UHGV-0111950

Genome information

Genome length 28,126 bps

CDS count 39

Completeness 92.84% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111950
vOTU ID	vOTU-010323
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_270514
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.84% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.84
Jumbo phage	No

Genome content
Genome length	28,126 bps
GC content	60.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	93.39%
Average CDS length	680.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111950_2	PHROG	phrog_9589	endolysin	lysis
UHGV-0111950_2	UniRef90	UniRef90_A0A352NEL1	SLH domain-containing protein	NA
UHGV-0111950_2	eggNOG-mapper	552398.HMPREF0866_03091	CHAP domain	NA
UHGV-0111950_2	Pfam	PF05257	CHAP domain	CHAP
UHGV-0111950_2	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0111950_2	Structural annotation	PF06940, TIGR02219	NA	NA
UHGV-0111950_3	PHROG	phrog_9428	NA	unknown function
UHGV-0111950_3	UniRef90	UniRef90_A0A6I2R426	Serine/threonine protein kinase	NA
UHGV-0111950_3	eggNOG-mapper	1226322.HMPREF1545_03573	NA	NA
UHGV-0111950_8	PHROG	phrog_3558	tail protein	tail
UHGV-0111950_8	UniRef90	UniRef90_A0A143Y6W7	Prophage_tail domain-containing protein	NA
UHGV-0111950_8	eggNOG-mapper	904144.AEJD01000006_gene571	Prophage endopeptidase tail	NA
UHGV-0111950_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0111950_8	COG	COG4926	Phage-related protein	NA
UHGV-0111950_9	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0111950_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0111950_10	PHROG	phrog_15002	NA	unknown function
UHGV-0111950_10	eggNOG-mapper	509191.AEDB02000020_gene3249	tail tape measure protein, TP901	NA
UHGV-0111950_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0111950_11	eggNOG-mapper	1219626.HMPREF1639_07460	NA	NA
UHGV-0111950_13	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0111950_13	eggNOG-mapper	1121423.JONT01000041_gene952	NA	NA
UHGV-0111950_13	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0111950_14	Structural annotation	PF05657	NA	NA
UHGV-0111950_15	UniRef90	UniRef90_A0A7C6PS93	HK97 gp10 family phage protein	NA
UHGV-0111950_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0111950_16	UniRef90	UniRef90_A0A1I2DTU2	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0111950_16	eggNOG-mapper	1235793.C809_04325	Phage head-tail joining protein	NA
UHGV-0111950_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0111950_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0111950_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0111950_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0111950_17	UniRef90	UniRef90_A0A3E2XWS7	Phage gp6-like head-tail connector protein	NA
UHGV-0111950_17	eggNOG-mapper	195103.CPF_1583	Phage gp6-like head-tail connector protein	NA
UHGV-0111950_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0111950_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0111950_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0111950_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0111950_18	UniRef90	UniRef90_A0A7X5KT24	Phage major capsid protein	NA
UHGV-0111950_18	eggNOG-mapper	742738.HMPREF9460_04071	phage major capsid protein, HK97 family	NA
UHGV-0111950_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0111950_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0111950_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0111950_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0111950_19	PHROG	phrog_16951	NA	unknown function
UHGV-0111950_19	UniRef90	UniRef90_R6LX42	PE-PGRS family protein	NA
UHGV-0111950_19	eggNOG-mapper	1378168.N510_00640	NA	NA
UHGV-0111950_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0111950_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0111950_20	UniRef90	UniRef90_A0A1Y3SK49	Phage portal protein	NA
UHGV-0111950_20	eggNOG-mapper	663278.Ethha_1836	Phage portal protein, HK97 family	NA
UHGV-0111950_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0111950_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0111950_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0111950_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0111950_21	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0111950_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0111950_22	UniRef90	UniRef90_A0A3D4EH51	Terminase large subunit	NA
UHGV-0111950_22	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-0111950_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0111950_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0111950_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0111950_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0111950_23	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0111950_23	UniRef90	UniRef90_UPI0013EF20CD	P27 family phage terminase small subunit	NA
UHGV-0111950_23	eggNOG-mapper	1501230.ET33_21205	Phage terminase, small subunit	NA
UHGV-0111950_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0111950_23	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0111950_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0111950_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0111950_24	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0111950_24	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0111950_27	PHROG	phrog_3136	NA	unknown function
UHGV-0111950_27	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0111950_27	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0111950_27	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0111950_27	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0111950_31	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0111950_31	PHROG	phrog_27290	NA	unknown function
UHGV-0111950_31	UniRef90	UniRef90_UPI000F6412EB	ParB/RepB/Spo0J family partition protein	NA
UHGV-0111950_31	eggNOG-mapper	1196322.A370_05736	Belongs to the ParB family	NA
UHGV-0111950_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0111950_31	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0111950_31	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0111950_31	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0111950_32	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0111950_32	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0111950_32	UniRef90	UniRef90_A0A3D1VAU9	ParA family protein	NA
UHGV-0111950_32	eggNOG-mapper	1226322.HMPREF1545_00097	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0111950_32	Pfam	PF13614	AAA domain	AAA_31
UHGV-0111950_32	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0111950_32	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0111950_33	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0111950_33	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0111950_33	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-0111950_33	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0111950_33	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0111950_33	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0111950_33	COG	COG0305	Replicative DNA helicase	NA
UHGV-0111950_33	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0111950_34	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0111950_34	UniRef90	UniRef90_UPI001369664B	helix-turn-helix domain-containing protein	NA
UHGV-0111950_34	eggNOG-mapper	931276.Cspa_c10030	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0111950_34	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0111950_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0111950_34	Structural annotation	PF02002, MF_01909, NF040939, COG5529	NA	NA
UHGV-0111950_38	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0111950_38	UniRef90	UniRef90_A0A4R4CYU2	Transcriptional regulator	NA
UHGV-0111950_38	eggNOG-mapper	1121342.AUCO01000012_gene1734	sequence-specific DNA binding	NA
UHGV-0111950_38	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0111950_38	Structural annotation	PF06892, NF040522, COG1476	NA	NA
UHGV-0111950_39	UniRef90	UniRef90_UPI0018975A18	XRE family transcriptional regulator	NA
UHGV-0111950_39	eggNOG-mapper	428125.CLOLEP_02737	NA	NA