UHGV-0111524

Genome information

Genome length 57,113 bps

CDS count 100

Completeness 100.00% (complete)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111524
vOTU ID	vOTU-045651
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_245643
BioSample	SAMEA3708822
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.44
Jumbo phage	No

Genome content
Genome length	57,113 bps
GC content	49.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	100
CDS density	86.34%
Average CDS length	495.54 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111524_2	PHROG	phrog_15303	NA	unknown function
UHGV-0111524_3	PHROG	phrog_1863	NA	unknown function
UHGV-0111524_3	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0111524_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0111524_4	PHROG	phrog_291	endolysin	lysis
UHGV-0111524_4	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0111524_4	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0111524_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0111524_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0111524_4	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0111524_5	PHROG	phrog_28526	NA	unknown function
UHGV-0111524_5	UniRef90	UniRef90_A0A415D4T1	NA	NA
UHGV-0111524_5	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-0111524_5	Pfam	PF04255	NA	DUF433
UHGV-0111524_7	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0111524_7	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0111524_7	UniRef90	UniRef90_UPI0018CC41A4	reverse transcriptase domain-containing protein	NA
UHGV-0111524_7	eggNOG-mapper	1235802.C823_01102	Reverse transcriptase	NA
UHGV-0111524_7	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0111524_7	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0111524_7	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0111524_7	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0111524_8	eggNOG-mapper	1235802.C823_01101	NA	NA
UHGV-0111524_8	Structural annotation	PF05635, NF008912	NA	NA
UHGV-0111524_9	UniRef90	UniRef90_A0A1G6NQ88	NA	NA
UHGV-0111524_9	eggNOG-mapper	1235802.C823_01049	NA	NA
UHGV-0111524_9	Structural annotation	PF19789	NA	NA
UHGV-0111524_11	PHROG	phrog_18725	NA	unknown function
UHGV-0111524_11	UniRef90	UniRef90_UPI001D0EF571	Ig-like domain-containing protein	NA
UHGV-0111524_11	eggNOG-mapper	718252.FP2_14370	domain, Protein	NA
UHGV-0111524_11	COG	COG5492	NA	NA
UHGV-0111524_11	Structural annotation	PF15417, NF041539	NA	NA
UHGV-0111524_12	PHROG	phrog_13879	NA	unknown function
UHGV-0111524_12	eggNOG-mapper	1007103.AFHW01000096_gene3259	NA	NA
UHGV-0111524_12	Pfam	PF19789	NA	DUF6273
UHGV-0111524_12	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0111524_13	PHROG	phrog_1194	NA	unknown function
UHGV-0111524_13	Pfam	PF20458	NA	DUF6711
UHGV-0111524_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0111524_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0111524_14	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0111524_14	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0111524_15	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0111524_16	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0111524_16	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0111524_16	Pfam	PF16478	NA	DUF5055
UHGV-0111524_16	Structural annotation	PF16478	NA	NA
UHGV-0111524_17	PHROG	phrog_158	major tail protein	tail
UHGV-0111524_17	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0111524_17	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0111524_17	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0111524_18	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0111524_20	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0111524_21	UniRef90	UniRef90_A0A7C7ERG0	DNA-packaging protein	NA
UHGV-0111524_21	Structural annotation	PF05135	NA	NA
UHGV-0111524_22	PHROG	phrog_29	major head protein	head and packaging
UHGV-0111524_22	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0111524_22	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-0111524_22	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0111524_22	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0111524_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0111524_25	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0111524_25	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0111524_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0111524_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0111524_27	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0111524_27	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0111524_27	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0111524_27	COG	COG5410	NA	NA
UHGV-0111524_27	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0111524_28	Structural annotation	PF09202, MF_01177, TIGR02702, COG1846	NA	NA
UHGV-0111524_30	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0111524_30	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0111524_30	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0111524_30	eggNOG-mapper	1410633.JHWR01000012_gene95	Resolvase, N terminal domain	NA
UHGV-0111524_30	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0111524_30	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0111524_30	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0111524_31	Structural annotation	PF20075	NA	NA
UHGV-0111524_32	PHROG	phrog_14275	NA	unknown function
UHGV-0111524_32	eggNOG-mapper	1280696.ATVY01000001_gene3550	NA	NA
UHGV-0111524_33	PHROG	phrog_14275	NA	unknown function
UHGV-0111524_33	UniRef90	UniRef90_UPI0008351D21	Ltp family lipoprotein	NA
UHGV-0111524_33	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0111524_33	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0111524_33	Structural annotation	PF03843, MF_00984, TIGR00752, COG3065	NA	NA
UHGV-0111524_36	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111524_36	eggNOG-mapper	88870.Q9ZX24_BPMT4	NA	NA
UHGV-0111524_37	Structural annotation	PF10735, COG4483	NA	NA
UHGV-0111524_40	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0111524_40	UniRef90	UniRef90_A0A1Y3SW45	RepA_N domain-containing protein (Fragment)	NA
UHGV-0111524_40	eggNOG-mapper	411468.CLOSCI_02792	Replication initiator protein A (RepA) N-terminus	NA
UHGV-0111524_40	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0111524_40	COG	COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	NA
UHGV-0111524_40	Structural annotation	PF06970, MF_01177, NF040642, COG5625	NA	NA
UHGV-0111524_41	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0111524_41	Structural annotation	PF17516, NF007197	NA	NA
UHGV-0111524_43	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0111524_43	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0111524_43	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0111524_43	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0111524_43	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0111524_43	COG	COG0305	Replicative DNA helicase	NA
UHGV-0111524_43	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0111524_44	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0111524_44	Pfam	PF19808	NA	DUF6291
UHGV-0111524_44	Structural annotation	PF19808	NA	NA
UHGV-0111524_45	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0111524_45	Structural annotation	PF14354	NA	NA
UHGV-0111524_48	Structural annotation	NF041588	NA	NA
UHGV-0111524_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0111524_51	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0111524_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111524_51	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0111524_51	Structural annotation	PF01381, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0111524_55	PHROG	phrog_14697	NA	unknown function
UHGV-0111524_55	UniRef90	UniRef90_A0A2I7REB9	Coil containing protein	NA
UHGV-0111524_55	eggNOG-mapper	742740.HMPREF9474_02291	phosphatase activity	NA
UHGV-0111524_55	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-0111524_56	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0111524_56	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-0111524_56	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0111524_56	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0111524_58	Structural annotation	PF16677	NA	NA
UHGV-0111524_59	PHROG	phrog_7704	NA	unknown function
UHGV-0111524_59	UniRef90	UniRef90_A0A2V2F8Z8	NA	NA
UHGV-0111524_59	Pfam	PF04448	NA	DUF551
UHGV-0111524_59	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0111524_61	Structural annotation	MF_00085, TIGR00037, COG0231	NA	NA
UHGV-0111524_64	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0111524_66	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0111524_66	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0111524_66	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0111524_66	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0111524_67	PHROG	phrog_3136	NA	unknown function
UHGV-0111524_67	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0111524_67	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0111524_67	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0111524_67	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0111524_68	PHROG	phrog_35094	NA	unknown function
UHGV-0111524_68	eggNOG-mapper	457424.BFAG_02409	NA	NA
UHGV-0111524_70	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0111524_70	UniRef90	UniRef90_A0A2J4JSJ8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0111524_70	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0111524_70	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0111524_70	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0111524_70	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0111524_71	PHROG	phrog_18107	NA	unknown function
UHGV-0111524_71	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0111524_71	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0111524_71	Structural annotation	PF05037	NA	NA
UHGV-0111524_72	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0111524_72	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0111524_72	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0111524_72	Pfam	PF13479	AAA domain	AAA_24
UHGV-0111524_72	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0111524_74	eggNOG-mapper	1131553.JIBI01000011_gene721	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0111524_74	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0111524_74	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0111524_74	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0111524_75	Structural annotation	PF14143	NA	NA
UHGV-0111524_77	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0111524_77	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0111524_78	Structural annotation	TIGR03826	NA	NA
UHGV-0111524_80	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0111524_80	UniRef90	UniRef90_UPI001D011E8C	XRE family transcriptional regulator	NA
UHGV-0111524_80	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0111524_80	Structural annotation	TIGR03070	NA	NA
UHGV-0111524_81	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0111524_81	UniRef90	UniRef90_A0A1C6D4U5	Helix-turn-helix domain	NA
UHGV-0111524_81	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0111524_81	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0111524_81	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0111524_81	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0111524_85	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0111524_85	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111524_85	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111524_85	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0111524_86	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0111524_86	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0111524_86	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0111524_86	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0111524_86	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0111524_86	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0111524_86	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0111524_88	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0111524_88	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0111524_88	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0111524_88	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0111524_88	Pfam	PF13614	AAA domain	AAA_31
UHGV-0111524_88	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0111524_88	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0111524_90	Structural annotation	PF07878	NA	NA
UHGV-0111524_91	Pfam	PF04448	NA	DUF551
UHGV-0111524_93	PHROG	phrog_7070	NA	unknown function
UHGV-0111524_93	eggNOG-mapper	1195072.M4HPW0_9CAUD	NA	NA
UHGV-0111524_94	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0111524_95	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0111524_96	PHROG	phrog_16490	NA	unknown function
UHGV-0111524_96	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0111524_99	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111524_99	Structural annotation	PF01381, TIGR03070, COG1396	NA	NA