UHGV-0111561

Genome information

Genome length 34,649 bps

CDS count 48

Completeness 93.22% (high-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111561
vOTU ID	vOTU-012653
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_258351
BioSample	SAMEA3708825
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.11
Jumbo phage	No

Genome content
Genome length	34,649 bps
GC content	50.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.13%
Average CDS length	668.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111561_1	Structural annotation	PF08948, MF_01537, COG3123	NA	NA
UHGV-0111561_2	PHROG	phrog_6616	tail protein	tail
UHGV-0111561_2	eggNOG-mapper	1262449.CP6013_3213	Phage minor structural protein	NA
UHGV-0111561_2	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0111561_2	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0111561_3	PHROG	phrog_1194	NA	unknown function
UHGV-0111561_3	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0111561_4	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0111561_4	UniRef90	UniRef90_A0A3D4L3B5	PhageMin_Tail domain-containing protein (Fragment)	NA
UHGV-0111561_4	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0111561_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0111561_4	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0111561_4	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0111561_5	PHROG	phrog_706	NA	unknown function
UHGV-0111561_5	UniRef90	UniRef90_A0A173Y9S4	Bacteriophage Gp15 protein	NA
UHGV-0111561_5	eggNOG-mapper	645991.Sgly_0348	Bacteriophage Gp15 protein	NA
UHGV-0111561_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0111561_5	Structural annotation	PF06854	NA	NA
UHGV-0111561_6	Structural annotation	PF20378	NA	NA
UHGV-0111561_8	PHROG	phrog_3099	NA	unknown function
UHGV-0111561_8	eggNOG-mapper	632245.CLP_1654	NA	NA
UHGV-0111561_8	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0111561_9	PHROG	phrog_3266	tail completion	connector
UHGV-0111561_9	eggNOG-mapper	999411.HMPREF1092_03317	NA	NA
UHGV-0111561_9	Structural annotation	PF12691	NA	NA
UHGV-0111561_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0111561_10	UniRef90	UniRef90_D4LDZ5	Minor capsid	NA
UHGV-0111561_10	eggNOG-mapper	645991.Sgly_0344	NA	NA
UHGV-0111561_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0111561_10	Structural annotation	PF11114	NA	NA
UHGV-0111561_11	PHROG	phrog_3366	NA	unknown function
UHGV-0111561_11	eggNOG-mapper	645991.Sgly_0343	NA	NA
UHGV-0111561_11	Pfam	PF20536	NA	DUF6751
UHGV-0111561_11	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0111561_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0111561_12	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-0111561_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-0111561_13	UniRef90	UniRef90_R5SNJ0	Lj928 prophage protein	NA
UHGV-0111561_13	eggNOG-mapper	1121335.Clst_0392	NA	NA
UHGV-0111561_13	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0111561_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0111561_14	UniRef90	UniRef90_UPI00117868A2	phage scaffolding protein	NA
UHGV-0111561_14	eggNOG-mapper	545697.HMPREF0216_02848	Phage minor structural protein GP20	NA
UHGV-0111561_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0111561_14	Structural annotation	PF06810	NA	NA
UHGV-0111561_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0111561_17	UniRef90	UniRef90_A0A1C6GGW2	Phage minor capsid protein 2	NA
UHGV-0111561_17	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0111561_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0111561_17	COG	COG2369	NA	NA
UHGV-0111561_17	Structural annotation	PF06152	NA	NA
UHGV-0111561_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-0111561_18	UniRef90	UniRef90_R5H044	Phage portal protein putative A118 family	NA
UHGV-0111561_18	eggNOG-mapper	883114.HMPREF9709_01198	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0111561_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0111561_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0111561_19	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0111561_19	UniRef90	UniRef90_A0A355JEL9	PBSX family phage terminase large subunit	NA
UHGV-0111561_19	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0111561_19	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0111561_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0111561_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111561_19	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0111561_20	eggNOG-mapper	1160721.RBI_II00544	NA	NA
UHGV-0111561_20	Structural annotation	PF07141	NA	NA
UHGV-0111561_21	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0111561_21	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0111561_21	UniRef90	UniRef90_A0A174ZTH1	Transcription termination factor nusG	NA
UHGV-0111561_21	eggNOG-mapper	485916.Dtox_4226	antitermination protein NusG	NA
UHGV-0111561_21	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0111561_21	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0111561_21	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0111561_22	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0111561_22	UniRef90	UniRef90_R5GR06	PF11985 family protein	NA
UHGV-0111561_22	eggNOG-mapper	1160721.RBI_II00546	NA	NA
UHGV-0111561_22	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0111561_22	Structural annotation	PF11985	NA	NA
UHGV-0111561_23	PHROG	phrog_25462	NA	unknown function
UHGV-0111561_23	UniRef90	UniRef90_A0A349GP70	Type VI secretion protein	NA
UHGV-0111561_23	eggNOG-mapper	663278.Ethha_0086	NA	NA
UHGV-0111561_23	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0111561_24	eggNOG-mapper	411473.RUMCAL_01917	NA	NA
UHGV-0111561_25	eggNOG-mapper	552398.HMPREF0866_03126	Mor transcription activator	NA
UHGV-0111561_25	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0111561_25	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-0111561_26	UniRef90	UniRef90_UPI000F51F9E5	regulatory protein GemA	NA
UHGV-0111561_26	eggNOG-mapper	1160721.RBI_II00550	NA	NA
UHGV-0111561_26	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0111561_26	Structural annotation	PF06252	NA	NA
UHGV-0111561_27	eggNOG-mapper	1160721.RBI_II00551	NA	NA
UHGV-0111561_28	UniRef90	UniRef90_R5GQZ8	Putative SpoVT / AbrB like domain protein	NA
UHGV-0111561_28	eggNOG-mapper	552398.HMPREF0866_03129	SpoVT / AbrB like domain	NA
UHGV-0111561_28	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0111561_28	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0111561_28	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0111561_29	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0111561_29	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0111561_29	UniRef90	UniRef90_R5H034	AAA domain-containing protein	NA
UHGV-0111561_29	eggNOG-mapper	796942.HMPREF9623_00441	NA	NA
UHGV-0111561_29	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0111561_29	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0111561_29	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0111561_29	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0111561_30	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0111561_30	eggNOG-mapper	1207076.ALAT01000105_gene1930	Bacteriophage replication protein O	NA
UHGV-0111561_31	PHROG	phrog_5671	NA	unknown function
UHGV-0111561_31	eggNOG-mapper	696281.Desru_1771	NA	NA
UHGV-0111561_32	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0111561_32	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0111561_32	UniRef90	UniRef90_A0A3D5B685	Hydrolase	NA
UHGV-0111561_32	eggNOG-mapper	718252.FP2_01870	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0111561_32	Pfam	PF01966	HD domain	HD
UHGV-0111561_32	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0111561_32	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0111561_34	PHROG	phrog_4292	NA	unknown function
UHGV-0111561_34	eggNOG-mapper	645991.Sgly_0752	NA	NA
UHGV-0111561_35	KOfam	K02450	gspA; general secretion pathway protein A	NA
UHGV-0111561_35	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0111561_35	UniRef90	UniRef90_A0A175A3H1	AAA domain-containing protein	NA
UHGV-0111561_35	eggNOG-mapper	1160721.RBI_II00554	AAA domain	NA
UHGV-0111561_35	Pfam	PF13401	AAA domain	AAA_22
UHGV-0111561_35	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0111561_35	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0111561_36	PHROG	phrog_310	transposase	integration and excision
UHGV-0111561_36	UniRef90	UniRef90_R5H7J6	Integrase core domain protein	NA
UHGV-0111561_36	eggNOG-mapper	1160721.RBI_II00555	Mu transposase, C-terminal	NA
UHGV-0111561_36	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0111561_36	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0111561_36	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0111561_36	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0111561_36	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0111561_41	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0111561_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0111561_41	UniRef90	UniRef90_UPI001A9C3CE7	helix-turn-helix transcriptional regulator	NA
UHGV-0111561_41	eggNOG-mapper	445974.CLORAM_00010	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0111561_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111561_41	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0111561_41	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0111561_42	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0111561_42	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0111561_42	UniRef90	UniRef90_UPI000F54BB0A	helix-turn-helix domain-containing protein	NA
UHGV-0111561_42	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-0111561_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111561_42	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0111561_42	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0111561_42	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0111561_44	eggNOG-mapper	397291.C804_03846	NA	NA
UHGV-0111561_48	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0111561_48	UniRef90	UniRef90_A0A1X9M8I1	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0111561_48	eggNOG-mapper	1034347.CAHJ01000081_gene1404	Resolvase, N terminal domain	NA
UHGV-0111561_48	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA