0111397_55	eggNOG-mapper	1033737.CAEV01000076_gene535	NA	NA
UHGV-0111397_55	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0111397_56	PHROG	phrog_862	NA	unknown function
UHGV-0111397_56	eggNOG-mapper	472175.EL18_02118	NA	NA
UHGV-0111397_56	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0111397_57	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0111397_57	UniRef90	UniRef90_UPI00051BDF29	siphovirus Gp157 family protein	NA
UHGV-0111397_57	eggNOG-mapper	97138.C820_00779	Siphovirus Gp157	NA
UHGV-0111397_57	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0111397_57	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0111397_59	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0111397_59	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0111397_59	UniRef90	UniRef90_R6Y144	Transcriptional regulator AbrB family	NA
UHGV-0111397_59	eggNOG-mapper	1145276.T479_16390	Transition state regulator Abh	NA
UHGV-0111397_59	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0111397_59	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0111397_59	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0111397_59	Structural annotation	PF04014, TIGR01439, COG2002	NA	NA
UHGV-0111397_62	Structural annotation	PF07471, NF033787	NA	NA
UHGV-0111397_63	PHROG	phrog_3292	NA	unknown function
UHGV-0111397_63	UniRef90	UniRef90_UPI000DE379A1	KTSC domain-containing protein	NA
UHGV-0111397_63	eggNOG-mapper	1121342.AUCO01000012_gene1704	KTSC domain	NA
UHGV-0111397_63	Pfam	PF13619	KTSC domain	KTSC
UHGV-0111397_63	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-0111397_63	Structural annotation	PF13619	NA	NA
UHGV-0111397_64	PHROG	phrog_4621	NA	unknown function
UHGV-0111397_64	eggNOG-mapper	1196322.A370_02090	NA	NA
UHGV-0111397_65	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0111397_65	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0111397_65	UniRef90	UniRef90_UPI000471D82B	helix-turn-helix domain-containing protein	NA
UHGV-0111397_65	eggNOG-mapper	494416.AYXN01000040_gene2433	PFAM helix-turn-helix domain protein	NA
UHGV-0111397_65	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0111397_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111397_65	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111397_65	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0111397_66	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0111397_66	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0111397_66	UniRef90	UniRef90_R5YSE6	Peptidase_S24 domain-containing protein	NA
UHGV-0111397_66	eggNOG-mapper	1403313.AXBR01000018_gene3552	Peptidase S24-like	NA
UHGV-0111397_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111397_66	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0111397_66	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0111397_66	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0111397_67	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0111397_67	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0111397_67	UniRef90	UniRef90_R6YSE9	PemK-like protein	NA
UHGV-0111397_67	eggNOG-mapper	1273103.NM10_02422	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0111397_67	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0111397_67	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA