UHGV-0111400

Genome information

Genome length 41,367 bps

CDS count 70

Completeness 99.86% (high-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111400
vOTU ID	vOTU-059666
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_249384
BioSample	SAMEA3708790
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.86% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.65
Jumbo phage	No

Genome content
Genome length	41,367 bps
GC content	53.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	88.42%
Average CDS length	525.30 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111400_2	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0111400_2	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-0111400_2	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0111400_2	Structural annotation	PF16677	NA	NA
UHGV-0111400_4	PHROG	phrog_6244	NA	unknown function
UHGV-0111400_4	eggNOG-mapper	1354300.AUQY01000005_gene215	NA	NA
UHGV-0111400_7	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0111400_7	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0111400_7	UniRef90	UniRef90_A0A416ZA95	Recombinase family protein	NA
UHGV-0111400_7	eggNOG-mapper	411467.BACCAP_02922	Resolvase, N terminal domain	NA
UHGV-0111400_7	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0111400_7	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0111400_7	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0111400_8	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0111400_8	Structural annotation	PF12869, MF_01959, NF009635, COG4085	NA	NA
UHGV-0111400_9	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0111400_9	UniRef90	UniRef90_A0A6I2QXZ5	Phage terminase large subunit	NA
UHGV-0111400_9	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0111400_9	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0111400_9	COG	COG5410	NA	NA
UHGV-0111400_9	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0111400_10	PHROG	phrog_64	portal protein	head and packaging
UHGV-0111400_10	UniRef90	UniRef90_A0A6I2QXE1	Phage portal protein	NA
UHGV-0111400_10	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0111400_10	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0111400_10	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0111400_12	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0111400_12	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0111400_12	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0111400_12	Pfam	PF17236	NA	DUF5309
UHGV-0111400_12	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0111400_13	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-0111400_13	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0111400_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0111400_13	Structural annotation	TIGR01560	NA	NA
UHGV-0111400_14	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0111400_15	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0111400_16	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0111400_17	PHROG	phrog_158	major tail protein	tail
UHGV-0111400_17	UniRef90	UniRef90_UPI00164D954A	phage tail protein	NA
UHGV-0111400_17	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0111400_17	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0111400_17	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0111400_18	UniRef90	UniRef90_UPI0018999178	NA	NA
UHGV-0111400_18	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0111400_18	Pfam	PF16478	NA	DUF5055
UHGV-0111400_18	Structural annotation	PF16478	NA	NA
UHGV-0111400_19	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0111400_20	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0111400_20	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-0111400_20	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0111400_20	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0111400_20	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0111400_21	PHROG	phrog_1194	NA	unknown function
UHGV-0111400_21	UniRef90	UniRef90_A0A4U9RD70	Lj965 prophage protein	NA
UHGV-0111400_21	eggNOG-mapper	673837.D2IZU9_9CAUD	NA	NA
UHGV-0111400_21	Pfam	PF20458	NA	DUF6711
UHGV-0111400_21	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0111400_22	PHROG	phrog_6616	tail protein	tail
UHGV-0111400_22	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0111400_22	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0111400_23	PHROG	phrog_372	tail protein	tail
UHGV-0111400_23	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0111400_23	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0111400_23	Pfam	PF05895	NA	DUF859
UHGV-0111400_23	COG	COG4675	Phage tail collar domain	NA
UHGV-0111400_23	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0111400_24	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0111400_24	Pfam	PF00657	GDSL-like Lipase/Acylhydrolase	Lipase_GDSL
UHGV-0111400_25	PHROG	phrog_1863	NA	unknown function
UHGV-0111400_25	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0111400_26	PHROG	phrog_1129	holin	lysis
UHGV-0111400_26	UniRef90	UniRef90_R5D220	Putative holin	NA
UHGV-0111400_26	eggNOG-mapper	1007096.BAGW01000032_gene1582	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0111400_26	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0111400_26	Structural annotation	PF06946	NA	NA
UHGV-0111400_27	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0111400_27	PHROG	phrog_1493	endolysin	lysis
UHGV-0111400_27	UniRef90	UniRef90_A0A350TLR9	Peptidoglycan-binding domain-containing protein	NA
UHGV-0111400_27	eggNOG-mapper	1504823.CCMM01000008_gene1019	Ami_2	NA
UHGV-0111400_27	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0111400_27	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0111400_27	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0111400_27	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG3023	NA	NA
UHGV-0111400_28	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0111400_31	PHROG	phrog_22984	NA	unknown function
UHGV-0111400_32	PHROG	phrog_16490	NA	unknown function
UHGV-0111400_32	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0111400_33	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0111400_34	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0111400_35	KOfam	K14059	int; integrase	NA
UHGV-0111400_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0111400_35	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0111400_35	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0111400_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0111400_35	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0111400_35	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0111400_36	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0111400_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111400_36	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0111400_37	Structural annotation	NF007257, COG1396	NA	NA
UHGV-0111400_38	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0111400_38	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0111400_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111400_38	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0111400_39	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0111400_41	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0111400_42	Structural annotation	PF07453	NA	NA
UHGV-0111400_43	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0111400_43	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0111400_43	eggNOG-mapper	1203606.HMPREF1526_01889	replication terminator protein, phage associated	NA
UHGV-0111400_44	PHROG	phrog_1029	NA	unknown function
UHGV-0111400_44	eggNOG-mapper	756499.Desde_1052	NA	NA
UHGV-0111400_44	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0111400_47	PHROG	phrog_14970	NA	unknown function
UHGV-0111400_47	eggNOG-mapper	397291.C804_03856	double-strand break repair protein	NA
UHGV-0111400_47	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0111400_47	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0111400_47	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0111400_48	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0111400_48	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0111400_48	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0111400_48	Structural annotation	PF05772	NA	NA
UHGV-0111400_49	PHROG	phrog_7566	NA	unknown function
UHGV-0111400_49	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0111400_49	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0111400_50	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0111400_50	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0111400_51	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0111400_51	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0111400_51	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0111400_51	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0111400_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0111400_51	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0111400_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0111400_51	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0111400_51	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0111400_52	PHROG	phrog_15768	NA	unknown function
UHGV-0111400_52	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0111400_52	eggNOG-mapper	642492.Clole_0946	DnaD domain protein	NA
UHGV-0111400_52	Pfam	PF19808	NA	DUF6291
UHGV-0111400_52	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0111400_52	Structural annotation	PF19808	NA	NA
UHGV-0111400_53	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0111400_53	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0111400_53	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0111400_53	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0111400_53	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0111400_53	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0111400_53	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0111400_56	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0111400_56	eggNOG-mapper	1235797.C816_01664	COG NOG12663 non supervised orthologous group	NA
UHGV-0111400_56	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0111400_63	PHROG	phrog_22543	NA	unknown function
UHGV-0111400_63	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0111400_66	eggNOG-mapper	657322.FPR_23130	NA	NA
UHGV-0111400_67	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0111400_67	UniRef90	UniRef90_A0A6N9PX21	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0111400_67	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0111400_67	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0111400_67	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0111400_70	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0111400_70	Structural annotation	TIGR01636	NA	NA