UHGV-0111752

Genome information

Genome length 28,530 bps

CDS count 49

Completeness 70.89% (medium-quality)

geNomad score 0.9655

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111752
vOTU ID	vOTU-031086
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253420
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9655
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.67
Jumbo phage	No

Genome content
Genome length	28,530 bps
GC content	34.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.43%
Average CDS length	534.98 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111752_1	PHROG	phrog_1194	NA	unknown function
UHGV-0111752_1	eggNOG-mapper	1280692.AUJL01000027_gene2149	NA	NA
UHGV-0111752_1	Pfam	PF20458	NA	DUF6711
UHGV-0111752_1	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0111752_2	PHROG	phrog_31409	tail length tape measure protein	tail
UHGV-0111752_2	UniRef90	UniRef90_A0A1C6I104	Phage-related protein	NA
UHGV-0111752_2	eggNOG-mapper	1280689.AUJC01000003_gene976	phage tail tape measure protein	NA
UHGV-0111752_2	COG	COG5283	Phage-related tail protein	NA
UHGV-0111752_2	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0111752_3	PHROG	phrog_2066	NA	unknown function
UHGV-0111752_3	eggNOG-mapper	1499683.CCFF01000014_gene3901	NA	NA
UHGV-0111752_4	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0111752_4	UniRef90	UniRef90_UPI0012BCDD8A	NA	NA
UHGV-0111752_4	eggNOG-mapper	1499683.CCFF01000014_gene3902	NA	NA
UHGV-0111752_4	Pfam	PF19591	NA	DUF6096
UHGV-0111752_4	Structural annotation	PF19591	NA	NA
UHGV-0111752_5	PHROG	phrog_158	major tail protein	tail
UHGV-0111752_5	UniRef90	UniRef90_A0A6A8SN94	Phage tail protein	NA
UHGV-0111752_5	eggNOG-mapper	1499683.CCFF01000014_gene3903	Phage tail tube protein, TTP	NA
UHGV-0111752_5	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0111752_5	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0111752_6	PHROG	phrog_78	tail terminator	connector
UHGV-0111752_6	eggNOG-mapper	1499683.CCFF01000014_gene3904	NA	NA
UHGV-0111752_6	Structural annotation	PF05657	NA	NA
UHGV-0111752_7	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0111752_7	UniRef90	UniRef90_UPI0018A8B53E	HK97 gp10 family phage protein	NA
UHGV-0111752_7	eggNOG-mapper	1499683.CCFF01000014_gene3905	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0111752_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0111752_7	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0111752_7	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0111752_8	PHROG	phrog_2168	NA	unknown function
UHGV-0111752_8	eggNOG-mapper	1280689.AUJC01000003_gene969	NA	NA
UHGV-0111752_8	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0111752_9	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0111752_9	UniRef90	UniRef90_A0A6I1BEL2	Phage head-tail adapter protein	NA
UHGV-0111752_9	eggNOG-mapper	996306.SSUR61_0983	NA	NA
UHGV-0111752_9	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0111752_9	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0111752_10	PHROG	phrog_422	major head protein	head and packaging
UHGV-0111752_10	UniRef90	UniRef90_A0A6I1BLW9	Capsid protein	NA
UHGV-0111752_10	eggNOG-mapper	1280689.AUJC01000003_gene967	NA	NA
UHGV-0111752_10	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0111752_11	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0111752_11	UniRef90	UniRef90_A0A6I1BF23	NA	NA
UHGV-0111752_11	eggNOG-mapper	1280689.AUJC01000003_gene966	NA	NA
UHGV-0111752_11	Pfam	PF14265	NA	DUF4355
UHGV-0111752_11	Structural annotation	PF14265	NA	NA
UHGV-0111752_12	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0111752_12	UniRef90	UniRef90_A0A6I1BEA7	Phage head morphogenesis protein	NA
UHGV-0111752_12	eggNOG-mapper	1280689.AUJC01000003_gene964	Phage Mu protein F like protein	NA
UHGV-0111752_12	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0111752_12	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0111752_12	COG	COG2369	NA	NA
UHGV-0111752_12	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0111752_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-0111752_14	UniRef90	UniRef90_A0A6I1BGM9	Phage portal protein	NA
UHGV-0111752_14	eggNOG-mapper	1294142.CINTURNW_1684	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0111752_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0111752_14	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0111752_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0111752_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0111752_15	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0111752_15	UniRef90	UniRef90_A0A6I1BJB4	PBSX family phage terminase large subunit	NA
UHGV-0111752_15	eggNOG-mapper	1395513.P343_07995	Phage terminase large subunit	NA
UHGV-0111752_15	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0111752_15	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0111752_15	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0111752_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111752_15	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0111752_16	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0111752_16	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0111752_16	UniRef90	UniRef90_UPI0012BBDE1A	terminase small subunit	NA
UHGV-0111752_16	eggNOG-mapper	545697.HMPREF0216_02842	Phage terminase, large subunit, PBSX family	NA
UHGV-0111752_16	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0111752_16	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0111752_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111752_17	Structural annotation	PF06530, MF_00245, NF008895, COG1595	NA	NA
UHGV-0111752_23	PHROG	phrog_4643	NA	unknown function
UHGV-0111752_24	PHROG	phrog_23822	NA	unknown function
UHGV-0111752_25	UniRef90	UniRef90_A0A6I3NF12	Helix-turn-helix domain-containing protein	NA
UHGV-0111752_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111752_26	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0111752_26	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0111752_26	UniRef90	UniRef90_A0A6I3NDD5	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0111752_26	eggNOG-mapper	702450.CUW_0526	Endodeoxyribonuclease RusA	NA
UHGV-0111752_26	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0111752_26	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0111752_26	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0111752_27	PHROG	phrog_398	NA	unknown function
UHGV-0111752_27	UniRef90	UniRef90_UPI0018A92F56	putative HNHc nuclease	NA
UHGV-0111752_27	eggNOG-mapper	702450.CUW_0525	Putative HNHc nuclease	NA
UHGV-0111752_27	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0111752_27	Structural annotation	PF16784	NA	NA
UHGV-0111752_28	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0111752_28	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0111752_28	UniRef90	UniRef90_A0A844JR66	Recombination protein RecT	NA
UHGV-0111752_28	eggNOG-mapper	1536770.R50345_05895	repair protein	NA
UHGV-0111752_28	Pfam	PF03837	RecT family	RecT
UHGV-0111752_28	NCBIFam	NF007351.0	recombination protein RecT	NA
UHGV-0111752_28	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0111752_28	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0111752_29	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111752_29	UniRef90	UniRef90_A0A844JQL1	YqaJ domain-containing protein	NA
UHGV-0111752_29	eggNOG-mapper	1179226.AJXO01000005_gene1824	YqaJ-like viral recombinase domain	NA
UHGV-0111752_29	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0111752_29	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0111752_29	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0111752_29	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0111752_30	eggNOG-mapper	1321820.HMPREF1983_00940	NA	NA
UHGV-0111752_30	Structural annotation	PF11195	NA	NA
UHGV-0111752_33	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0111752_33	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0111752_33	UniRef90	UniRef90_A0A844JJT0	SpoVT-AbrB domain-containing protein	NA
UHGV-0111752_33	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0111752_34	PHROG	phrog_9804	NA	unknown function
UHGV-0111752_34	UniRef90	UniRef90_A0A6A8SK39	Inhibitor_G39P domain-containing protein	NA
UHGV-0111752_34	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0111752_34	Structural annotation	PF11417	NA	NA
UHGV-0111752_35	PHROG	phrog_1163	NA	unknown function
UHGV-0111752_35	UniRef90	UniRef90_A0A6A8SKU0	Prephenate dehydrogenase	NA
UHGV-0111752_35	eggNOG-mapper	764562.D7RWM9_9CAUD	calcium ion binding	NA
UHGV-0111752_35	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0111752_35	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0111752_35	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0111752_35	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG5529	NA	NA
UHGV-0111752_38	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0111752_38	UniRef90	UniRef90_UPI001D071048	NA	NA
UHGV-0111752_38	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-0111752_38	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0111752_40	PHROG	phrog_419	NA	unknown function
UHGV-0111752_40	eggNOG-mapper	476272.RUMHYD_03324	NA	NA
UHGV-0111752_41	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0111752_41	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0111752_41	UniRef90	UniRef90_A0A844JSC4	Helix-turn-helix domain-containing protein	NA
UHGV-0111752_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111752_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111752_41	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0111752_42	PHROG	phrog_585	NA	unknown function
UHGV-0111752_42	UniRef90	UniRef90_UPI0005E061FE	NA	NA
UHGV-0111752_42	eggNOG-mapper	1423755.BAML01000004_gene410	NA	NA
UHGV-0111752_42	Pfam	PF10711	NA	DUF2513
UHGV-0111752_42	Structural annotation	PF10711, TIGR04176, COG5045	NA	NA
UHGV-0111752_44	UniRef90	UniRef90_A0A6I1BLM3	Helix-turn-helix domain-containing protein	NA
UHGV-0111752_44	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0111752_44	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0111752_44	COG	COG0789	DNA-binding transcriptional regulator, MerR family	NA
UHGV-0111752_46	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0111752_46	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0111752_46	UniRef90	UniRef90_A0A6I1BHY4	ANT domain-containing protein	NA
UHGV-0111752_46	eggNOG-mapper	224308.BSU20670	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0111752_46	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0111752_46	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0111752_46	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0111752_46	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0111752_47	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0111752_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0111752_47	UniRef90	UniRef90_A0A6A8SKS9	Helix-turn-helix domain-containing protein	NA
UHGV-0111752_47	eggNOG-mapper	1232452.BAIB02000003_gene385	Helix-turn-helix XRE-family like proteins	NA
UHGV-0111752_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111752_47	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0111752_47	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0111752_48	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0111752_48	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0111752_48	UniRef90	UniRef90_A0A6A8SMJ3	Helix-turn-helix domain-containing protein	NA
UHGV-0111752_48	eggNOG-mapper	908337.HMPREF9257_0568	Peptidase S24-like	NA
UHGV-0111752_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111752_48	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0111752_48	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0111752_48	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0111752_49	KOfam	K14059	int; integrase	NA
UHGV-0111752_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0111752_49	UniRef90	UniRef90_A0A6I1BF48	Site-specific integrase	NA
UHGV-0111752_49	eggNOG-mapper	702450.CUW_0508	Phage integrase family	NA
UHGV-0111752_49	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0111752_49	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0111752_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0111752_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0111752_49	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA