UHGV-0111814

Genome information

Genome length 30,457 bps

CDS count 35

Completeness 64.96% (medium-quality)

geNomad score 0.9672

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111814
vOTU ID	vOTU-042417
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_268018
BioSample	SAMEA3879603
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.96% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9672
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.46
Jumbo phage	No

Genome content
Genome length	30,457 bps
GC content	53.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	94.04%
Average CDS length	821.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111814_1	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0111814_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0111814_3	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0111814_3	UniRef90	UniRef90_R8VXJ1	Single-stranded DNA-binding protein	NA
UHGV-0111814_3	eggNOG-mapper	1203606.HMPREF1526_01880	Single-stranded DNA-binding protein	NA
UHGV-0111814_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0111814_3	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0111814_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0111814_3	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0111814_3	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0111814_4	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0111814_4	eggNOG-mapper	1122917.KB899659_gene5710	Replication initiation and membrane attachment	NA
UHGV-0111814_4	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0111814_4	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0111814_5	KOfam	K03700	recU; recombination protein U	NA
UHGV-0111814_5	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0111814_5	UniRef90	UniRef90_F4XCR3	Holliday junction resolvase RecU	NA
UHGV-0111814_5	eggNOG-mapper	1519439.JPJG01000051_gene717	Recombination protein U	NA
UHGV-0111814_5	Pfam	PF03838	Recombination protein U	RecU
UHGV-0111814_5	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0111814_5	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0111814_6	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0111814_6	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0111814_6	UniRef90	UniRef90_UPI001EDE4E20	MT-A70 family methyltransferase	NA
UHGV-0111814_6	eggNOG-mapper	1120971.AUCA01000037_gene2882	Belongs to the MT-A70-like family	NA
UHGV-0111814_6	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0111814_6	Pfam	PF05063	MT-A70	MT-A70
UHGV-0111814_6	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0111814_6	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0111814_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0111814_7	eggNOG-mapper	1203606.HMPREF1526_01896	NA	NA
UHGV-0111814_7	Pfam	PF07374	NA	DUF1492
UHGV-0111814_7	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0111814_8	PHROG	phrog_6203	NA	unknown function
UHGV-0111814_8	UniRef90	UniRef90_UPI0013563F0B	ATP-binding protein	NA
UHGV-0111814_8	eggNOG-mapper	1256908.HMPREF0373_00983	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	NA
UHGV-0111814_8	Pfam	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c_3
UHGV-0111814_8	Pfam	PF13588	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N_2
UHGV-0111814_8	COG	COG0323	DNA mismatch repair ATPase MutL	NA
UHGV-0111814_8	Structural annotation	MF_00505, NF003555, COG0323	NA	NA
UHGV-0111814_9	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0111814_9	UniRef90	UniRef90_UPI001D06EFA4	serine/arginine repetitive matrix protein 2	NA
UHGV-0111814_9	eggNOG-mapper	1519439.JPJG01000059_gene1917	NA	NA
UHGV-0111814_9	Structural annotation	PF06763	NA	NA
UHGV-0111814_10	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0111814_10	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0111814_10	UniRef90	UniRef90_A0A3A9BKD1	Protoporphyrinogen oxidase	NA
UHGV-0111814_10	eggNOG-mapper	1203606.HMPREF1526_01898	NA	NA
UHGV-0111814_10	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0111814_10	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0111814_11	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0111814_11	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0111814_11	UniRef90	UniRef90_UPI001D0878A2	phage terminase large subunit family protein	NA
UHGV-0111814_11	eggNOG-mapper	1203606.HMPREF1526_01899	Phage terminase large subunit (GpA)	NA
UHGV-0111814_11	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0111814_11	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0111814_11	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0111814_11	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0111814_11	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0111814_12	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0111814_12	UniRef90	UniRef90_A0A101WGN2	Chemotaxis protein	NA
UHGV-0111814_12	eggNOG-mapper	1519439.JPJG01000059_gene1920	NA	NA
UHGV-0111814_12	Structural annotation	PF19645	NA	NA
UHGV-0111814_13	PHROG	phrog_21	portal protein	head and packaging
UHGV-0111814_13	UniRef90	UniRef90_A0A417HQQ7	Phage portal protein	NA
UHGV-0111814_13	eggNOG-mapper	1519439.JPJG01000059_gene1921	Phage portal protein, lambda family	NA
UHGV-0111814_13	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0111814_13	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0111814_13	COG	COG5511	Phage capsid protein	NA
UHGV-0111814_13	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0111814_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0111814_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0111814_14	UniRef90	UniRef90_F4XCP6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0111814_14	eggNOG-mapper	1519439.JPJG01000059_gene1922	Clp protease	NA
UHGV-0111814_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0111814_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0111814_14	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0111814_15	PHROG	phrog_49	head decoration	head and packaging
UHGV-0111814_15	UniRef90	UniRef90_A0A174T1B2	Peptide-binding protein	NA
UHGV-0111814_15	eggNOG-mapper	552398.HMPREF0866_01612	NA	NA
UHGV-0111814_15	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-0111814_15	Structural annotation	PF02924	NA	NA
UHGV-0111814_16	PHROG	phrog_29	major head protein	head and packaging
UHGV-0111814_16	UniRef90	UniRef90_A0A1C6JH61	Phage major capsid protein E	NA
UHGV-0111814_16	eggNOG-mapper	1519439.JPJG01000059_gene1924	Phage major capsid protein E	NA
UHGV-0111814_16	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0111814_16	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0111814_17	PHROG	phrog_3281	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-0111814_17	UniRef90	UniRef90_F4XCP3	Rho_N domain-containing protein	NA
UHGV-0111814_17	eggNOG-mapper	552398.HMPREF0866_01610	NA	NA
UHGV-0111814_17	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0111814_17	Structural annotation	PF07498	NA	NA
UHGV-0111814_18	PHROG	phrog_2551	minor tail protein	tail
UHGV-0111814_18	UniRef90	UniRef90_R6Q2G1	Ribose import ATP-binding protein RbsA 1	NA
UHGV-0111814_18	eggNOG-mapper	552398.HMPREF0866_01609	NA	NA
UHGV-0111814_18	Structural annotation	PF13856	NA	NA
UHGV-0111814_19	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0111814_19	eggNOG-mapper	552398.HMPREF0866_01608	NA	NA
UHGV-0111814_19	Structural annotation	PF08873	NA	NA
UHGV-0111814_20	KOfam	K06907	NA	NA
UHGV-0111814_20	PHROG	phrog_23	tail sheath	tail
UHGV-0111814_20	UniRef90	UniRef90_A0A358PQ22	Phage tail sheath protein	NA
UHGV-0111814_20	eggNOG-mapper	1203606.HMPREF1526_01909	COG3497 Phage tail sheath protein FI	NA
UHGV-0111814_20	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0111814_20	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0111814_21	KOfam	K06908	NA	NA
UHGV-0111814_21	PHROG	phrog_55	head closure	connector
UHGV-0111814_21	UniRef90	UniRef90_UPI00189C1FC4	phage major tail tube protein	NA
UHGV-0111814_21	eggNOG-mapper	1519439.JPJG01000059_gene1929	Phage tail tube protein FII	NA
UHGV-0111814_21	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0111814_21	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0111814_22	PHROG	phrog_166	tail protein	tail
UHGV-0111814_22	UniRef90	UniRef90_UPI00189B7448	early nodulin 20 (N-20)	NA
UHGV-0111814_22	eggNOG-mapper	1203606.HMPREF1526_01911	NA	NA
UHGV-0111814_22	Structural annotation	PF10109, COG4518	NA	NA
UHGV-0111814_23	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0111814_23	UniRef90	UniRef90_UPI00189ABD44	phage tail tape measure protein	NA
UHGV-0111814_23	eggNOG-mapper	1519439.JPJG01000059_gene1931	Phage tail tape measure protein TP901	NA
UHGV-0111814_23	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0111814_23	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0111814_23	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0111814_23	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0111814_24	PHROG	phrog_46	tail protein	tail
UHGV-0111814_24	UniRef90	UniRef90_A0A174T8M1	LysM domain-containing protein	NA
UHGV-0111814_24	eggNOG-mapper	1203606.HMPREF1526_01913	Phage Tail Protein X	NA
UHGV-0111814_24	Structural annotation	PF05489, MF_02014, NF010723, COG5004	NA	NA
UHGV-0111814_25	KOfam	K06905	NA	NA
UHGV-0111814_25	PHROG	phrog_52	tail protein	tail
UHGV-0111814_25	UniRef90	UniRef90_A0A3A9D845	Phage late control D family protein	NA
UHGV-0111814_25	eggNOG-mapper	552398.HMPREF0866_01602	COG3500 Phage protein D	NA
UHGV-0111814_25	COG	COG3500	NA	NA
UHGV-0111814_25	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0111814_26	UniRef90	UniRef90_A0A174T820	Pre-mRNA-splicing factor	NA
UHGV-0111814_26	eggNOG-mapper	1519439.JPJG01000059_gene1934	NA	NA
UHGV-0111814_27	PHROG	phrog_15956	tail assembly protein	tail
UHGV-0111814_27	UniRef90	UniRef90_UPI00054F85E0	phage tail protein	NA
UHGV-0111814_27	eggNOG-mapper	1203606.HMPREF1526_01916	P2 GpU family protein	NA
UHGV-0111814_27	COG	COG3499	NA	NA
UHGV-0111814_27	Structural annotation	PF06995, TIGR02126, COG3499	NA	NA
UHGV-0111814_28	PHROG	phrog_15729	baseplate protein	tail
UHGV-0111814_28	UniRef90	UniRef90_A0A174T7Q2	Early E1A protein	NA
UHGV-0111814_28	eggNOG-mapper	552398.HMPREF0866_01599	NA	NA
UHGV-0111814_28	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0111814_29	PHROG	phrog_6	baseplate protein	tail
UHGV-0111814_29	UniRef90	UniRef90_A0A1Y4B8Z1	Integrase	NA
UHGV-0111814_29	eggNOG-mapper	1519439.JPJG01000059_gene1937	Baseplate J-like protein	NA
UHGV-0111814_29	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0111814_29	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0111814_29	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0111814_30	PHROG	phrog_14404	baseplate protein	tail
UHGV-0111814_30	UniRef90	UniRef90_F4XCN0	Phage tail protein I	NA
UHGV-0111814_30	eggNOG-mapper	1519439.JPJG01000059_gene1938	Phage tail protein (Tail_P2_I)	NA
UHGV-0111814_30	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0111814_30	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0111814_30	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0111814_30	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0111814_31	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0111814_31	UniRef90	UniRef90_UPI001AE5A230	phage tail protein	NA
UHGV-0111814_31	eggNOG-mapper	1203606.HMPREF1526_01920	nuclear chromosome segregation	NA
UHGV-0111814_31	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0111814_31	Structural annotation	PF12571	NA	NA
UHGV-0111814_32	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0111814_32	UniRef90	UniRef90_A0A7U9MVN4	Fibronectin type-III domain-containing protein	NA
UHGV-0111814_32	eggNOG-mapper	1519439.JPJG01000059_gene1944	NA	NA
UHGV-0111814_32	Pfam	PF19789	NA	DUF6273
UHGV-0111814_32	Structural annotation	PF19789, PF18911, PF00041, MF_04116, NF032891, COG3979	NA	NA
UHGV-0111814_33	UniRef90	UniRef90_A0A1V5KAU8	Bacterial SH3 domain protein	NA
UHGV-0111814_33	eggNOG-mapper	755731.Clo1100_1179	cysteine-type peptidase activity	NA
UHGV-0111814_33	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0111814_33	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0111814_34	PHROG	phrog_199	holin	lysis
UHGV-0111814_34	UniRef90	UniRef90_A0A1V5U0W9	Holin family protein	NA
UHGV-0111814_34	eggNOG-mapper	1286171.EAL2_c05460	Bacteriophage holin family	NA
UHGV-0111814_34	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0111814_34	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0111814_34	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0111814_34	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0111814_35	PHROG	phrog_559	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111814_35	UniRef90	UniRef90_UPI001BBD883B	Zinc-ribbon domain-containing protein	NA
UHGV-0111814_35	eggNOG-mapper	1203606.HMPREF1526_02403	Probable Zinc-ribbon domain	NA
UHGV-0111814_35	Pfam	PF14311	Probable Zinc-ribbon domain	DUF4379
UHGV-0111814_35	COG	COG1996	DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger	NA