UHGV-0112063

Genome information

Genome length 18,228 bps

CDS count 23

Completeness 99.90% (high-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112063
vOTU ID	vOTU-067576
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_248282
BioSample	SAMEA3708809
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.41
Jumbo phage	No

Genome content
Genome length	18,228 bps
GC content	52.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	23
CDS density	93.95%
Average CDS length	744.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112063_5	Structural annotation	PF11680	NA	NA
UHGV-0112063_7	Structural annotation	PF17548, MF_00273	NA	NA
UHGV-0112063_8	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0112063_8	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0112063_8	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0112063_8	Structural annotation	PF17427	NA	NA
UHGV-0112063_9	UniRef90	UniRef90_A0A1L5L4S0	Nodulation protein S (NodS) (Fragment)	NA
UHGV-0112063_10	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0112063_10	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0112063_10	UniRef90	UniRef90_A0A1L5L4Q6	DNA-directed DNA polymerase	NA
UHGV-0112063_10	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0112063_10	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0112063_10	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0112063_12	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0112063_12	UniRef90	UniRef90_A0A6G5YM92	BIG2 domain-containing protein	NA
UHGV-0112063_12	eggNOG-mapper	338473.A6XAD5_9CAUD	viral capsid	NA
UHGV-0112063_12	Structural annotation	PF02368, PF19821, PF18957, MF_04119, NF033394, COG1659, COG5492	NA	NA
UHGV-0112063_13	PHROG	phrog_2248	tail protein	tail
UHGV-0112063_13	UniRef90	UniRef90_A0A6G5YMA6	Caud_tail_N domain-containing protein	NA
UHGV-0112063_13	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0112063_13	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0112063_13	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0112063_13	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0112063_14	PHROG	phrog_2038	upper collar connector	connector
UHGV-0112063_14	UniRef90	UniRef90_A0A3G3LXU8	Upper collar protein	NA
UHGV-0112063_14	eggNOG-mapper	1128071.G9J3I3_9CAUD	Phage Connector (GP10)	NA
UHGV-0112063_14	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0112063_14	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0112063_15	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0112063_15	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0112063_18	Structural annotation	NF008575	NA	NA
UHGV-0112063_19	PHROG	phrog_8781	endolysin	lysis
UHGV-0112063_19	eggNOG-mapper	552396.HMPREF0863_01651	lysozyme activity	NA
UHGV-0112063_19	Pfam	PF05257	CHAP domain	CHAP
UHGV-0112063_19	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0112063_19	Structural annotation	TIGR02219	NA	NA
UHGV-0112063_20	PHROG	phrog_2150	terminase	head and packaging
UHGV-0112063_20	UniRef90	UniRef90_UPI0010FDCA94	phage DNA encapsidation protein	NA
UHGV-0112063_20	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0112063_20	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0112063_20	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0112063_21	PHROG	phrog_199	holin	lysis
UHGV-0112063_21	UniRef90	UniRef90_UPI00123224AD	phage holin family protein	NA
UHGV-0112063_21	eggNOG-mapper	1437610.BREU_1264	Bacteriophage holin family	NA
UHGV-0112063_21	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0112063_21	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0112063_21	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0112063_22	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0112063_22	PHROG	phrog_19265	NA	unknown function
UHGV-0112063_22	UniRef90	UniRef90_A0A4R0VLM2	Amidase	NA
UHGV-0112063_22	eggNOG-mapper	566552.BIFCAT_00299	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0112063_22	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0112063_22	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0112063_22	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA