UHGV-0111959

Genome information

Genome length 40,711 bps

CDS count 54

Completeness 99.90% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111959
vOTU ID	vOTU-063540
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_243566
BioSample	SAMEA3708722
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	87.43
Jumbo phage	No

Genome content
Genome length	40,711 bps
GC content	41.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	93.88%
Average CDS length	711.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111959_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0111959_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0111959_1	UniRef90	UniRef90_A6BEV3	Resolvase, N-terminal domain protein	NA
UHGV-0111959_1	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0111959_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0111959_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0111959_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0111959_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0111959_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0111959_2	PHROG	phrog_1847	NA	unknown function
UHGV-0111959_2	UniRef90	UniRef90_UPI001D04F48E	GIY-YIG nuclease family protein	NA
UHGV-0111959_2	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0111959_2	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0111959_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0111959_2	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0111959_3	eggNOG-mapper	1232430.CAVG010000061_gene603	NA	NA
UHGV-0111959_4	PHROG	phrog_87	metallo-protease	other
UHGV-0111959_4	UniRef90	UniRef90_A0A564SD80	Peptidase_M78 domain-containing protein	NA
UHGV-0111959_4	eggNOG-mapper	742765.HMPREF9457_02093	IrrE N-terminal-like domain	NA
UHGV-0111959_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0111959_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0111959_4	Structural annotation	PF06114	NA	NA
UHGV-0111959_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0111959_5	UniRef90	UniRef90_A0A564SCK3	HTH cro/C1-type domain-containing protein	NA
UHGV-0111959_5	eggNOG-mapper	411470.RUMGNA_03230	sequence-specific DNA binding	NA
UHGV-0111959_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0111959_5	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0111959_6	UniRef90	UniRef90_UPI001C00A264	NA	NA
UHGV-0111959_6	eggNOG-mapper	411470.RUMGNA_03231	NA	NA
UHGV-0111959_6	Pfam	PF05339	NA	DUF739
UHGV-0111959_6	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0111959_6	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0111959_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0111959_7	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0111959_7	UniRef90	UniRef90_A0A564SBT3	Phage antirepressor protein KilAC domain protein	NA
UHGV-0111959_7	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-0111959_7	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0111959_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0111959_7	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0111959_7	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0111959_8	eggNOG-mapper	1095750.HMPREF9970_1010	NA	NA
UHGV-0111959_9	PHROG	phrog_3240	NA	unknown function
UHGV-0111959_9	eggNOG-mapper	1158607.UAU_01711	NA	NA
UHGV-0111959_10	PHROG	phrog_4392	NA	unknown function
UHGV-0111959_10	UniRef90	UniRef90_UPI000E489044	membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-0111959_11	PHROG	phrog_3882	NA	unknown function
UHGV-0111959_14	PHROG	phrog_32342	NA	unknown function
UHGV-0111959_16	PHROG	phrog_26484	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0111959_16	UniRef90	UniRef90_A0A396KWB6	PC4 domain-containing protein	NA
UHGV-0111959_16	eggNOG-mapper	1260356.D920_01530	Transcriptional Coactivator p15 (PC4)	NA
UHGV-0111959_16	Pfam	PF02229	Transcriptional Coactivator p15 (PC4)	PC4
UHGV-0111959_16	COG	COG4443	NA	NA
UHGV-0111959_16	Structural annotation	COG4443	NA	NA
UHGV-0111959_17	PHROG	phrog_22695	NA	unknown function
UHGV-0111959_17	eggNOG-mapper	1235799.C818_04196	NA	NA
UHGV-0111959_18	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0111959_18	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111959_18	UniRef90	UniRef90_A0A396L944	NA	NA
UHGV-0111959_18	eggNOG-mapper	1235799.C818_04197	NA	NA
UHGV-0111959_18	Pfam	PF10926	NA	DUF2800
UHGV-0111959_18	COG	COG2887	RecB family exonuclease	NA
UHGV-0111959_18	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0111959_19	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0111959_19	UniRef90	UniRef90_A0A396KWH9	NA	NA
UHGV-0111959_19	eggNOG-mapper	1235799.C818_04198	NA	NA
UHGV-0111959_19	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0111959_19	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0111959_20	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0111959_20	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0111959_20	UniRef90	UniRef90_A0A396KYP4	POLAc domain-containing protein	NA
UHGV-0111959_20	eggNOG-mapper	1235799.C818_04199	DNA polymerase A domain	NA
UHGV-0111959_20	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0111959_20	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0111959_20	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0111959_21	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0111959_21	UniRef90	UniRef90_A0A396L1U3	Virulence-associated protein E	NA
UHGV-0111959_21	eggNOG-mapper	1235799.C818_04200	Virulence-associated protein E	NA
UHGV-0111959_21	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0111959_21	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0111959_21	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0111959_22	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111959_22	UniRef90	UniRef90_A0A396L122	VRR-NUC domain-containing protein	NA
UHGV-0111959_22	eggNOG-mapper	1000569.HMPREF1040_0204	VRR_NUC	NA
UHGV-0111959_22	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0111959_22	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-0111959_23	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0111959_23	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0111959_23	UniRef90	UniRef90_A0A396L8U5	ATP-dependent helicase	NA
UHGV-0111959_23	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-0111959_23	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0111959_23	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0111959_23	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0111959_23	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0111959_23	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0111959_24	Structural annotation	MF_00773	NA	NA
UHGV-0111959_25	PHROG	phrog_26445	NA	unknown function
UHGV-0111959_25	UniRef90	UniRef90_A0A412MF67	DNA-binding response regulator	NA
UHGV-0111959_25	eggNOG-mapper	411461.DORFOR_00012	NA	NA
UHGV-0111959_25	Structural annotation	PF13384, MF_00475, TIGR02531, COG1710	NA	NA
UHGV-0111959_26	UniRef90	UniRef90_UPI001EE0C335	NA	NA
UHGV-0111959_26	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0111959_26	Pfam	PF04448	NA	DUF551
UHGV-0111959_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0111959_28	UniRef90	UniRef90_A0A414S361	RNA polymerase subunit sigma-70	NA
UHGV-0111959_28	eggNOG-mapper	1232452.BAIB02000007_gene1634	NA	NA
UHGV-0111959_28	Structural annotation	PF02996	NA	NA
UHGV-0111959_29	PHROG	phrog_11520	NA	unknown function
UHGV-0111959_29	eggNOG-mapper	1235792.C808_02815	NA	NA
UHGV-0111959_29	Structural annotation	PF14337	NA	NA
UHGV-0111959_30	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0111959_30	UniRef90	UniRef90_UPI001C027893	phage terminase small subunit	NA
UHGV-0111959_30	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0111959_30	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0111959_30	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0111959_30	COG	COG5484	NA	NA
UHGV-0111959_30	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0111959_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0111959_32	PHROG	phrog_10250	NA	unknown function
UHGV-0111959_32	UniRef90	UniRef90_UPI001C023397	PBSX family phage terminase large subunit	NA
UHGV-0111959_32	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0111959_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0111959_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0111959_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0111959_32	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0111959_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0111959_33	UniRef90	UniRef90_UPI001A9B67CD	phage portal protein	NA
UHGV-0111959_33	eggNOG-mapper	1232453.BAIF02000011_gene3353	Phage portal protein, SPP1 family	NA
UHGV-0111959_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0111959_33	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0111959_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0111959_34	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0111959_34	UniRef90	UniRef90_UPI00191DC8DC	minor capsid protein	NA
UHGV-0111959_34	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0111959_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0111959_34	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0111959_34	COG	COG2369	NA	NA
UHGV-0111959_34	Structural annotation	PF04233, PF04002, TIGR01641, NF000642, COG2003, COG2369	NA	NA
UHGV-0111959_37	PHROG	phrog_3675	NA	unknown function
UHGV-0111959_37	UniRef90	UniRef90_UPI001C027742	YjcQ family protein	NA
UHGV-0111959_37	eggNOG-mapper	1118055.CAGU01000029_gene13	YjcQ protein	NA
UHGV-0111959_37	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0111959_37	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0111959_38	KOfam	K07584	NA	NA
UHGV-0111959_38	PHROG	phrog_4478	peptidase	other
UHGV-0111959_38	UniRef90	UniRef90_UPI00156DEF22	ribosomal-processing cysteine protease Prp	NA
UHGV-0111959_38	eggNOG-mapper	1232453.BAIF02000011_gene3357	Cysteine protease Prp	NA
UHGV-0111959_38	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0111959_38	COG	COG2868	NA	NA
UHGV-0111959_38	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0111959_39	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0111959_39	UniRef90	UniRef90_UPI001D0541EB	NA	NA
UHGV-0111959_39	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-0111959_39	Pfam	PF14265	NA	DUF4355
UHGV-0111959_39	Structural annotation	PF14265	NA	NA
UHGV-0111959_40	PHROG	phrog_544	major head protein	head and packaging
UHGV-0111959_40	UniRef90	UniRef90_A0A173ZE35	S-l_SbsC_C domain-containing protein	NA
UHGV-0111959_40	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0111959_40	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0111959_40	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0111959_41	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-0111959_41	UniRef90	UniRef90_UPI00189C3058	Rho termination protein	NA
UHGV-0111959_41	eggNOG-mapper	279808.SH2353	Rho termination factor, N-terminal domain	NA
UHGV-0111959_42	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0111959_42	UniRef90	UniRef90_A0A173ZES1	Phage gp6-like head-tail connector protein	NA
UHGV-0111959_42	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-0111959_42	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0111959_42	Structural annotation	PF05135	NA	NA
UHGV-0111959_43	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0111959_43	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0111959_43	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0111959_44	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0111959_44	UniRef90	UniRef90_A0A173YJM6	Phage protein, HK97 gp10 family	NA
UHGV-0111959_44	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0111959_44	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0111959_44	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0111959_44	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0111959_45	PHROG	phrog_176	tail terminator	connector
UHGV-0111959_45	UniRef90	UniRef90_UPI001D04E689	NA	NA
UHGV-0111959_45	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-0111959_45	Structural annotation	PF11367	NA	NA
UHGV-0111959_46	PHROG	phrog_238	major tail protein	tail
UHGV-0111959_46	UniRef90	UniRef90_A0A173YN47	Phage major tail protein, TP901-1 family	NA
UHGV-0111959_46	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-0111959_46	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0111959_46	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0111959_46	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0111959_47	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0111959_47	UniRef90	UniRef90_A0A315ZUX3	Phage tail assembly chaperone protein, TAC	NA
UHGV-0111959_47	eggNOG-mapper	1158610.UC3_03187	Phage tail assembly chaperone protein, TAC	NA
UHGV-0111959_47	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0111959_47	Structural annotation	PF12363	NA	NA
UHGV-0111959_48	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0111959_48	UniRef90	UniRef90_F0YWR6	NA	NA
UHGV-0111959_48	eggNOG-mapper	556261.HMPREF0240_01278	NA	NA
UHGV-0111959_49	PHROG	phrog_1204	tail protein	tail
UHGV-0111959_49	UniRef90	UniRef90_UPI0006B2229E	tape measure protein	NA
UHGV-0111959_49	eggNOG-mapper	1235798.C817_03468	nuclear chromosome segregation	NA
UHGV-0111959_49	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0111959_49	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0111959_49	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0111959_49	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0111959_50	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0111959_50	UniRef90	UniRef90_UPI00156D6BD7	phage tail family protein	NA
UHGV-0111959_50	eggNOG-mapper	1235796.C815_00909	Phage tail protein	NA
UHGV-0111959_50	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0111959_50	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0111959_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-0111959_50	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0111959_51	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0111959_51	PHROG	phrog_9478	minor tail protein	tail
UHGV-0111959_51	UniRef90	UniRef90_UPI001C0193FC	phage tail protein	NA
UHGV-0111959_51	eggNOG-mapper	543734.LCABL_13420	cellulase activity	NA
UHGV-0111959_51	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0111959_51	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0111959_51	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0111959_51	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0111959_51	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0111959_51	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0111959_53	PHROG	phrog_1009	NA	unknown function
UHGV-0111959_53	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-0111959_53	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0111959_54	PHROG	phrog_1129	holin	lysis
UHGV-0111959_54	UniRef90	UniRef90_UPI001F15FE24	phage holin family protein	NA
UHGV-0111959_54	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0111959_54	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0111959_54	Structural annotation	PF06946	NA	NA