UHGV-0111808

Genome information

Genome length 36,890 bps

CDS count 49

Completeness 65.89% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111808
vOTU ID	vOTU-038845
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_248859
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.38
Jumbo phage	No

Genome content
Genome length	36,890 bps
GC content	40.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.29%
Average CDS length	689.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111808_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0111808_1	PHROG	phrog_35436	amidase	lysis
UHGV-0111808_1	UniRef90	UniRef90_UPI001D016E56	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0111808_1	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-0111808_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0111808_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0111808_1	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0111808_2	PHROG	phrog_1129	holin	lysis
UHGV-0111808_2	UniRef90	UniRef90_UPI001D072DD9	phage holin family protein	NA
UHGV-0111808_2	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0111808_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0111808_2	Structural annotation	PF16079	NA	NA
UHGV-0111808_3	PHROG	phrog_4105	NA	unknown function
UHGV-0111808_3	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0111808_4	eggNOG-mapper	457412.RSAG_04673	NA	NA
UHGV-0111808_5	PHROG	phrog_20274	NA	unknown function
UHGV-0111808_5	UniRef90	UniRef90_A0A174K025	Predicted membrane protein	NA
UHGV-0111808_5	eggNOG-mapper	1298920.KI911353_gene4880	NA	NA
UHGV-0111808_5	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0111808_5	COG	COG4905	NA	NA
UHGV-0111808_5	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0111808_6	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0111808_6	UniRef90	UniRef90_UPI001C0F60E0	acyl carrier protein	NA
UHGV-0111808_6	eggNOG-mapper	608534.GCWU000341_02274	NA	NA
UHGV-0111808_6	Structural annotation	PF14301	NA	NA
UHGV-0111808_7	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0111808_7	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0111808_7	UniRef90	UniRef90_D4J8M1	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0111808_7	eggNOG-mapper	657322.FPR_27160	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0111808_7	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0111808_7	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0111808_8	PHROG	phrog_17147	NA	unknown function
UHGV-0111808_8	eggNOG-mapper	657322.FPR_27150	NA	NA
UHGV-0111808_10	PHROG	phrog_11105	NA	unknown function
UHGV-0111808_12	PHROG	phrog_9886	NA	unknown function
UHGV-0111808_12	UniRef90	UniRef90_UPI0002D787EE	phage tail protein	NA
UHGV-0111808_12	eggNOG-mapper	1235792.C808_03048	Prophage endopeptidase tail	NA
UHGV-0111808_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0111808_12	COG	COG4926	Phage-related protein	NA
UHGV-0111808_12	Structural annotation	PF14594, PF04862, PF20843, TIGR01665, NF033675, COG4926, COG4266	NA	NA
UHGV-0111808_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0111808_13	UniRef90	UniRef90_D4J8M6	Phage tail protein	NA
UHGV-0111808_13	eggNOG-mapper	1235792.C808_05349	NA	NA
UHGV-0111808_13	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0111808_14	PHROG	phrog_19074	NA	unknown function
UHGV-0111808_14	UniRef90	UniRef90_A0A391P3M6	PhageMin_Tail domain-containing protein	NA
UHGV-0111808_14	eggNOG-mapper	1235792.C808_05377	Phage tail tape measure protein, TP901 family	NA
UHGV-0111808_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0111808_14	Pfam	PF04691	Apolipoprotein C-I (ApoC-1)	ApoC-I
UHGV-0111808_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0111808_14	COG	COG5283	Phage-related tail protein	NA
UHGV-0111808_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0111808_15	PHROG	phrog_706	NA	unknown function
UHGV-0111808_15	UniRef90	UniRef90_D4J8M9	Bacteriophage Gp15 protein	NA
UHGV-0111808_15	eggNOG-mapper	931276.Cspa_c07530	Bacteriophage Gp15 protein	NA
UHGV-0111808_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0111808_15	Structural annotation	PF06854	NA	NA
UHGV-0111808_16	PHROG	phrog_4450	NA	unknown function
UHGV-0111808_16	UniRef90	UniRef90_A0A416RQL6	AP endonuclease	NA
UHGV-0111808_16	eggNOG-mapper	931276.Cspa_c07520	NA	NA
UHGV-0111808_16	Pfam	PF20378	NA	DUF6673
UHGV-0111808_16	Structural annotation	PF20378	NA	NA
UHGV-0111808_17	PHROG	phrog_3099	NA	unknown function
UHGV-0111808_17	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-0111808_17	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0111808_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0111808_18	PHROG	phrog_3266	tail completion	connector
UHGV-0111808_18	UniRef90	UniRef90_UPI001570657D	chloramphenicol resistance protein	NA
UHGV-0111808_18	eggNOG-mapper	1321782.HMPREF1986_02272	NA	NA
UHGV-0111808_18	Structural annotation	PF12691	NA	NA
UHGV-0111808_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0111808_19	UniRef90	UniRef90_UPI001D074B8B	minor capsid protein	NA
UHGV-0111808_19	eggNOG-mapper	1321782.HMPREF1986_02271	NA	NA
UHGV-0111808_19	Structural annotation	PF11114	NA	NA
UHGV-0111808_20	PHROG	phrog_3366	NA	unknown function
UHGV-0111808_20	eggNOG-mapper	632245.CLP_1651	NA	NA
UHGV-0111808_20	Pfam	PF20536	NA	DUF6751
UHGV-0111808_20	Structural annotation	PF20536	NA	NA
UHGV-0111808_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0111808_21	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-0111808_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0111808_23	UniRef90	UniRef90_A0A391PHY8	Phage capsid protein	NA
UHGV-0111808_23	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0111808_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0111808_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0111808_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0111808_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0111808_24	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0111808_24	eggNOG-mapper	411461.DORFOR_00745	NA	NA
UHGV-0111808_24	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0111808_25	KOfam	K07584	NA	NA
UHGV-0111808_25	PHROG	phrog_4478	peptidase	other
UHGV-0111808_25	UniRef90	UniRef90_UPI001D015AF1	ribosomal-processing cysteine protease Prp	NA
UHGV-0111808_25	eggNOG-mapper	411461.DORFOR_00746	Pfam:Peptidase_C108	NA
UHGV-0111808_25	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0111808_25	COG	COG2868	NA	NA
UHGV-0111808_25	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0111808_26	eggNOG-mapper	411461.DORFOR_00747	NA	NA
UHGV-0111808_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0111808_27	UniRef90	UniRef90_A0A3E5EL65	Minor capsid protein	NA
UHGV-0111808_27	eggNOG-mapper	411461.DORFOR_00748	NA	NA
UHGV-0111808_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0111808_27	COG	COG2369	NA	NA
UHGV-0111808_27	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0111808_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0111808_28	UniRef90	UniRef90_A0A173TXV5	Phage portal protein, putative, A118 family	NA
UHGV-0111808_28	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-0111808_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0111808_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0111808_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0111808_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0111808_29	UniRef90	UniRef90_A0A373SU52	PBSX family phage terminase large subunit	NA
UHGV-0111808_29	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0111808_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0111808_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0111808_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0111808_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111808_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0111808_30	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0111808_30	UniRef90	UniRef90_UPI001D08C3AD	phage terminase small subunit	NA
UHGV-0111808_30	eggNOG-mapper	1449050.JNLE01000003_gene3896	DNA packaging	NA
UHGV-0111808_30	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0111808_30	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0111808_30	COG	COG5484	NA	NA
UHGV-0111808_30	Structural annotation	PF10668, PF01920, NF040601, COG5484	NA	NA
UHGV-0111808_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0111808_31	UniRef90	UniRef90_UPI001571211B	NA	NA
UHGV-0111808_31	eggNOG-mapper	665950.HMPREF1025_02539	sigma factor activity	NA
UHGV-0111808_31	Pfam	PF07374	NA	DUF1492
UHGV-0111808_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0111808_31	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0111808_32	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0111808_34	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0111808_34	UniRef90	UniRef90_UPI000E3E3572	DnaD domain protein	NA
UHGV-0111808_34	eggNOG-mapper	642492.Clole_1479	DnaD domain protein	NA
UHGV-0111808_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0111808_35	PHROG	phrog_8492	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0111808_35	UniRef90	UniRef90_UPI0001F01BA4	NA	NA
UHGV-0111808_35	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0111808_35	Pfam	PF06378	NA	DUF1071
UHGV-0111808_35	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0111808_39	PHROG	phrog_6058	NA	unknown function
UHGV-0111808_39	UniRef90	UniRef90_A0A374E7W1	XRE family transcriptional regulator	NA
UHGV-0111808_39	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0111808_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111808_39	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0111808_40	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0111808_40	UniRef90	UniRef90_A0A373ILI2	Phage repressor protein	NA
UHGV-0111808_40	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0111808_40	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0111808_40	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0111808_40	COG	COG3617	Prophage antirepressor	NA
UHGV-0111808_40	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0111808_41	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0111808_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0111808_41	UniRef90	UniRef90_UPI00156E0BE9	tyrosine-type recombinase/integrase	NA
UHGV-0111808_41	eggNOG-mapper	565653.EGBG_01953	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0111808_41	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0111808_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0111808_41	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0111808_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0111808_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0111808_44	UniRef90	UniRef90_A0A1C6HZ25	Antitoxin PezA	NA
UHGV-0111808_44	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0111808_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111808_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111808_44	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0111808_45	UniRef90	UniRef90_A0A174LY22	Antitoxin PezA	NA
UHGV-0111808_45	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0111808_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111808_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0111808_47	UniRef90	UniRef90_A0A1E3UPM2	HTH cro/C1-type domain-containing protein	NA
UHGV-0111808_47	eggNOG-mapper	1235792.C808_00647	Helix-turn-helix XRE-family like proteins	NA
UHGV-0111808_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111808_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111808_48	eggNOG-mapper	1203606.HMPREF1526_01315	NA	NA
UHGV-0111808_49	KOfam	K14059	int; integrase	NA
UHGV-0111808_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0111808_49	UniRef90	UniRef90_A0A564WTT7	Site-specific tyrosine recombinase XerC	NA
UHGV-0111808_49	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-0111808_49	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0111808_49	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0111808_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0111808_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0111808_49	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA