UHGV-0111427

Genome information

Genome length 39,564 bps

CDS count 59

Completeness 100.00% (complete)

geNomad score 0.9635

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111427
vOTU ID	vOTU-045649
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253477
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9635
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.08
Jumbo phage	No

Genome content
Genome length	39,564 bps
GC content	41.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	87.91%
Average CDS length	593.70 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111427_2	PHROG	phrog_7344	terminase small subunit	head and packaging
UHGV-0111427_2	UniRef90	UniRef90_UPI001E5ED65F	helix-turn-helix domain-containing protein	NA
UHGV-0111427_2	eggNOG-mapper	1423755.BAML01000009_gene780	NA	NA
UHGV-0111427_2	Structural annotation	PF13022	NA	NA
UHGV-0111427_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0111427_3	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0111427_3	UniRef90	UniRef90_A0A3C1I7N1	PBSX family phage terminase large subunit	NA
UHGV-0111427_3	eggNOG-mapper	764291.STRUR_2108	Phage terminase, large subunit	NA
UHGV-0111427_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0111427_3	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0111427_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0111427_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111427_3	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0111427_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-0111427_4	UniRef90	UniRef90_A0A3C1I732	Capsid protein	NA
UHGV-0111427_4	eggNOG-mapper	1399941.U3PCP8_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0111427_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0111427_4	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0111427_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0111427_5	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0111427_5	UniRef90	UniRef90_A0A3C1I7B3	Capsid protein	NA
UHGV-0111427_5	eggNOG-mapper	334390.LAF_0931	Phage minor capsid protein 2	NA
UHGV-0111427_5	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0111427_5	COG	COG2369	NA	NA
UHGV-0111427_5	Structural annotation	PF06152	NA	NA
UHGV-0111427_6	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0111427_6	UniRef90	UniRef90_A0A3C1I770	Scaffolding protein	NA
UHGV-0111427_6	eggNOG-mapper	272626.lin0108	Phage minor structural protein GP20	NA
UHGV-0111427_6	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0111427_6	Structural annotation	PF06810	NA	NA
UHGV-0111427_7	PHROG	phrog_422	major head protein	head and packaging
UHGV-0111427_7	UniRef90	UniRef90_A0A0R1U3D8	Major capsid family protein	NA
UHGV-0111427_7	eggNOG-mapper	768486.EHR_02620	NA	NA
UHGV-0111427_7	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0111427_8	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0111427_8	eggNOG-mapper	1140001.I571_02111	NA	NA
UHGV-0111427_9	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0111427_9	UniRef90	UniRef90_A0A3C1I949	Capsid protein	NA
UHGV-0111427_9	eggNOG-mapper	52979.O03932_9CAUD	Minor capsid protein	NA
UHGV-0111427_9	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0111427_9	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0111427_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0111427_10	UniRef90	UniRef90_A0A3C1I7R5	Capsid protein	NA
UHGV-0111427_10	eggNOG-mapper	52979.O03933_9CAUD	Minor capsid protein	NA
UHGV-0111427_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0111427_10	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0111427_11	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0111427_11	UniRef90	UniRef90_UPI001E54F846	minor capsid protein	NA
UHGV-0111427_11	eggNOG-mapper	762051.LKI_09705	Minor capsid protein from bacteriophage	NA
UHGV-0111427_11	Structural annotation	PF12691	NA	NA
UHGV-0111427_12	PHROG	phrog_820	major tail protein	tail
UHGV-0111427_12	UniRef90	UniRef90_A0A855ZMF8	Capsid protein	NA
UHGV-0111427_12	eggNOG-mapper	52979.O03972_9CAUD	NA	NA
UHGV-0111427_13	PHROG	phrog_10257	minor head protein	head and packaging
UHGV-0111427_13	Structural annotation	PF10666	NA	NA
UHGV-0111427_14	PHROG	phrog_706	NA	unknown function
UHGV-0111427_14	UniRef90	UniRef90_A0A0R1T0K3	Bacteriophage Gp15 protein	NA
UHGV-0111427_14	eggNOG-mapper	52979.O03936_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-0111427_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0111427_14	Structural annotation	PF06854	NA	NA
UHGV-0111427_15	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0111427_15	UniRef90	UniRef90_UPI000652843D	tape measure protein	NA
UHGV-0111427_15	eggNOG-mapper	438780.D2KRB7_9CAUD	peptidoglycan catabolic process	NA
UHGV-0111427_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0111427_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0111427_15	Structural annotation	PF20155, TIGR01760, NF012014, COG3941, COG3953	NA	NA
UHGV-0111427_16	PHROG	phrog_30835	NA	unknown function
UHGV-0111427_16	UniRef90	UniRef90_A0A3C1I780	Phage tail family protein	NA
UHGV-0111427_16	eggNOG-mapper	438780.D2KRB8_9CAUD	Phage tail protein	NA
UHGV-0111427_16	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0111427_16	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0111427_17	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-0111427_17	UniRef90	UniRef90_A0A3C1I741	Prophage_tail domain-containing protein	NA
UHGV-0111427_17	eggNOG-mapper	762051.LKI_09735	Prophage endopeptidase tail	NA
UHGV-0111427_17	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0111427_17	COG	COG4926	Phage-related protein	NA
UHGV-0111427_17	Structural annotation	PF06605, PF18994, MF_01370, TIGR01665, COG4926	NA	NA
UHGV-0111427_18	UniRef90	UniRef90_UPI00065283B7	pyocin knob domain-containing protein	NA
UHGV-0111427_18	eggNOG-mapper	944562.HMPREF9102_0424	NA	NA
UHGV-0111427_20	PHROG	phrog_6183	minor tail protein	tail
UHGV-0111427_20	UniRef90	UniRef90_A0A3C1I9X7	BppU_N domain-containing protein	NA
UHGV-0111427_20	eggNOG-mapper	1423814.HMPREF0549_1801	NA	NA
UHGV-0111427_20	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0111427_20	Structural annotation	PF10651, TIGR03503	NA	NA
UHGV-0111427_22	Structural annotation	PF08931	NA	NA
UHGV-0111427_23	Structural annotation	PF08931	NA	NA
UHGV-0111427_24	PHROG	phrog_1766	tail fiber protein	tail
UHGV-0111427_24	eggNOG-mapper	1423814.HMPREF0549_1803	NA	NA
UHGV-0111427_25	PHROG	phrog_32402	NA	unknown function
UHGV-0111427_25	UniRef90	UniRef90_A0A3C1I752	XkdX family protein	NA
UHGV-0111427_25	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0111427_26	PHROG	phrog_1009	NA	unknown function
UHGV-0111427_27	PHROG	phrog_2609	holin	lysis
UHGV-0111427_27	UniRef90	UniRef90_UPI000652734A	phage holin, LLH family	NA
UHGV-0111427_27	eggNOG-mapper	1423724.BAMM01000023_gene1895	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0111427_27	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0111427_27	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0111427_28	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0111427_28	PHROG	phrog_291	endolysin	lysis
UHGV-0111427_28	UniRef90	UniRef90_UPI0006527127	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0111427_28	eggNOG-mapper	349123.Lreu23DRAFT_3849	hydrolase, family 25	NA
UHGV-0111427_28	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0111427_28	Pfam	PF01476	LysM domain	LysM
UHGV-0111427_28	NCBIFam	TIGR02899.1	SafA/ExsA family spore coat assembly protein	NA
UHGV-0111427_28	COG	COG1388	LysM repeat	NA
UHGV-0111427_28	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0111427_29	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0111427_29	PHROG	phrog_95	integrase	integration and excision
UHGV-0111427_29	UniRef90	UniRef90_A0A3C1I702	Recombinase family protein	NA
UHGV-0111427_29	eggNOG-mapper	1158607.UAU_01706	Recombinase zinc beta ribbon domain	NA
UHGV-0111427_29	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0111427_29	Pfam	PF07508	Recombinase	Recombinase
UHGV-0111427_29	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0111427_29	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0111427_29	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0111427_30	PHROG	phrog_7823	NA	unknown function
UHGV-0111427_30	eggNOG-mapper	557436.Lreu_1147	NA	NA
UHGV-0111427_31	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0111427_31	UniRef90	UniRef90_UPI000A2DD9EE	Abi family protein	NA
UHGV-0111427_31	eggNOG-mapper	879308.HMPREF9130_0876	Abi-like protein	NA
UHGV-0111427_31	PADLOC	AbiD	AbiD	Abi
UHGV-0111427_31	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0111427_31	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0111427_31	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0111427_32	PHROG	phrog_33215	NA	unknown function
UHGV-0111427_32	eggNOG-mapper	575594.ACOH01000010_gene1682	NA	NA
UHGV-0111427_33	PHROG	phrog_28030	NA	unknown function
UHGV-0111427_33	eggNOG-mapper	908339.HMPREF9265_1431	nuclease	NA
UHGV-0111427_33	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0111427_33	Structural annotation	PF02805	NA	NA
UHGV-0111427_34	PHROG	phrog_10934	NA	unknown function
UHGV-0111427_34	UniRef90	UniRef90_UPI000F792B9F	SHOCT domain-containing protein	NA
UHGV-0111427_34	eggNOG-mapper	1545702.LACWKB8_0255	NA	NA
UHGV-0111427_36	PHROG	phrog_2039	NA	unknown function
UHGV-0111427_36	eggNOG-mapper	1423767.BALU01000011_gene280	NA	NA
UHGV-0111427_36	Structural annotation	PF05168, COG1895	NA	NA
UHGV-0111427_37	PHROG	phrog_13670	NA	unknown function
UHGV-0111427_38	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0111427_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0111427_38	UniRef90	UniRef90_A0A099YBU5	HTH cro/C1-type domain-containing protein	NA
UHGV-0111427_38	eggNOG-mapper	1035187.HMPREF9959_1405	sequence-specific DNA binding	NA
UHGV-0111427_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111427_38	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0111427_39	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0111427_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0111427_39	UniRef90	UniRef90_A0A3C1I9H1	XRE family transcriptional regulator	NA
UHGV-0111427_39	eggNOG-mapper	1235801.C822_00106	Helix-turn-helix XRE-family like proteins	NA
UHGV-0111427_39	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0111427_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111427_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111427_40	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0111427_40	UniRef90	UniRef90_UPI001E5750BA	Rha family transcriptional regulator	NA
UHGV-0111427_40	eggNOG-mapper	334390.LAF_0661	Phage regulatory protein	NA
UHGV-0111427_40	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0111427_40	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0111427_40	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0111427_40	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0111427_41	PHROG	phrog_12550	NA	unknown function
UHGV-0111427_41	eggNOG-mapper	1605.Lani381_0834	NA	NA
UHGV-0111427_49	PHROG	phrog_17280	NA	unknown function
UHGV-0111427_49	eggNOG-mapper	1605.Lani381_0408	NA	NA
UHGV-0111427_50	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0111427_50	UniRef90	UniRef90_UPI00053C5691	host-nuclease inhibitor Gam family protein	NA
UHGV-0111427_50	eggNOG-mapper	1203076.CAKF01000007_gene284	Bacteriophage Mu Gam like protein	NA
UHGV-0111427_50	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0111427_50	Structural annotation	PF07352	NA	NA
UHGV-0111427_51	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0111427_51	UniRef90	UniRef90_A0A1G9YTE8	Phage nucleotide-binding protein	NA
UHGV-0111427_51	eggNOG-mapper	387344.LVIS_1132	AAA domain	NA
UHGV-0111427_51	Pfam	PF13479	AAA domain	AAA_24
UHGV-0111427_51	NCBIFam	TIGR01618.1	phage nucleotide-binding protein	NA
UHGV-0111427_51	Structural annotation	PF13479, MF_00350, TIGR01618, COG1066	NA	NA
UHGV-0111427_52	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0111427_52	UniRef90	UniRef90_UPI0006527C0A	NA	NA
UHGV-0111427_52	eggNOG-mapper	1400520.LFAB_15830	NA	NA
UHGV-0111427_52	Pfam	PF05037	NA	DUF669
UHGV-0111427_52	Structural annotation	PF05037, NF005241, COG0629	NA	NA
UHGV-0111427_53	PHROG	phrog_6493	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0111427_53	UniRef90	UniRef90_UPI000B1496CE	replication-relaxation family protein	NA
UHGV-0111427_53	eggNOG-mapper	1423807.BACO01000085_gene2475	DnaD domain protein	NA
UHGV-0111427_53	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0111427_54	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0111427_54	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0111427_54	UniRef90	UniRef90_A0A508YSE2	AAA domain-containing protein	NA
UHGV-0111427_54	eggNOG-mapper	1423816.BACQ01000027_gene964	IstB-like ATP binding protein	NA
UHGV-0111427_54	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0111427_54	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0111427_54	Structural annotation	PF01695, MF_01509, NF005304, COG1484	NA	NA
UHGV-0111427_55	Structural annotation	PF00684	NA	NA
UHGV-0111427_58	Structural annotation	TIGR01453	NA	NA
UHGV-0111427_59	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0111427_59	eggNOG-mapper	944562.HMPREF9102_0402	NA	NA
UHGV-0111427_59	Structural annotation	PF07374, TIGR01637	NA	NA