UHGV-0111922

Genome information

Genome length 45,501 bps

CDS count 69

Completeness 100.00% (complete)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111922
vOTU ID	vOTU-045662
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_250829
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.93
Jumbo phage	No

Genome content
Genome length	45,501 bps
GC content	40.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	89.82%
Average CDS length	595.04 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111922_1	PHROG	phrog_7964	NA	unknown function
UHGV-0111922_1	UniRef90	UniRef90_A0A373IMM1	Polymer-forming cytoskeletal protein (Fragment)	NA
UHGV-0111922_1	eggNOG-mapper	768710.DesyoDRAFT_1067	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0111922_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0111922_2	UniRef90	UniRef90_UPI000E51CB0A	GIY-YIG nuclease family protein	NA
UHGV-0111922_2	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0111922_2	COG	COG3860	NA	NA
UHGV-0111922_4	UniRef90	UniRef90_A0A373NQX7	XRE family transcriptional regulator	NA
UHGV-0111922_4	eggNOG-mapper	1163671.JAGI01000002_gene3923	NA	NA
UHGV-0111922_4	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0111922_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0111922_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0111922_5	UniRef90	UniRef90_A0A373NS05	XRE family transcriptional regulator	NA
UHGV-0111922_5	eggNOG-mapper	683837.lse_1630	Helix-turn-helix XRE-family like proteins	NA
UHGV-0111922_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0111922_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111922_5	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0111922_8	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0111922_8	eggNOG-mapper	180332.JTGN01000005_gene2952	domain, Protein	NA
UHGV-0111922_8	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0111922_8	COG	COG2382	Enterochelin esterase or related enzyme	NA
UHGV-0111922_9	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0111922_9	PHROG	phrog_95	integrase	integration and excision
UHGV-0111922_9	UniRef90	UniRef90_A0A2V2D7K6	Recombinase family protein	NA
UHGV-0111922_9	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0111922_9	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0111922_9	Pfam	PF07508	Recombinase	Recombinase
UHGV-0111922_9	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0111922_9	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0111922_9	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0111922_10	PHROG	phrog_38078	NA	unknown function
UHGV-0111922_10	UniRef90	UniRef90_A0A412SB50	SH3b domain-containing protein	NA
UHGV-0111922_10	eggNOG-mapper	476272.RUMHYD_01851	Putative peptidoglycan binding domain	NA
UHGV-0111922_10	Pfam	PF05257	CHAP domain	CHAP
UHGV-0111922_10	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0111922_10	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0111922_10	Structural annotation	PF08239, PF09953, NF040678, COG3942, COG4991	NA	NA
UHGV-0111922_12	Structural annotation	PF08931	NA	NA
UHGV-0111922_13	KOfam	K06237	COL4A; collagen type IV alpha	NA
UHGV-0111922_13	PHROG	phrog_6616	tail protein	tail
UHGV-0111922_13	UniRef90	UniRef90_A0A2V2D052	Peptidase S74 domain-containing protein	NA
UHGV-0111922_13	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0111922_13	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0111922_13	COG	COG4926	Phage-related protein	NA
UHGV-0111922_13	Structural annotation	PF05113, PF01835, PF03921, NF033848, COG3500	NA	NA
UHGV-0111922_14	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0111922_15	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0111922_15	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0111922_15	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0111922_15	COG	COG1511	NA	NA
UHGV-0111922_15	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0111922_16	PHROG	phrog_706	NA	unknown function
UHGV-0111922_16	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0111922_16	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0111922_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0111922_16	Structural annotation	PF06854	NA	NA
UHGV-0111922_17	PHROG	phrog_11299	NA	unknown function
UHGV-0111922_17	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0111922_17	Structural annotation	PF10666	NA	NA
UHGV-0111922_18	PHROG	phrog_3099	NA	unknown function
UHGV-0111922_18	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0111922_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0111922_19	PHROG	phrog_3266	tail completion	connector
UHGV-0111922_19	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0111922_19	Structural annotation	PF12691	NA	NA
UHGV-0111922_20	PHROG	phrog_3366	NA	unknown function
UHGV-0111922_20	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0111922_20	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0111922_21	PHROG	phrog_18218	NA	unknown function
UHGV-0111922_21	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0111922_21	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0111922_21	Structural annotation	PF06946	NA	NA
UHGV-0111922_22	PHROG	phrog_774	NA	unknown function
UHGV-0111922_22	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0111922_24	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0111922_24	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0111922_25	PHROG	phrog_544	major head protein	head and packaging
UHGV-0111922_25	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0111922_25	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0111922_25	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0111922_25	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0111922_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0111922_26	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0111922_26	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0111922_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0111922_27	PHROG	phrog_28802	NA	unknown function
UHGV-0111922_27	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0111922_28	PHROG	phrog_20016	NA	unknown function
UHGV-0111922_28	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0111922_28	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0111922_28	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0111922_29	PHROG	phrog_16490	NA	unknown function
UHGV-0111922_29	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0111922_30	PHROG	phrog_22984	NA	unknown function
UHGV-0111922_31	PHROG	phrog_21718	NA	unknown function
UHGV-0111922_31	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0111922_32	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0111922_32	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0111922_33	PHROG	phrog_3754	NA	unknown function
UHGV-0111922_33	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0111922_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0111922_34	UniRef90	UniRef90_UPI001C0EDE82	phage minor capsid protein	NA
UHGV-0111922_34	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0111922_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0111922_34	COG	COG2369	NA	NA
UHGV-0111922_34	Structural annotation	PF06152	NA	NA
UHGV-0111922_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0111922_35	UniRef90	UniRef90_UPI001C0ECC47	minor capsid protein	NA
UHGV-0111922_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0111922_35	Structural annotation	PF11114	NA	NA
UHGV-0111922_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-0111922_36	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0111922_36	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0111922_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0111922_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0111922_37	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0111922_37	UniRef90	UniRef90_A0A395X9V4	PBSX family phage terminase large subunit	NA
UHGV-0111922_37	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0111922_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0111922_37	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0111922_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111922_37	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0111922_38	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0111922_38	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0111922_38	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0111922_38	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0111922_38	Structural annotation	PF16677	NA	NA
UHGV-0111922_39	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0111922_39	AcrCatalog	cluster_11670	NA	NA
UHGV-0111922_45	PHROG	phrog_20593	NA	unknown function
UHGV-0111922_46	eggNOG-mapper	397291.C804_00971	NA	NA
UHGV-0111922_46	Structural annotation	PF02701, TIGR03655, COG3677	NA	NA
UHGV-0111922_47	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0111922_47	AcrCatalog	cluster_11670	NA	NA
UHGV-0111922_48	PHROG	phrog_15198	NA	unknown function
UHGV-0111922_48	UniRef90	UniRef90_UPI000E4C0B2A	NA	NA
UHGV-0111922_48	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0111922_48	Pfam	PF04448	NA	DUF551
UHGV-0111922_49	eggNOG-mapper	457412.RSAG_01159	NA	NA
UHGV-0111922_49	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0111922_50	Structural annotation	PF17888	NA	NA
UHGV-0111922_53	UniRef90	UniRef90_A0A373P4I4	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0111922_53	Pfam	PF12840	Helix-turn-helix domain	HTH_20
UHGV-0111922_53	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0111922_54	PHROG	phrog_17690	NA	unknown function
UHGV-0111922_54	eggNOG-mapper	476272.RUMHYD_03925	NA	NA
UHGV-0111922_56	KOfam	K15255	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	NA
UHGV-0111922_56	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-0111922_56	UniRef90	UniRef90_A0A2V2D011	AAA domain-containing protein	NA
UHGV-0111922_56	eggNOG-mapper	1121333.JMLH01000003_gene334	PIF1-like helicase	NA
UHGV-0111922_56	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-0111922_56	Pfam	PF05970	PIF1-like helicase	PIF1
UHGV-0111922_56	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0111922_56	Structural annotation	PF05970, PF16277, MF_03176, TIGR01448, COG0507	NA	NA
UHGV-0111922_57	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0111922_57	UniRef90	UniRef90_A0A3A6GQS5	NA	NA
UHGV-0111922_57	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0111922_57	Pfam	PF06048	NA	DUF927
UHGV-0111922_57	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0111922_57	COG	COG5519	NA	NA
UHGV-0111922_57	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0111922_58	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0111922_58	PHROG	phrog_11992	NA	unknown function
UHGV-0111922_58	UniRef90	UniRef90_A0A3A6GSV7	DNA primase	NA
UHGV-0111922_58	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0111922_58	PADLOC	drt-UG29	DRT	DRT
UHGV-0111922_58	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0111922_58	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0111922_58	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0111922_59	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0111922_59	UniRef90	UniRef90_R9KEE1	ERCC4 domain-containing protein	NA
UHGV-0111922_59	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-0111922_59	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0111922_59	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0111922_60	PHROG	phrog_18107	NA	unknown function
UHGV-0111922_60	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-0111922_60	Structural annotation	PF05037	NA	NA
UHGV-0111922_61	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0111922_61	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-0111922_61	eggNOG-mapper	397290.C810_05165	AAA domain	NA
UHGV-0111922_61	Pfam	PF13479	AAA domain	AAA_24
UHGV-0111922_61	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0111922_62	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0111922_63	Structural annotation	NF011879	NA	NA
UHGV-0111922_69	PHROG	phrog_20532	NA	unknown function
UHGV-0111922_69	eggNOG-mapper	665950.HMPREF1025_02555	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0111922_69	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA