UHGV-0111593

Genome information

Genome length 37,991 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111593
vOTU ID	vOTU-007804
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_249249
BioSample	SAMEA3708871
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.44
Jumbo phage	No

Genome content
Genome length	37,991 bps
GC content	40.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	94.39%
Average CDS length	622.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111593_1	KOfam	K14059	int; integrase	NA
UHGV-0111593_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0111593_1	UniRef90	UniRef90_A0A3R6QDD5	Site-specific integrase	NA
UHGV-0111593_1	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0111593_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0111593_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0111593_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0111593_2	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0111593_3	PHROG	phrog_20886	NA	unknown function
UHGV-0111593_3	eggNOG-mapper	476272.RUMHYD_02825	NA	NA
UHGV-0111593_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0111593_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0111593_4	UniRef90	UniRef90_A0A416ZY02	XRE family transcriptional regulator	NA
UHGV-0111593_4	eggNOG-mapper	626523.GCWU000342_01050	Helix-turn-helix	NA
UHGV-0111593_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111593_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111593_4	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0111593_5	UniRef90	UniRef90_A0A416ZXQ1	NA	NA
UHGV-0111593_5	eggNOG-mapper	626523.GCWU000342_01049	NA	NA
UHGV-0111593_5	Pfam	PF05339	NA	DUF739
UHGV-0111593_5	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0111593_5	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0111593_8	UniRef90	UniRef90_R5VU56	HTH_11 domain-containing protein	NA
UHGV-0111593_8	Structural annotation	PF20063	NA	NA
UHGV-0111593_10	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111593_10	UniRef90	UniRef90_A0A3R6XK93	Recombinase	NA
UHGV-0111593_10	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0111593_10	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0111593_10	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0111593_10	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0111593_10	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0111593_12	PHROG	phrog_674	NA	unknown function
UHGV-0111593_12	UniRef90	UniRef90_A0A417W7T9	NA	NA
UHGV-0111593_12	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0111593_12	Pfam	PF07083	NA	DUF1351
UHGV-0111593_12	Structural annotation	PF07083	NA	NA
UHGV-0111593_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0111593_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0111593_14	UniRef90	UniRef90_A0A416ZXI3	Recombinase	NA
UHGV-0111593_14	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0111593_14	Pfam	PF03837	RecT family	RecT
UHGV-0111593_14	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0111593_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0111593_14	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0111593_15	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0111593_15	UniRef90	UniRef90_A0A417W6H7	NA	NA
UHGV-0111593_15	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0111593_15	Pfam	PF06356	NA	DUF1064
UHGV-0111593_15	Structural annotation	PF06356	NA	NA
UHGV-0111593_16	eggNOG-mapper	1203606.HMPREF1526_01684	NA	NA
UHGV-0111593_17	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0111593_17	UniRef90	UniRef90_A0A417W6N9	Phage_rep_org_N domain-containing protein	NA
UHGV-0111593_17	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-0111593_17	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0111593_17	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0111593_17	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0111593_19	PHROG	phrog_9804	NA	unknown function
UHGV-0111593_19	UniRef90	UniRef90_A0A3R6Y4B9	Inhibitor_G39P domain-containing protein	NA
UHGV-0111593_19	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0111593_19	AcrCatalog	cluster_137185	NA	NA
UHGV-0111593_19	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0111593_19	Structural annotation	PF11417	NA	NA
UHGV-0111593_20	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-0111593_23	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0111593_23	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0111593_23	eggNOG-mapper	411461.DORFOR_01142	NA	NA
UHGV-0111593_23	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0111593_23	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0111593_24	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0111593_24	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0111593_24	UniRef90	UniRef90_A0A3A6J7Y8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0111593_24	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0111593_24	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0111593_24	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0111593_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0111593_24	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0111593_25	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-0111593_29	PHROG	phrog_874	NA	unknown function
UHGV-0111593_29	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0111593_29	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0111593_29	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0111593_30	PHROG	phrog_8684	NA	unknown function
UHGV-0111593_30	UniRef90	UniRef90_A0A3A6J9I1	YopX domain-containing protein	NA
UHGV-0111593_30	eggNOG-mapper	1497679.EP56_02820	YopX protein	NA
UHGV-0111593_30	Pfam	PF09643	YopX protein	YopX
UHGV-0111593_30	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0111593_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0111593_32	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0111593_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0111593_32	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0111593_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0111593_34	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0111593_34	UniRef90	UniRef90_A0A416IA81	Terminase small subunit	NA
UHGV-0111593_34	eggNOG-mapper	445971.ANASTE_00710	Terminase small subunit	NA
UHGV-0111593_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0111593_34	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0111593_34	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0111593_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0111593_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0111593_35	UniRef90	UniRef90_A0A822LI54	Terminase_3 domain-containing protein	NA
UHGV-0111593_35	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0111593_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0111593_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0111593_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0111593_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111593_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0111593_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-0111593_36	UniRef90	UniRef90_A0A3R6UWR4	Phage portal protein	NA
UHGV-0111593_36	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0111593_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0111593_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0111593_37	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0111593_37	Structural annotation	PF10651	NA	NA
UHGV-0111593_39	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0111593_39	UniRef90	UniRef90_A0A416ZY09	Phage_Mu_F domain-containing protein	NA
UHGV-0111593_39	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0111593_39	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0111593_39	COG	COG2369	NA	NA
UHGV-0111593_39	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0111593_40	Structural annotation	PF11344	NA	NA
UHGV-0111593_41	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0111593_41	UniRef90	UniRef90_UPI000E5C7AD7	phage scaffolding protein	NA
UHGV-0111593_41	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-0111593_41	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0111593_41	Structural annotation	PF06810	NA	NA
UHGV-0111593_42	PHROG	phrog_212	major head protein	head and packaging
UHGV-0111593_42	UniRef90	UniRef90_A0A3A6J9J0	Phage capsid protein	NA
UHGV-0111593_42	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0111593_42	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0111593_44	PHROG	phrog_1236	head protein	head and packaging
UHGV-0111593_44	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0111593_44	Structural annotation	PF05135	NA	NA
UHGV-0111593_45	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0111593_45	UniRef90	UniRef90_R6E225	Putative phage head-tail adaptor	NA
UHGV-0111593_45	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0111593_45	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0111593_46	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0111593_46	UniRef90	UniRef90_A0A416I9Q2	HK97 gp10 family phage protein	NA
UHGV-0111593_46	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0111593_46	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0111593_47	PHROG	phrog_957	head protein	head and packaging
UHGV-0111593_47	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0111593_47	Structural annotation	PF12691	NA	NA
UHGV-0111593_48	PHROG	phrog_885	major tail protein	tail
UHGV-0111593_48	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0111593_48	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0111593_49	PHROG	phrog_1021	NA	unknown function
UHGV-0111593_49	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0111593_50	PHROG	phrog_1294	peptide methionine sulfoxide reductase	other
UHGV-0111593_51	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0111593_51	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0111593_51	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0111593_51	Structural annotation	PF20155, MF_04138, COG3941	NA	NA
UHGV-0111593_52	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-0111593_52	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-0111593_52	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0111593_53	PHROG	phrog_538	minor tail protein	tail
UHGV-0111593_53	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0111593_53	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0111593_53	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0111593_53	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0111593_54	PHROG	phrog_9994	NA	unknown function
UHGV-0111593_54	eggNOG-mapper	742723.HMPREF9477_00894	NA	NA
UHGV-0111593_55	PHROG	phrog_199	holin	lysis
UHGV-0111593_55	UniRef90	UniRef90_A0A417W6L6	Holin	NA
UHGV-0111593_55	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0111593_55	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0111593_55	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0111593_55	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0111593_55	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0111593_56	KOfam	K19220	cwlS; peptidoglycan DL-endopeptidase CwlS [EC:3.4.-.-]	NA
UHGV-0111593_56	PHROG	phrog_9589	endolysin	lysis
UHGV-0111593_56	UniRef90	UniRef90_UPI001571512E	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0111593_56	eggNOG-mapper	97139.C824_00684	lysozyme activity	NA
UHGV-0111593_56	Pfam	PF05257	CHAP domain	CHAP
UHGV-0111593_56	Pfam	PF01476	LysM domain	LysM
UHGV-0111593_56	COG	COG1388	LysM repeat	NA
UHGV-0111593_56	Structural annotation	PF01476, PF10030, MF_02014, TIGR02594, NF004974, COG1388, COG4322	NA	NA
UHGV-0111593_58	KOfam	K18808	TLR13; toll-like receptor 13	NA
UHGV-0111593_58	PHROG	phrog_35892	NA	unknown function
UHGV-0111593_58	UniRef90	UniRef90_A0A3R6NB22	Leucine-rich repeat domain-containing protein	NA
UHGV-0111593_58	eggNOG-mapper	411489.CLOL250_02668	COG COG3291 FOG PKD repeat	NA
UHGV-0111593_58	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0111593_58	Pfam	PF13855	Leucine rich repeat	LRR_8
UHGV-0111593_58	COG	COG5492	NA	NA