UHGV-0111429

Genome information

Genome length 37,554 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9711

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111429
vOTU ID	vOTU-066640
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253480
BioSample	SAMEA3708856
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	30
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9711
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.15
Jumbo phage	No

Genome content
Genome length	37,554 bps
GC content	34.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.44%
Average CDS length	629.07 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111429_1	eggNOG-mapper	324831.LGAS_1123	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation dephosphorylation	NA
UHGV-0111429_1	COG	COG1806	Regulator of PEP synthase PpsR, kinase-PPPase family (combines ADP:protein kinase and phosphorylase activities)	NA
UHGV-0111429_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0111429_2	PHROG	phrog_291	endolysin	lysis
UHGV-0111429_2	UniRef90	UniRef90_A0A8A4V5U3	SH3 domain-containing protein	NA
UHGV-0111429_2	eggNOG-mapper	1416334.X2CXX8_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0111429_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0111429_2	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0111429_2	Structural annotation	PF01183, PF08460, MF_00496, NF033202, NF009621, COG3757	NA	NA
UHGV-0111429_3	PHROG	phrog_10813	holin	lysis
UHGV-0111429_3	UniRef90	UniRef90_UPI00118457A1	phage holin	NA
UHGV-0111429_3	eggNOG-mapper	257314.LJ_1419	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0111429_3	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0111429_3	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0111429_3	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0111429_4	PHROG	phrog_774	NA	unknown function
UHGV-0111429_4	UniRef90	UniRef90_UPI00118255BB	NA	NA
UHGV-0111429_4	eggNOG-mapper	891391.LAC30SC_06460	NA	NA
UHGV-0111429_4	Structural annotation	PF16789	NA	NA
UHGV-0111429_6	PHROG	phrog_4325	holin	lysis
UHGV-0111429_6	UniRef90	UniRef90_F0TFC4	NA	NA
UHGV-0111429_6	eggNOG-mapper	257314.LJ_1422	NA	NA
UHGV-0111429_6	Structural annotation	PF14248, COG2259	NA	NA
UHGV-0111429_7	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0111429_7	PHROG	phrog_7918	neck passage structure protein	connector
UHGV-0111429_7	UniRef90	UniRef90_A0A1X0V9A2	SGNH_hydro domain-containing protein	NA
UHGV-0111429_7	eggNOG-mapper	257314.LJ_1423	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0111429_7	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0111429_7	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0111429_7	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0111429_8	PHROG	phrog_37807	NA	unknown function
UHGV-0111429_8	eggNOG-mapper	257314.LJ_1424	NA	NA
UHGV-0111429_9	PHROG	phrog_3558	tail protein	tail
UHGV-0111429_9	UniRef90	UniRef90_UPI001E4373C9	phage tail protein	NA
UHGV-0111429_9	eggNOG-mapper	257314.LJ_1425	Prophage endopeptidase tail	NA
UHGV-0111429_9	COG	COG3953	SLT domain protein	NA
UHGV-0111429_10	PHROG	phrog_3558	tail protein	tail
UHGV-0111429_10	UniRef90	UniRef90_A0A137PLU1	Peptidase M23	NA
UHGV-0111429_10	eggNOG-mapper	257314.LJ_1425	Prophage endopeptidase tail	NA
UHGV-0111429_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0111429_10	COG	COG3953	SLT domain protein	NA
UHGV-0111429_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0111429_11	UniRef90	UniRef90_A0A256SIK9	Phage tail protein	NA
UHGV-0111429_11	eggNOG-mapper	257314.LJ_1425c	phage tail	NA
UHGV-0111429_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0111429_11	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0111429_12	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0111429_12	UniRef90	UniRef90_A0A4Z0GEY4	Phage tail tape measure protein	NA
UHGV-0111429_12	eggNOG-mapper	891391.LAC30SC_06495	Phage tail tape measure protein	NA
UHGV-0111429_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0111429_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0111429_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0111429_12	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0111429_13	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0111429_13	UniRef90	UniRef90_Q037E6	NA	NA
UHGV-0111429_13	eggNOG-mapper	543734.LCABL_13390	NA	NA
UHGV-0111429_14	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0111429_14	UniRef90	UniRef90_A0A179YBW8	NA	NA
UHGV-0111429_14	eggNOG-mapper	891391.LAC30SC_06505	Phage tail assembly chaperone protein, TAC	NA
UHGV-0111429_14	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0111429_14	Structural annotation	PF12363	NA	NA
UHGV-0111429_15	PHROG	phrog_238	major tail protein	tail
UHGV-0111429_15	UniRef90	UniRef90_UPI000B981332	phage major tail protein, TP901-1 family	NA
UHGV-0111429_15	eggNOG-mapper	891391.LAC30SC_06510	Phage tail tube protein	NA
UHGV-0111429_15	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0111429_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0111429_16	PHROG	phrog_176	tail terminator	connector
UHGV-0111429_16	UniRef90	UniRef90_F0TFD3	Phage-related major structural protein	NA
UHGV-0111429_16	eggNOG-mapper	891391.LAC30SC_06515	NA	NA
UHGV-0111429_16	Structural annotation	PF11367	NA	NA
UHGV-0111429_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0111429_17	UniRef90	UniRef90_E7FP97	Phage protein, HK97 gp10 family	NA
UHGV-0111429_17	eggNOG-mapper	891391.LAC30SC_06520	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0111429_17	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0111429_17	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0111429_18	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0111429_18	eggNOG-mapper	891391.LAC30SC_06525	NA	NA
UHGV-0111429_18	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0111429_19	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0111429_19	UniRef90	UniRef90_UPI0018AC6E76	phage head-tail connector protein	NA
UHGV-0111429_19	eggNOG-mapper	891391.LAC30SC_06530	Phage gp6-like head-tail connector protein	NA
UHGV-0111429_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0111429_19	Structural annotation	PF05135	NA	NA
UHGV-0111429_20	PHROG	phrog_544	major head protein	head and packaging
UHGV-0111429_20	UniRef90	UniRef90_A0A0F4LGI6	NA	NA
UHGV-0111429_20	eggNOG-mapper	1567453.A0A0A1ELG8_9CAUD	NA	NA
UHGV-0111429_20	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0111429_21	PHROG	phrog_2932	head scaffolding protein	head and packaging
UHGV-0111429_21	UniRef90	UniRef90_UPI0011090D4F	NA	NA
UHGV-0111429_21	eggNOG-mapper	1567453.A0A0A1EN85_9CAUD	aminoacyl-tRNA ligase activity	NA
UHGV-0111429_21	Pfam	PF14265	NA	DUF4355
UHGV-0111429_21	Structural annotation	PF14265	NA	NA
UHGV-0111429_24	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0111429_24	UniRef90	UniRef90_UPI0018AC07CC	toxin glutamine deamidase domain-containing protein	NA
UHGV-0111429_24	eggNOG-mapper	891391.LAC30SC_06550	Phage Mu protein F like protein	NA
UHGV-0111429_24	COG	COG2369	NA	NA
UHGV-0111429_24	Structural annotation	PF03496, PF04233, MF_04141, NF041404, TIGR01641, COG2369	NA	NA
UHGV-0111429_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0111429_25	UniRef90	UniRef90_A0A6M3BEX2	SPP1 family portal protein	NA
UHGV-0111429_25	eggNOG-mapper	257314.LJ_1438	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0111429_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0111429_25	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0111429_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0111429_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0111429_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0111429_26	UniRef90	UniRef90_A0A256M889	Terminase	NA
UHGV-0111429_26	eggNOG-mapper	908339.HMPREF9265_1614	Terminase-like family	NA
UHGV-0111429_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0111429_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0111429_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111429_26	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0111429_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0111429_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0111429_27	UniRef90	UniRef90_UPI00019C753D	terminase small subunit	NA
UHGV-0111429_27	eggNOG-mapper	326425.lhe_1216	Terminase small subunit	NA
UHGV-0111429_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0111429_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0111429_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0111429_28	PHROG	phrog_13702	terminase large subunit	head and packaging
UHGV-0111429_28	UniRef90	UniRef90_Q9AZ93	Orf221	NA
UHGV-0111429_28	eggNOG-mapper	324831.LGAS_0602	NA	NA
UHGV-0111429_29	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0111429_29	UniRef90	UniRef90_A0A8A8VL67	NA	NA
UHGV-0111429_29	eggNOG-mapper	324831.LGAS_0601	NA	NA
UHGV-0111429_29	Pfam	PF13643	NA	DUF4145
UHGV-0111429_29	COG	COG1413	HEAT repeat	NA
UHGV-0111429_29	Structural annotation	PF13643, COG2445	NA	NA
UHGV-0111429_30	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0111429_30	UniRef90	UniRef90_A0A0R2D2J7	NA	NA
UHGV-0111429_30	eggNOG-mapper	257314.LJ_1443	Phage transcriptional regulator, ArpU family	NA
UHGV-0111429_30	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0111429_30	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0111429_31	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0111429_31	UniRef90	UniRef90_A0A256M8P9	VRR-NUC domain-containing protein	NA
UHGV-0111429_31	eggNOG-mapper	326425.lhe_1219	VRR_NUC	NA
UHGV-0111429_31	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0111429_31	Structural annotation	PF03838, MF_04160, NF002583	NA	NA
UHGV-0111429_32	PHROG	phrog_4188	NA	unknown function
UHGV-0111429_35	PHROG	phrog_22711	NA	unknown function
UHGV-0111429_37	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0111429_37	UniRef90	UniRef90_UPI0007EFF8F9	virulence-associated E family protein	NA
UHGV-0111429_37	eggNOG-mapper	97137.C821_00665	Virulence-associated protein E	NA
UHGV-0111429_37	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0111429_37	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0111429_37	Structural annotation	PF05272, MF_04000, NF011296, COG5545	NA	NA
UHGV-0111429_38	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0111429_38	UniRef90	UniRef90_UPI0007F0150D	bifunctional DNA primase/polymerase	NA
UHGV-0111429_38	eggNOG-mapper	97137.C821_00664	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-0111429_38	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0111429_38	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0111429_38	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0111429_38	Structural annotation	PF09250, PF08708, NF040561, COG4983	NA	NA
UHGV-0111429_39	eggNOG-mapper	97137.C821_00663	NA	NA
UHGV-0111429_41	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0111429_41	UniRef90	UniRef90_A0A4Z0GFT7	Single-stranded DNA-binding protein	NA
UHGV-0111429_41	eggNOG-mapper	97137.C821_00662	NA	NA
UHGV-0111429_41	Structural annotation	PF05037	NA	NA
UHGV-0111429_42	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0111429_42	UniRef90	UniRef90_UPI00019C7532	AAA family ATPase	NA
UHGV-0111429_42	eggNOG-mapper	326425.lhe_1229	AAA domain	NA
UHGV-0111429_42	Pfam	PF13479	AAA domain	AAA_24
UHGV-0111429_42	COG	COG2887	RecB family exonuclease	NA
UHGV-0111429_42	Structural annotation	PF13479, MF_00348, TIGR01618, COG0468	NA	NA
UHGV-0111429_43	PHROG	phrog_26938	NA	unknown function
UHGV-0111429_43	UniRef90	UniRef90_UPI000317B126	sporulation protein Cse60	NA
UHGV-0111429_44	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0111429_44	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0111429_44	UniRef90	UniRef90_UPI0018A8CA90	DEAD/DEAH box helicase	NA
UHGV-0111429_44	eggNOG-mapper	97137.C821_00658	Helicase C-terminal domain protein	NA
UHGV-0111429_44	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0111429_44	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0111429_44	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0111429_44	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0111429_44	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0111429_45	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0111429_45	UniRef90	UniRef90_UPI0016663B43	siphovirus Gp157 family protein	NA
UHGV-0111429_45	eggNOG-mapper	326425.lhe_1234	Siphovirus Gp157	NA
UHGV-0111429_45	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0111429_45	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0111429_46	PHROG	phrog_14447	NA	unknown function
UHGV-0111429_46	eggNOG-mapper	139872.Q6SEF1_9CAUD	NA	NA
UHGV-0111429_47	UniRef90	UniRef90_UPI0002E7EE48	helix-turn-helix domain-containing protein	NA
UHGV-0111429_47	eggNOG-mapper	257314.LJ_1452b	NA	NA
UHGV-0111429_47	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0111429_48	UniRef90	UniRef90_UPI00019C7529	helix-turn-helix transcriptional regulator	NA
UHGV-0111429_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111429_48	Structural annotation	PF12844, TIGR03070, COG1476	NA	NA
UHGV-0111429_49	PHROG	phrog_8600	NA	unknown function
UHGV-0111429_49	UniRef90	UniRef90_UPI000BA4C5ED	YozE family protein	NA
UHGV-0111429_49	Pfam	PF06855	YozE SAM-like fold	YozE_SAM_like
UHGV-0111429_49	Structural annotation	PF06855, MF_01538, NF010193, COG4479	NA	NA
UHGV-0111429_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0111429_51	UniRef90	UniRef90_D0R3L6	Phage transcriptional regulator, Cro/CI family	NA
UHGV-0111429_51	eggNOG-mapper	326425.lhe_1238	Helix-turn-helix XRE-family like proteins	NA
UHGV-0111429_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111429_51	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0111429_52	PHROG	phrog_87	metallo-protease	other
UHGV-0111429_52	UniRef90	UniRef90_A0A5N1IBL6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0111429_52	eggNOG-mapper	257314.LJ_1458	Zn peptidase	NA
UHGV-0111429_52	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0111429_52	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0111429_53	UniRef90	UniRef90_UPI001E484DC4	ECF transporter S component	NA
UHGV-0111429_53	eggNOG-mapper	911104.AEKT01000044_gene1032	NA	NA
UHGV-0111429_55	KOfam	K14059	int; integrase	NA
UHGV-0111429_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0111429_55	UniRef90	UniRef90_A0A8G0AIR3	Site-specific integrase	NA
UHGV-0111429_55	eggNOG-mapper	257314.LJ_0288	Belongs to the 'phage' integrase family	NA
UHGV-0111429_55	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0111429_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0111429_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0111429_55	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA