UHGV-0111964

Genome information

Genome length 30,356 bps

CDS count 47

Completeness 99.90% (high-quality)

geNomad score 0.9710

Prediction confidence Confident

Genome information
Genome ID	UHGV-0111964
vOTU ID	vOTU-075700
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_252195
BioSample	SAMEA3708785
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	24
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9710
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.37
Jumbo phage	No

Genome content
Genome length	30,356 bps
GC content	52.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.27%
Average CDS length	606.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0111964_1	eggNOG-mapper	428125.CLOLEP_02045	NA	NA
UHGV-0111964_1	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0111964_2	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0111964_2	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-0111964_2	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0111964_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0111964_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0111964_2	COG	COG4926	Phage-related protein	NA
UHGV-0111964_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0111964_3	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0111964_3	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0111964_3	UniRef90	UniRef90_A0A316NM27	Toxin-antitoxin system, toxin component, HicA family protein	NA
UHGV-0111964_3	eggNOG-mapper	411460.RUMTOR_02081	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0111964_3	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0111964_3	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0111964_3	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0111964_4	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0111964_4	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0111964_4	UniRef90	UniRef90_A0A316NLB7	HicB family protein	NA
UHGV-0111964_4	eggNOG-mapper	1122925.KB895394_gene1703	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0111964_4	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0111964_4	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0111964_4	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0111964_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0111964_5	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0111964_5	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0111964_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-0111964_5	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0111964_6	PHROG	phrog_23464	NA	unknown function
UHGV-0111964_6	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-0111964_6	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0111964_6	COG	COG5412	Phage-related protein	NA
UHGV-0111964_6	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0111964_7	PHROG	phrog_3033	NA	unknown function
UHGV-0111964_7	eggNOG-mapper	1280671.AUJH01000012_gene3142	NA	NA
UHGV-0111964_8	PHROG	phrog_709	NA	unknown function
UHGV-0111964_8	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-0111964_8	Structural annotation	PF11836	NA	NA
UHGV-0111964_9	PHROG	phrog_88	major tail protein	tail
UHGV-0111964_9	UniRef90	UniRef90_A0A1C6H6F0	Phage major tail protein, phi13 family	NA
UHGV-0111964_9	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-0111964_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0111964_9	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0111964_10	PHROG	phrog_78	tail terminator	connector
UHGV-0111964_10	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-0111964_10	eggNOG-mapper	1226322.HMPREF1545_00120	NA	NA
UHGV-0111964_10	Structural annotation	PF20765	NA	NA
UHGV-0111964_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0111964_11	UniRef90	UniRef90_A0A8J6PH82	HK97 gp10 family phage protein	NA
UHGV-0111964_11	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0111964_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0111964_11	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0111964_12	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0111964_12	UniRef90	UniRef90_A0A8J6P6R3	Phage head-tail adapter protein	NA
UHGV-0111964_12	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-0111964_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0111964_13	PHROG	phrog_5223	neck protein	connector
UHGV-0111964_13	UniRef90	UniRef90_UPI00073F29ED	head-tail connector protein	NA
UHGV-0111964_13	eggNOG-mapper	411471.SUBVAR_05853	NA	NA
UHGV-0111964_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0111964_13	Structural annotation	TIGR01560	NA	NA
UHGV-0111964_14	eggNOG-mapper	476272.RUMHYD_02855	NA	NA
UHGV-0111964_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0111964_15	UniRef90	UniRef90_UPI00073E62C9	phage major capsid protein	NA
UHGV-0111964_15	eggNOG-mapper	626523.GCWU000342_01025	Phage capsid family	NA
UHGV-0111964_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0111964_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0111964_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0111964_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0111964_16	KOfam	K06904	NA	NA
UHGV-0111964_16	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0111964_16	UniRef90	UniRef90_A0A1C5W530	Phage prohead protease, HK97 family	NA
UHGV-0111964_16	eggNOG-mapper	411471.SUBVAR_05851	Caudovirus prohead serine protease	NA
UHGV-0111964_16	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0111964_16	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0111964_16	COG	COG3740	Phage head maturation protease	NA
UHGV-0111964_16	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0111964_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0111964_17	UniRef90	UniRef90_A0A8J6PFS2	Phage portal protein	NA
UHGV-0111964_17	eggNOG-mapper	411471.SUBVAR_05850	Phage portal protein	NA
UHGV-0111964_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0111964_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0111964_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0111964_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0111964_18	UniRef90	UniRef90_A0A8J6TY49	Terminase large subunit	NA
UHGV-0111964_18	eggNOG-mapper	411471.SUBVAR_05848	large subunit	NA
UHGV-0111964_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0111964_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0111964_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0111964_18	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0111964_19	PHROG	phrog_1066	NA	unknown function
UHGV-0111964_19	eggNOG-mapper	397290.C810_00417	NA	NA
UHGV-0111964_19	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0111964_20	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111964_20	UniRef90	UniRef90_A0A8J6TW61	HNH endonuclease	NA
UHGV-0111964_20	eggNOG-mapper	887929.HMP0721_1270	HNH nucleases	NA
UHGV-0111964_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0111964_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0111964_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0111964_21	UniRef90	UniRef90_R5GVZ3	Sigma70_r4 domain-containing protein	NA
UHGV-0111964_21	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-0111964_21	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0111964_21	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0111964_23	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0111964_23	UniRef90	UniRef90_A0A0K2CZB3	Acetyltransferase	NA
UHGV-0111964_23	eggNOG-mapper	1121468.AUBR01000007_gene285	COG NOG12663 non supervised orthologous group	NA
UHGV-0111964_23	Structural annotation	PF11039, MF_02210, NF040503, COG1247	NA	NA
UHGV-0111964_24	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0111964_24	UniRef90	UniRef90_A0A174V495	C-5 cytosine-specific DNA methylase	NA
UHGV-0111964_24	eggNOG-mapper	1226322.HMPREF1545_03521	C-5 cytosine-specific DNA methylase	NA
UHGV-0111964_24	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0111964_25	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0111964_25	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0111964_25	UniRef90	UniRef90_A0A6N9PVN9	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0111964_25	eggNOG-mapper	742733.HMPREF9469_00225	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0111964_25	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0111964_25	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0111964_25	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0111964_25	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0111964_26	Structural annotation	PF17399	NA	NA
UHGV-0111964_27	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0111964_27	UniRef90	UniRef90_UPI0005358453	NA	NA
UHGV-0111964_27	eggNOG-mapper	1458856.A0A059T699_9CAUD	NA	NA
UHGV-0111964_27	Pfam	PF12961	NA	DUF3850
UHGV-0111964_27	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0111964_28	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111964_28	UniRef90	UniRef90_A0A0H3N242	Phage-related protein	NA
UHGV-0111964_28	eggNOG-mapper	1540092.A0A0A0RSY9_9CAUD	transferase activity, transferring alkyl or aryl (other than methyl) groups	NA
UHGV-0111964_28	Structural annotation	PF17375	NA	NA
UHGV-0111964_30	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0111964_30	eggNOG-mapper	742740.HMPREF9474_03491	NA	NA
UHGV-0111964_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0111964_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0111964_31	UniRef90	UniRef90_J1H3J1	Single-stranded DNA-binding protein	NA
UHGV-0111964_31	eggNOG-mapper	1105031.HMPREF1141_2832	Single-stranded DNA-binding protein	NA
UHGV-0111964_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0111964_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0111964_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0111964_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0111964_31	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0111964_33	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0111964_33	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0111964_33	UniRef90	UniRef90_A0A1Y4EVJ1	DNA helicase	NA
UHGV-0111964_33	eggNOG-mapper	10678.O80281_BPP1	DNA helicase activity	NA
UHGV-0111964_33	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0111964_33	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0111964_33	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0111964_34	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0111964_34	eggNOG-mapper	632292.Calhy_0413	NA	NA
UHGV-0111964_34	Structural annotation	PF20024, NF041413, COG0735	NA	NA
UHGV-0111964_35	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0111964_35	UniRef90	UniRef90_A0A498CPV0	HNH endonuclease	NA
UHGV-0111964_35	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0111964_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0111964_36	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0111964_36	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0111964_36	Structural annotation	PF05772	NA	NA
UHGV-0111964_37	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0111964_37	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-0111964_37	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0111964_37	Pfam	PF06378	NA	DUF1071
UHGV-0111964_37	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0111964_41	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0111964_43	eggNOG-mapper	661087.HMPREF1008_01721	single-stranded-DNA-specific exonuclease RecJ	NA
UHGV-0111964_43	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0111964_43	COG	COG0514	Superfamily II DNA helicase RecQ	NA
UHGV-0111964_44	UniRef90	UniRef90_UPI000C7663AC	XRE family transcriptional regulator	NA
UHGV-0111964_44	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0111964_44	Structural annotation	TIGR03070	NA	NA
UHGV-0111964_45	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0111964_45	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0111964_45	UniRef90	UniRef90_A7VTE0	LexA family transcriptional regulator	NA
UHGV-0111964_45	eggNOG-mapper	428125.CLOLEP_01832	DNA-binding helix-turn-helix protein	NA
UHGV-0111964_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0111964_45	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0111964_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0111964_45	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0111964_46	PHROG	phrog_5783	NA	unknown function
UHGV-0111964_46	UniRef90	UniRef90_A0A1G5F6B7	NYN domain-containing protein	NA
UHGV-0111964_46	eggNOG-mapper	665956.HMPREF1032_03590	NYN domain	NA
UHGV-0111964_46	Pfam	PF01936	NYN domain	NYN
UHGV-0111964_46	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0111964_46	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0111964_47	KOfam	K14059	int; integrase	NA
UHGV-0111964_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0111964_47	UniRef90	UniRef90_A0A143ZX40	Tyrosine recombinase XerC	NA
UHGV-0111964_47	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0111964_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0111964_47	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0111964_47	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA