UHGV-0111483

Genome information

Genome length 23,993 bps

CDS count 35

Completeness 50.17% (medium-quality)

geNomad score 0.9592

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111483
vOTU ID	vOTU-023559
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_246263
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9592
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.9
Jumbo phage	No

Genome content
Genome length	23,993 bps
GC content	43.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	90.51%
Average CDS length	623.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111483_1	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0111483_1	PHROG	phrog_10285	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0111483_1	UniRef90	UniRef90_UPI001D00EDA7	DNA polymerase	NA
UHGV-0111483_1	eggNOG-mapper	411473.RUMCAL_00904	NA	NA
UHGV-0111483_1	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0111483_1	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0111483_1	Structural annotation	PF00476, NF011540	NA	NA
UHGV-0111483_2	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0111483_2	UniRef90	UniRef90_UPI001D02DDEE	NA	NA
UHGV-0111483_2	eggNOG-mapper	641112.ACOK01000108_gene1777	NA	NA
UHGV-0111483_2	Pfam	PF14359	NA	DUF4406
UHGV-0111483_2	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0111483_3	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0111483_3	PHROG	phrog_1883	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0111483_3	UniRef90	UniRef90_U2KDX7	Phage/plasmid primase, P4 family domain protein	NA
UHGV-0111483_3	eggNOG-mapper	411473.RUMCAL_00901	Phage plasmid primase, P4 family	NA
UHGV-0111483_3	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0111483_3	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0111483_3	Pfam	PF19263	NA	DUF5906
UHGV-0111483_3	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0111483_3	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0111483_3	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0111483_3	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0111483_4	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111483_4	UniRef90	UniRef90_U2M4Q3	VRR-NUC domain protein	NA
UHGV-0111483_4	eggNOG-mapper	411473.RUMCAL_00899	VRR_NUC	NA
UHGV-0111483_4	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0111483_4	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0111483_5	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0111483_5	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0111483_5	UniRef90	UniRef90_A0A1C6CJM1	DNA methylase	NA
UHGV-0111483_5	eggNOG-mapper	411473.RUMCAL_00893	helicase	NA
UHGV-0111483_5	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0111483_5	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0111483_5	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0111483_5	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0111483_5	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0111483_6	PHROG	phrog_7024	NA	unknown function
UHGV-0111483_6	eggNOG-mapper	663278.Ethha_1824	NA	NA
UHGV-0111483_8	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0111483_8	Structural annotation	PF08281, MF_00674, MF_00683, NF007227, COG1595	NA	NA
UHGV-0111483_9	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0111483_9	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111483_9	UniRef90	UniRef90_A0A1C6CJN3	HNH endonuclease	NA
UHGV-0111483_9	eggNOG-mapper	1384066.JAGT01000001_gene953	HNH endonuclease	NA
UHGV-0111483_9	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0111483_9	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0111483_9	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0111483_10	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0111483_10	UniRef90	UniRef90_A0A374VMN9	Terminase	NA
UHGV-0111483_10	eggNOG-mapper	1235790.C805_01775	NA	NA
UHGV-0111483_10	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0111483_10	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0111483_11	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0111483_11	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0111483_11	UniRef90	UniRef90_A0A374VLA4	Methyltransferase	NA
UHGV-0111483_11	eggNOG-mapper	1410670.JHXF01000015_gene2279	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0111483_11	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0111483_11	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0111483_11	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0111483_11	COG	COG0863	DNA modification methylase	NA
UHGV-0111483_11	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0111483_12	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0111483_12	PHROG	phrog_38038	NA	unknown function
UHGV-0111483_12	UniRef90	UniRef90_UPI001D0042FD	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0111483_12	eggNOG-mapper	411490.ANACAC_00745	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0111483_12	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0111483_12	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0111483_12	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0111483_12	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0111483_12	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0111483_13	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0111483_13	UniRef90	UniRef90_A0A374VL88	Virulence protein	NA
UHGV-0111483_13	eggNOG-mapper	411473.RUMCAL_02011	NA	NA
UHGV-0111483_13	AcrCatalog	cluster_14489	NA	NA
UHGV-0111483_14	PHROG	phrog_3782	NA	unknown function
UHGV-0111483_14	UniRef90	UniRef90_UPI001D01E7D2	NA	NA
UHGV-0111483_14	eggNOG-mapper	411473.RUMCAL_02699	NA	NA
UHGV-0111483_14	Pfam	PF14192	NA	DUF4314
UHGV-0111483_14	Structural annotation	PF14192, MF_00754, NF007106	NA	NA
UHGV-0111483_15	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0111483_15	UniRef90	UniRef90_A0A1C5SI47	Putative amidoligase enzyme	NA
UHGV-0111483_15	eggNOG-mapper	1410670.JHXF01000015_gene2282	NA	NA
UHGV-0111483_15	AcrCatalog	cluster_16277	NA	NA
UHGV-0111483_15	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0111483_15	Structural annotation	PF12224	NA	NA
UHGV-0111483_16	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-0111483_16	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0111483_16	UniRef90	UniRef90_UPI001D0182E8	gamma-glutamylcyclotransferase	NA
UHGV-0111483_16	eggNOG-mapper	1410670.JHXF01000015_gene2284	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-0111483_16	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-0111483_16	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0111483_16	Structural annotation	PF06094, COG2105	NA	NA
UHGV-0111483_17	PHROG	phrog_2945	NA	unknown function
UHGV-0111483_17	eggNOG-mapper	1200567.JNKD01000011_gene666	NA	NA
UHGV-0111483_18	PHROG	phrog_3777	NA	unknown function
UHGV-0111483_18	UniRef90	UniRef90_UPI001D004CDA	NA	NA
UHGV-0111483_18	eggNOG-mapper	411473.RUMCAL_03423	NA	NA
UHGV-0111483_18	Pfam	PF12957	NA	DUF3846
UHGV-0111483_18	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0111483_18	Structural annotation	PF12957	NA	NA
UHGV-0111483_19	eggNOG-mapper	411473.RUMCAL_01614	NA	NA
UHGV-0111483_20	PHROG	phrog_4709	NA	unknown function
UHGV-0111483_20	eggNOG-mapper	411473.RUMCAL_00553	NA	NA
UHGV-0111483_20	AcrCatalog	cluster_3300	NA	NA
UHGV-0111483_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0111483_21	UniRef90	UniRef90_A0A1K1YL55	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0111483_21	eggNOG-mapper	1384066.JAGT01000001_gene941	large subunit	NA
UHGV-0111483_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0111483_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0111483_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0111483_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0111483_22	eggNOG-mapper	1234679.BN424_1249	NA	NA
UHGV-0111483_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0111483_23	UniRef90	UniRef90_U2M1G3	Phage portal protein, HK97 family	NA
UHGV-0111483_23	eggNOG-mapper	411473.RUMCAL_01625	Phage portal protein, HK97 family	NA
UHGV-0111483_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0111483_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0111483_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0111483_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0111483_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0111483_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0111483_24	UniRef90	UniRef90_A0A1C6CKN2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0111483_24	eggNOG-mapper	411473.RUMCAL_01624	Belongs to the peptidase S14 family	NA
UHGV-0111483_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0111483_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0111483_24	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0111483_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0111483_25	UniRef90	UniRef90_U2KTH2	Phage major capsid protein, HK97 family	NA
UHGV-0111483_25	eggNOG-mapper	411473.RUMCAL_01623	Phage major capsid protein, HK97 family	NA
UHGV-0111483_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0111483_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0111483_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0111483_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0111483_26	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0111483_26	UniRef90	UniRef90_U2K771	Phage DNA packaging protein	NA
UHGV-0111483_26	eggNOG-mapper	411473.RUMCAL_03192	Phage DNA packaging protein	NA
UHGV-0111483_26	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0111483_26	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0111483_26	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0111483_27	PHROG	phrog_25	head closure Hc1	connector
UHGV-0111483_27	UniRef90	UniRef90_A0A1C6CLJ6	Bacteriophage head-tail adaptor	NA
UHGV-0111483_27	eggNOG-mapper	411473.RUMCAL_03191	Phage head-tail joining protein	NA
UHGV-0111483_27	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0111483_27	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0111483_27	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0111483_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0111483_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0111483_28	UniRef90	UniRef90_U2KW23	Phage protein, HK97 gp10 family	NA
UHGV-0111483_28	eggNOG-mapper	411473.RUMCAL_01154	NA	NA
UHGV-0111483_28	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0111483_28	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0111483_29	PHROG	phrog_78	tail terminator	connector
UHGV-0111483_29	UniRef90	UniRef90_A0A2X2WS24	Phage-like protein	NA
UHGV-0111483_29	eggNOG-mapper	411473.RUMCAL_03189	NA	NA
UHGV-0111483_29	Structural annotation	PF20765	NA	NA
UHGV-0111483_30	PHROG	phrog_88	major tail protein	tail
UHGV-0111483_30	UniRef90	UniRef90_U2LLX5	Phage major tail protein, phi13 family	NA
UHGV-0111483_30	eggNOG-mapper	411473.RUMCAL_03188	phage major tail protein, phi13 family	NA
UHGV-0111483_30	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0111483_30	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0111483_31	PHROG	phrog_709	NA	unknown function
UHGV-0111483_31	eggNOG-mapper	411473.RUMCAL_03187	NA	NA
UHGV-0111483_31	Structural annotation	PF11836	NA	NA
UHGV-0111483_32	PHROG	phrog_3033	NA	unknown function
UHGV-0111483_32	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0111483_32	eggNOG-mapper	411473.RUMCAL_03186	NA	NA
UHGV-0111483_33	KOfam	K07341	doc; death on curing protein	NA
UHGV-0111483_33	PHROG	phrog_577	Doc-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0111483_33	UniRef90	UniRef90_U2JWE6	Death-on-curing family protein	NA
UHGV-0111483_33	eggNOG-mapper	411473.RUMCAL_02818	Fic/DOC family	NA
UHGV-0111483_33	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0111483_33	NCBIFam	TIGR01550.1	type II toxin-antitoxin system death-on-curing family toxin	NA
UHGV-0111483_33	COG	COG3654	Prophage maintenance system killer protein	NA
UHGV-0111483_33	Structural annotation	PF02661, TIGR01550, COG3654	NA	NA
UHGV-0111483_34	PHROG	phrog_2194	NA	unknown function
UHGV-0111483_34	UniRef90	UniRef90_U2KEC4	Prevent-host-death family protein	NA
UHGV-0111483_34	eggNOG-mapper	411473.RUMCAL_02819	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-0111483_34	Structural annotation	PF02604, TIGR01552, COG2161	NA	NA
UHGV-0111483_35	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0111483_35	UniRef90	UniRef90_A0A174H845	Phage-related minor tail protein	NA
UHGV-0111483_35	eggNOG-mapper	1341157.RF007C_02595	Phage tail tape measure protein, TP901 family	NA
UHGV-0111483_35	COG	COG5280	Phage-related minor tail protein	NA