UHGV-0111587

Genome information

Genome length 41,119 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9704

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111587
vOTU ID	vOTU-001023
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_249244
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9704
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.81
Jumbo phage	No

Genome content
Genome length	41,119 bps
GC content	45.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	94.83%
Average CDS length	687.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111587_1	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0111587_1	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0111587_1	UniRef90	UniRef90_A0A845RJ44	DNA methyltransferase	NA
UHGV-0111587_1	eggNOG-mapper	665950.HMPREF1025_01456	MT-A70	NA
UHGV-0111587_1	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0111587_1	Pfam	PF05063	MT-A70	MT-A70
UHGV-0111587_1	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0111587_1	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0111587_2	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0111587_2	UniRef90	UniRef90_A0A516LQR9	Putative DNA (Cytosine-5)-methyltransferase	NA
UHGV-0111587_2	eggNOG-mapper	1327982.R9ZYM1_9CAUD	NA	NA
UHGV-0111587_2	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0111587_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0111587_3	UniRef90	UniRef90_A0A3B8SPQ2	RNA polymerase subunit sigma-70	NA
UHGV-0111587_3	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0111587_3	Structural annotation	PF07374	NA	NA
UHGV-0111587_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0111587_5	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0111587_5	UniRef90	UniRef90_A0A350H2H5	Terminase-like family protein	NA
UHGV-0111587_5	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0111587_5	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0111587_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111587_5	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0111587_6	PHROG	phrog_156	portal protein	head and packaging
UHGV-0111587_6	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0111587_6	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0111587_7	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0111587_7	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0111587_8	PHROG	phrog_13908	NA	unknown function
UHGV-0111587_8	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0111587_9	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0111587_9	UniRef90	UniRef90_UPI001EE371A8	N4-gp56 family major capsid protein	NA
UHGV-0111587_9	eggNOG-mapper	748224.HMPREF9436_01399	NA	NA
UHGV-0111587_9	Pfam	PF13252	NA	DUF4043
UHGV-0111587_9	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0111587_9	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0111587_11	PHROG	phrog_12105	NA	unknown function
UHGV-0111587_12	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0111587_12	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-0111587_12	Structural annotation	PF11134, NF038015, TIGR03721, COG3823	NA	NA
UHGV-0111587_14	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0111587_15	PHROG	phrog_22978	NA	unknown function
UHGV-0111587_15	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0111587_15	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0111587_17	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0111587_17	PHROG	phrog_894	endolysin	lysis
UHGV-0111587_17	UniRef90	UniRef90_B1C9L9	Putative peptidoglycan binding domain protein	NA
UHGV-0111587_17	eggNOG-mapper	445971.ANASTE_02319	Peptidase M15	NA
UHGV-0111587_17	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0111587_17	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0111587_17	COG	COG3108	NA	NA
UHGV-0111587_18	UniRef90	UniRef90_UPI001F485105	branched-chain amino acid ABC transporter permease	NA
UHGV-0111587_18	eggNOG-mapper	1232453.BAIF02000013_gene3226	NA	NA
UHGV-0111587_19	PHROG	phrog_297	holin	lysis
UHGV-0111587_19	UniRef90	UniRef90_UPI00190C0C32	phage holin	NA
UHGV-0111587_19	eggNOG-mapper	1227360.C176_11509	Bacteriophage holin	NA
UHGV-0111587_19	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0111587_19	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0111587_19	COG	COG5546	NA	NA
UHGV-0111587_19	Structural annotation	COG5546	NA	NA
UHGV-0111587_20	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0111587_20	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0111587_20	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0111587_24	KOfam	K14059	int; integrase	NA
UHGV-0111587_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0111587_24	UniRef90	UniRef90_UPI0005D1DBC9	site-specific integrase	NA
UHGV-0111587_24	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0111587_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0111587_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0111587_24	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0111587_26	UniRef90	UniRef90_A0A354UMM3	HTH cro/C1-type domain-containing protein	NA
UHGV-0111587_26	COG	COG1426	NA	NA
UHGV-0111587_26	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0111587_28	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0111587_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0111587_28	UniRef90	UniRef90_A0A373MWG9	XRE family transcriptional regulator	NA
UHGV-0111587_28	eggNOG-mapper	1536772.R70723_06535	addiction module antidote protein HigA	NA
UHGV-0111587_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111587_28	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0111587_28	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0111587_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0111587_34	UniRef90	UniRef90_A0A7X5D1X3	XRE family transcriptional regulator	NA
UHGV-0111587_34	eggNOG-mapper	97138.C820_00784	sequence-specific DNA binding	NA
UHGV-0111587_34	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0111587_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111587_34	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0111587_35	UniRef90	UniRef90_R5EZG5	DNA binding domain protein excisionase family	NA
UHGV-0111587_35	eggNOG-mapper	871968.DESME_09680	Helix-turn-helix domain	NA
UHGV-0111587_35	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0111587_35	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0111587_35	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0111587_38	PHROG	phrog_4433	NA	unknown function
UHGV-0111587_38	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0111587_38	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0111587_38	Structural annotation	NF007410	NA	NA
UHGV-0111587_40	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0111587_40	UniRef90	UniRef90_C7GC36	Siphovirus Gp157	NA
UHGV-0111587_40	eggNOG-mapper	315749.Bcer98_2962	Siphovirus Gp157	NA
UHGV-0111587_40	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0111587_40	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0111587_41	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111587_41	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0111587_41	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0111587_41	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0111587_42	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0111587_42	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0111587_42	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0111587_42	Structural annotation	PF05772	NA	NA
UHGV-0111587_44	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0111587_44	UniRef90	UniRef90_A0A315ZXT4	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0111587_44	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0111587_44	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0111587_44	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0111587_44	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0111587_46	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0111587_46	eggNOG-mapper	588581.Cpap_1498	COG NOG14118 non supervised orthologous group	NA
UHGV-0111587_46	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0111587_47	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0111587_47	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0111587_47	UniRef90	UniRef90_R6GTK3	Single-stranded DNA-binding protein	NA
UHGV-0111587_47	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0111587_47	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0111587_47	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0111587_47	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0111587_47	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0111587_47	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0111587_48	PHROG	phrog_824	NA	unknown function
UHGV-0111587_48	UniRef90	UniRef90_A0A3R6I6C8	VRR-NUC domain-containing protein	NA
UHGV-0111587_48	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0111587_48	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0111587_48	Structural annotation	PF08774	NA	NA