UHGV-0111800

Genome information

vOTU vOTU-019987

Genome length 30,390 bps

CDS count 38

Completeness 78.12% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111800
vOTU ID	vOTU-019987
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_252414
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.59
Jumbo phage	No

Genome content
Genome length	30,390 bps
GC content	45.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	93.25%
Average CDS length	750.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111800_1	PHROG	phrog_16164	NA	unknown function
UHGV-0111800_1	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0111800_2	eggNOG-mapper	1408428.JNJP01000079_gene3365	Phage tail-collar fibre protein	NA
UHGV-0111800_2	COG	COG4675	Phage tail collar domain	NA
UHGV-0111800_2	Structural annotation	PF18614, MF_00216, NF003076, COG1585	NA	NA
UHGV-0111800_3	PHROG	phrog_6616	tail protein	tail
UHGV-0111800_3	UniRef90	UniRef90_UPI00085BC306	tail fiber domain-containing protein	NA
UHGV-0111800_3	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0111800_3	COG	COG4926	Phage-related protein	NA
UHGV-0111800_3	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0111800_4	PHROG	phrog_1194	NA	unknown function
UHGV-0111800_4	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0111800_4	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0111800_5	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0111800_5	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0111800_5	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0111800_5	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0111800_5	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0111800_6	PHROG	phrog_8355	NA	unknown function
UHGV-0111800_6	UniRef90	UniRef90_UPI001C031F13	Gp15 family bacteriophage protein	NA
UHGV-0111800_6	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0111800_7	PHROG	phrog_8300	NA	unknown function
UHGV-0111800_7	eggNOG-mapper	1282664.H354_06701	NA	NA
UHGV-0111800_7	Structural annotation	PF06854	NA	NA
UHGV-0111800_8	PHROG	phrog_820	major tail protein	tail
UHGV-0111800_8	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0111800_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0111800_9	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0111800_9	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-0111800_9	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0111800_9	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0111800_9	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0111800_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0111800_10	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0111800_11	PHROG	phrog_8710	NA	unknown function
UHGV-0111800_11	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0111800_11	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0111800_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0111800_12	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0111800_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-0111800_13	UniRef90	UniRef90_UPI001C03381A	phage capsid protein	NA
UHGV-0111800_13	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0111800_13	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0111800_14	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0111800_14	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0111800_15	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0111800_15	UniRef90	UniRef90_A0A3R6TX12	NA	NA
UHGV-0111800_15	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0111800_15	Pfam	PF14359	NA	DUF4406
UHGV-0111800_15	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0111800_16	PHROG	phrog_918	NA	unknown function
UHGV-0111800_16	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0111800_16	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0111800_16	Pfam	PF19791	NA	DUF6275
UHGV-0111800_16	Structural annotation	PF19791	NA	NA
UHGV-0111800_17	PHROG	phrog_21498	NA	unknown function
UHGV-0111800_17	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0111800_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0111800_17	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0111800_18	Structural annotation	PF21279, NF040942	NA	NA
UHGV-0111800_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0111800_19	UniRef90	UniRef90_A0A1C5VPR8	ATPase involved in DNA repair	NA
UHGV-0111800_19	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0111800_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0111800_19	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0111800_19	Structural annotation	PF06152, PF21814	NA	NA
UHGV-0111800_20	PHROG	phrog_25639	NA	unknown function
UHGV-0111800_20	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0111800_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0111800_21	UniRef90	UniRef90_UPI001C03775E	capsid protein	NA
UHGV-0111800_21	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0111800_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0111800_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0111800_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0111800_22	UniRef90	UniRef90_UPI001C02BD5C	terminase	NA
UHGV-0111800_22	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0111800_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111800_22	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0111800_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0111800_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0111800_23	UniRef90	UniRef90_UPI001C0332B0	terminase small subunit	NA
UHGV-0111800_23	eggNOG-mapper	1304866.K413DRAFT_0812	Terminase small subunit	NA
UHGV-0111800_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0111800_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0111800_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0111800_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0111800_25	UniRef90	UniRef90_A0A3A9HG24	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0111800_25	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-0111800_25	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0111800_27	PHROG	phrog_9958	NA	unknown function
UHGV-0111800_27	UniRef90	UniRef90_A0A412ELZ1	NA	NA
UHGV-0111800_27	Pfam	PF19789	NA	DUF6273
UHGV-0111800_27	Structural annotation	PF19789	NA	NA
UHGV-0111800_29	PHROG	phrog_8684	NA	unknown function
UHGV-0111800_29	UniRef90	UniRef90_A0A1C6E0T1	YopX protein	NA
UHGV-0111800_29	eggNOG-mapper	1423816.BACQ01000027_gene952	YopX protein	NA
UHGV-0111800_29	Pfam	PF09643	YopX protein	YopX
UHGV-0111800_29	Pfam	PF04448	NA	DUF551
UHGV-0111800_29	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0111800_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0111800_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0111800_31	UniRef90	UniRef90_A0A1C6E0P5	Single-stranded DNA-binding protein	NA
UHGV-0111800_31	eggNOG-mapper	411459.RUMOBE_01742	NA	NA
UHGV-0111800_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0111800_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0111800_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0111800_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0111800_31	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0111800_32	PHROG	phrog_23707	NA	unknown function
UHGV-0111800_32	UniRef90	UniRef90_A0A1Q6KU34	NA	NA
UHGV-0111800_32	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0111800_32	Pfam	PF04448	NA	DUF551
UHGV-0111800_33	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0111800_33	PHROG	phrog_15982	NA	unknown function
UHGV-0111800_33	UniRef90	UniRef90_A7AY48	ParB domain-containing protein	NA
UHGV-0111800_33	eggNOG-mapper	411470.RUMGNA_00213	ParB-like nuclease domain	NA
UHGV-0111800_33	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0111800_33	Pfam	PF12961	NA	DUF3850
UHGV-0111800_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0111800_33	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0111800_34	eggNOG-mapper	411470.RUMGNA_00212	NA	NA
UHGV-0111800_35	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0111800_35	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0111800_35	UniRef90	UniRef90_A0A1Q6KU49	AAA_31 domain-containing protein	NA
UHGV-0111800_35	eggNOG-mapper	411470.RUMGNA_00210	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0111800_35	Pfam	PF13614	AAA domain	AAA_31
UHGV-0111800_35	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0111800_35	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0111800_36	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0111800_37	PHROG	phrog_824	NA	unknown function
UHGV-0111800_37	UniRef90	UniRef90_A0A414DFB5	VRR-NUC domain-containing protein	NA
UHGV-0111800_37	eggNOG-mapper	411470.RUMGNA_00207	VRR_NUC	NA
UHGV-0111800_37	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0111800_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0111800_38	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0111800_38	eggNOG-mapper	411470.RUMGNA_00203	COG NOG14934 non supervised orthologous group	NA