UHGV-0111878

Genome information

Genome length 38,558 bps

CDS count 56

Completeness 81.75% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111878
vOTU ID	vOTU-026643
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_266519
BioSample	SAMEA3879579
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.75% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.24
Jumbo phage	No

Genome content
Genome length	38,558 bps
GC content	38.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.49%
Average CDS length	624.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111878_1	PHROG	phrog_3545	NA	unknown function
UHGV-0111878_1	eggNOG-mapper	1408424.JHYI01000002_gene4125	Belongs to the glycosyl hydrolase 43 family	NA
UHGV-0111878_1	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-0111878_1	COG	COG3507	Beta-xylosidase	NA
UHGV-0111878_2	PHROG	phrog_13879	NA	unknown function
UHGV-0111878_2	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0111878_2	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0111878_3	PHROG	phrog_1194	NA	unknown function
UHGV-0111878_3	eggNOG-mapper	665956.HMPREF1032_03056	NA	NA
UHGV-0111878_3	Pfam	PF20458	NA	DUF6711
UHGV-0111878_3	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0111878_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0111878_4	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0111878_4	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0111878_4	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0111878_4	Structural annotation	PF09325	NA	NA
UHGV-0111878_6	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0111878_7	PHROG	phrog_158	major tail protein	tail
UHGV-0111878_7	UniRef90	UniRef90_A0A350S1J9	Phage tail protein	NA
UHGV-0111878_7	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0111878_7	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0111878_8	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0111878_9	UniRef90	UniRef90_A0A7C7ERK4	HK97 gp10 family phage protein	NA
UHGV-0111878_9	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0111878_10	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0111878_11	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0111878_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0111878_11	Structural annotation	TIGR01560	NA	NA
UHGV-0111878_13	PHROG	phrog_247	major head protein	head and packaging
UHGV-0111878_13	UniRef90	UniRef90_A0A3D0LY55	Coat protein	NA
UHGV-0111878_13	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-0111878_13	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0111878_14	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0111878_14	UniRef90	UniRef90_UPI001E4D8165	NA	NA
UHGV-0111878_14	Pfam	PF14265	NA	DUF4355
UHGV-0111878_14	Structural annotation	PF14265	NA	NA
UHGV-0111878_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0111878_15	UniRef90	UniRef90_A0A3D0LYK0	Phage portal protein	NA
UHGV-0111878_15	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0111878_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0111878_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0111878_16	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0111878_16	UniRef90	UniRef90_A0A7G9WJY4	Phage terminase large subunit	NA
UHGV-0111878_16	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0111878_16	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0111878_16	COG	COG5410	NA	NA
UHGV-0111878_16	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0111878_19	Pfam	PF07275	Antirestriction protein (ArdA)	ArdA
UHGV-0111878_21	PHROG	phrog_21575	NA	unknown function
UHGV-0111878_28	eggNOG-mapper	537007.BLAHAN_05382	NA	NA
UHGV-0111878_28	Pfam	PF18129	Xrn1 SH3-like domain	SH3_12
UHGV-0111878_29	KOfam	K01491	folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]	NA
UHGV-0111878_29	PHROG	phrog_7320	tetrahydrofolate dehydrogenase and cyclohydrolase	other
UHGV-0111878_29	UniRef90	UniRef90_N1ZAG3	Bifunctional protein FolD	NA
UHGV-0111878_29	eggNOG-mapper	97138.C820_01305	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	NA
UHGV-0111878_29	Pfam	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain	THF_DHG_CYH
UHGV-0111878_29	Pfam	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	THF_DHG_CYH_C
UHGV-0111878_29	COG	COG0190	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	NA
UHGV-0111878_29	HAMAP	MF_01576	Bifunctional protein FolD [folD]	NA
UHGV-0111878_29	Structural annotation	PF02882, PF00763, MF_01576, NF010775, COG0190	NA	NA
UHGV-0111878_30	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0111878_30	PHROG	phrog_938	endolysin	lysis
UHGV-0111878_30	UniRef90	UniRef90_UPI001031CDEE	cell wall hydrolase	NA
UHGV-0111878_30	eggNOG-mapper	1274524.BSONL12_12176	COG3773 Cell wall hydrolyses involved in spore germination	NA
UHGV-0111878_30	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0111878_30	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0111878_31	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-0111878_31	PHROG	phrog_17284	NA	unknown function
UHGV-0111878_31	UniRef90	UniRef90_A0A350XVB1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0111878_31	eggNOG-mapper	742735.HMPREF9467_00858	C-5 cytosine-specific DNA methylase	NA
UHGV-0111878_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0111878_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0111878_31	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0111878_32	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0111878_32	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0111878_32	UniRef90	UniRef90_A0A1Y3WDT6	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0111878_32	eggNOG-mapper	1410658.JHWI01000001_gene1284	dUTP diphosphatase	NA
UHGV-0111878_32	Pfam	PF00692	dUTPase	dUTPase
UHGV-0111878_32	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0111878_32	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-0111878_34	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0111878_34	UniRef90	UniRef90_A0A1Y4EVK6	Adenine methyltransferase	NA
UHGV-0111878_34	eggNOG-mapper	411468.CLOSCI_00567	DNA N-6-adenine-methyltransferase	NA
UHGV-0111878_34	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0111878_34	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0111878_34	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0111878_35	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0111878_35	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0111878_35	UniRef90	UniRef90_A0A1E8F1L7	mRNA interferase	NA
UHGV-0111878_35	eggNOG-mapper	1321778.HMPREF1982_00975	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0111878_35	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0111878_35	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0111878_35	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0111878_37	KOfam	K04068	nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]	NA
UHGV-0111878_37	PHROG	phrog_626	anaerobic ribonucleotide reductase small subunit	DNA, RNA and nucleotide metabolism
UHGV-0111878_37	UniRef90	UniRef90_UPI0018A06F04	anaerobic ribonucleoside-triphosphate reductase activating protein	NA
UHGV-0111878_37	eggNOG-mapper	1280694.AUJQ01000001_gene2211	4Fe-4S single cluster domain	NA
UHGV-0111878_37	Pfam	PF13353	4Fe-4S single cluster domain	Fer4_12
UHGV-0111878_37	NCBIFam	TIGR02491.1	anaerobic ribonucleoside-triphosphate reductase activating protein	NA
UHGV-0111878_37	COG	COG0602	Organic radical activating enzyme NrdG/QueE	NA
UHGV-0111878_37	Structural annotation	PF13353, MF_00917, TIGR02491, COG0602	NA	NA
UHGV-0111878_38	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-0111878_38	PHROG	phrog_487	NrdD-like anaerobic ribonucleotide reductase large subunit	moron, auxiliary metabolic gene and host takeover
UHGV-0111878_38	UniRef90	UniRef90_UPI00118147A8	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0111878_38	eggNOG-mapper	1408312.JNJS01000001_gene1656	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0111878_38	Pfam	PF03477	ATP cone domain	ATP-cone
UHGV-0111878_38	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0111878_38	NCBIFam	TIGR02487.1	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0111878_38	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0111878_38	Structural annotation	PF13597, PF03477, MF_00440, NF006732, COG1328	NA	NA
UHGV-0111878_39	PHROG	phrog_236	nucleotide kinase	other
UHGV-0111878_39	UniRef90	UniRef90_A0A413EEF9	NA	NA
UHGV-0111878_39	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0111878_39	Pfam	PF11753	NA	DUF3310
UHGV-0111878_40	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0111878_40	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0111878_40	UniRef90	UniRef90_A0A517DVL0	SF3 helicase domain-containing protein	NA
UHGV-0111878_40	eggNOG-mapper	1304284.L21TH_2612	TIGRFAM phage plasmid primase, P4 family, C-terminal domain	NA
UHGV-0111878_40	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0111878_40	Pfam	PF19263	NA	DUF5906
UHGV-0111878_40	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0111878_40	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0111878_40	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0111878_41	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-0111878_41	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0111878_41	UniRef90	UniRef90_UPI00051696E6	DNA polymerase	NA
UHGV-0111878_41	eggNOG-mapper	1145276.T479_01580	DNA polymerase elongation subunit (Family B)	NA
UHGV-0111878_41	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0111878_41	Structural annotation	PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0111878_43	Pfam	PF18129	Xrn1 SH3-like domain	SH3_12
UHGV-0111878_44	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0111878_44	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0111878_44	UniRef90	UniRef90_A0A414AHN1	Hydrolase	NA
UHGV-0111878_44	eggNOG-mapper	428127.EUBDOL_01146	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0111878_44	Pfam	PF01966	HD domain	HD
UHGV-0111878_44	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0111878_44	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0111878_47	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0111878_47	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0111878_47	UniRef90	UniRef90_A0A1M6QMS3	Thymidylate synthase (FAD)	NA
UHGV-0111878_47	eggNOG-mapper	573370.DMR_30810	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0111878_47	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0111878_47	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0111878_47	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0111878_49	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111878_49	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0111878_49	eggNOG-mapper	1238184.CM001792_gene2549	NA	NA
UHGV-0111878_49	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0111878_49	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0111878_51	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0111878_51	UniRef90	UniRef90_A0Q0W3	Essential recombination function protein	NA
UHGV-0111878_51	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-0111878_51	Pfam	PF04404	ERF superfamily	ERF
UHGV-0111878_52	PHROG	phrog_5068	NA	unknown function
UHGV-0111878_53	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0111878_54	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0111878_54	UniRef90	UniRef90_A0A352A581	ERCC4 domain-containing protein	NA
UHGV-0111878_54	eggNOG-mapper	397291.C804_06336	ERCC4 domain	NA
UHGV-0111878_54	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0111878_54	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0111878_56	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0111878_56	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0111878_56	UniRef90	UniRef90_A0A373PTW4	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0111878_56	eggNOG-mapper	1120971.AUCA01000043_gene1174	sigma factor activity	NA
UHGV-0111878_56	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA