UHGV-0112131

Genome information

Genome length 46,175 bps

CDS count 77

Completeness 100.00% (complete)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112131
vOTU ID	vOTU-045668
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_248861
BioSample	SAMEA3708846
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.29
Jumbo phage	No

Genome content
Genome length	46,175 bps
GC content	36.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	89.77%
Average CDS length	540.70 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112131_1	KOfam	K14059	int; integrase	NA
UHGV-0112131_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0112131_1	UniRef90	UniRef90_A0A173TZS3	Integrase	NA
UHGV-0112131_1	eggNOG-mapper	1235798.C817_05483	Phage integrase family	NA
UHGV-0112131_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0112131_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0112131_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0112131_2	COG	COG4640	NA	NA
UHGV-0112131_3	PHROG	phrog_87	metallo-protease	other
UHGV-0112131_3	UniRef90	UniRef90_A0A417V5H7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0112131_3	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0112131_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0112131_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0112131_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0112131_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0112131_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0112131_4	UniRef90	UniRef90_A0A417V5F8	XRE family transcriptional regulator	NA
UHGV-0112131_4	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0112131_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112131_4	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0112131_4	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0112131_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0112131_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0112131_5	UniRef90	UniRef90_A0A7C6JZZ8	Helix-turn-helix transcriptional regulator	NA
UHGV-0112131_5	eggNOG-mapper	1304866.K413DRAFT_3003	addiction module antidote protein HigA	NA
UHGV-0112131_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112131_5	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0112131_5	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0112131_7	AcrCatalog	cluster_17974	NA	NA
UHGV-0112131_9	PHROG	phrog_36464	NA	unknown function
UHGV-0112131_9	eggNOG-mapper	1235798.C817_05488	NA	NA
UHGV-0112131_9	Structural annotation	PF09035	NA	NA
UHGV-0112131_13	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0112131_13	UniRef90	UniRef90_UPI00156F9B5D	siphovirus Gp157 family protein	NA
UHGV-0112131_13	eggNOG-mapper	431943.CKL_3298	Siphovirus Gp157	NA
UHGV-0112131_13	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0112131_13	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0112131_14	PHROG	phrog_14970	NA	unknown function
UHGV-0112131_14	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0112131_14	eggNOG-mapper	697329.Rumal_1121	double-strand break repair protein	NA
UHGV-0112131_14	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0112131_14	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0112131_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0112131_15	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0112131_15	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0112131_16	PHROG	phrog_7566	NA	unknown function
UHGV-0112131_16	UniRef90	UniRef90_A0A417V5I7	Phosphoenolpyruvate carboxykinase	NA
UHGV-0112131_16	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0112131_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0112131_17	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0112131_17	UniRef90	UniRef90_A0A417V5H0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0112131_17	eggNOG-mapper	1158604.I591_01786	Endodeoxyribonuclease RusA	NA
UHGV-0112131_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0112131_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0112131_17	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0112131_18	PHROG	phrog_16304	NA	unknown function
UHGV-0112131_18	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0112131_18	Structural annotation	PF10771, MF_01177, TIGR01610, COG5529	NA	NA
UHGV-0112131_19	PHROG	phrog_1123	NA	unknown function
UHGV-0112131_19	UniRef90	UniRef90_A0A6N9P096	DNA gyrase	NA
UHGV-0112131_19	eggNOG-mapper	1308863.U5J9F3_9CAUD	NA	NA
UHGV-0112131_19	Structural annotation	PF03551, MF_01804, TIGR03433, COG1695	NA	NA
UHGV-0112131_20	UniRef90	UniRef90_UPI001BA881F1	transposase	NA
UHGV-0112131_20	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0112131_20	Structural annotation	PF13518, PF13613, NF040595, COG3415	NA	NA
UHGV-0112131_21	PHROG	phrog_4433	NA	unknown function
UHGV-0112131_21	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0112131_21	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0112131_24	eggNOG-mapper	1121871.AUAT01000002_gene1365	NA	NA
UHGV-0112131_25	PHROG	phrog_31463	NA	unknown function
UHGV-0112131_25	UniRef90	UniRef90_UPI001160B515	LemA family protein	NA
UHGV-0112131_31	Structural annotation	PF14084	NA	NA
UHGV-0112131_33	Structural annotation	PF14844	NA	NA
UHGV-0112131_35	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-0112131_37	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0112131_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0112131_37	UniRef90	UniRef90_A0A173U128	Transcriptional regulator, y4mF family	NA
UHGV-0112131_37	eggNOG-mapper	1235790.C805_00648	Helix-turn-helix XRE-family like proteins	NA
UHGV-0112131_37	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0112131_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112131_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0112131_39	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112131_39	UniRef90	UniRef90_A0A1C6HBF7	AP2 domain	NA
UHGV-0112131_39	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-0112131_39	Pfam	PF00847	AP2 domain	AP2
UHGV-0112131_39	Structural annotation	PF00847, MF_01580, NF007510	NA	NA
UHGV-0112131_43	UniRef90	UniRef90_A0A173TX46	HTH cro/C1-type domain-containing protein	NA
UHGV-0112131_43	eggNOG-mapper	397291.C804_01058	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0112131_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0112131_43	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0112131_45	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112131_45	UniRef90	UniRef90_A0A173U068	AP2 domain	NA
UHGV-0112131_45	eggNOG-mapper	169963.lmo2276	NA	NA
UHGV-0112131_45	AcrCatalog	cluster_10901	NA	NA
UHGV-0112131_45	Pfam	PF00847	AP2 domain	AP2
UHGV-0112131_45	Structural annotation	PF00847	NA	NA
UHGV-0112131_46	PHROG	phrog_33130	NA	unknown function
UHGV-0112131_46	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0112131_47	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0112131_47	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0112131_47	UniRef90	UniRef90_UPI00156D9D24	PBSX family phage terminase large subunit	NA
UHGV-0112131_47	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0112131_47	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0112131_47	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0112131_47	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0112131_47	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0112131_47	COG	COG1783	Phage terminase large subunit	NA
UHGV-0112131_47	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0112131_49	PHROG	phrog_533	portal protein	head and packaging
UHGV-0112131_49	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0112131_49	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0112131_49	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0112131_51	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0112131_51	UniRef90	UniRef90_A0A173TY40	Phage minor capsid protein 2	NA
UHGV-0112131_51	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0112131_51	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0112131_51	COG	COG2369	NA	NA
UHGV-0112131_51	Structural annotation	PF06152	NA	NA
UHGV-0112131_52	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0112131_52	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0112131_53	PHROG	phrog_918	NA	unknown function
UHGV-0112131_53	UniRef90	UniRef90_UPI00195F2652	NA	NA
UHGV-0112131_53	eggNOG-mapper	226185.EF_1459	NA	NA
UHGV-0112131_53	Pfam	PF19791	NA	DUF6275
UHGV-0112131_53	Structural annotation	PF19791	NA	NA
UHGV-0112131_54	PHROG	phrog_21718	NA	unknown function
UHGV-0112131_54	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0112131_56	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0112131_57	PHROG	phrog_20016	NA	unknown function
UHGV-0112131_57	UniRef90	UniRef90_A0A316MV88	BclA_C domain-containing protein	NA
UHGV-0112131_57	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0112131_57	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0112131_58	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0112131_60	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0112131_60	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0112131_60	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0112131_61	PHROG	phrog_247	major head protein	head and packaging
UHGV-0112131_61	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0112131_61	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0112131_61	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0112131_62	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0112131_62	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0112131_63	PHROG	phrog_3366	NA	unknown function
UHGV-0112131_63	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0112131_63	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0112131_64	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0112131_64	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0112131_64	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0112131_64	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0112131_64	Structural annotation	PF11114	NA	NA
UHGV-0112131_65	PHROG	phrog_3266	tail completion	connector
UHGV-0112131_65	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0112131_65	Structural annotation	PF12691	NA	NA
UHGV-0112131_66	PHROG	phrog_3099	NA	unknown function
UHGV-0112131_66	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0112131_66	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0112131_67	PHROG	phrog_11299	NA	unknown function
UHGV-0112131_67	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0112131_67	Structural annotation	PF10666	NA	NA
UHGV-0112131_68	PHROG	phrog_706	NA	unknown function
UHGV-0112131_68	UniRef90	UniRef90_A0A173TZF2	Bacteriophage Gp15 protein	NA
UHGV-0112131_68	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0112131_68	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0112131_68	Structural annotation	PF06854	NA	NA
UHGV-0112131_69	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0112131_69	UniRef90	UniRef90_A0A173TXH9	Phage-related protein	NA
UHGV-0112131_69	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0112131_69	COG	COG5412	Phage-related protein	NA
UHGV-0112131_69	Structural annotation	PF11172	NA	NA
UHGV-0112131_70	PHROG	phrog_1194	NA	unknown function
UHGV-0112131_70	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0112131_71	PHROG	phrog_6616	tail protein	tail
UHGV-0112131_71	UniRef90	UniRef90_A0A173TV73	Collagen triple helix repeat (20 copies)	NA
UHGV-0112131_71	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0112131_71	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0112131_72	PHROG	phrog_18444	NA	unknown function
UHGV-0112131_75	PHROG	phrog_26878	virion structural protein	head and packaging
UHGV-0112131_75	UniRef90	UniRef90_UPI00047CC9FD	NA	NA
UHGV-0112131_76	PHROG	phrog_962	holin	lysis
UHGV-0112131_76	UniRef90	UniRef90_UPI001BA7CE6E	phage holin	NA
UHGV-0112131_76	eggNOG-mapper	1120998.AUFC01000022_gene406	Bacteriophage holin	NA
UHGV-0112131_76	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0112131_76	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0112131_76	COG	COG5546	NA	NA
UHGV-0112131_76	Structural annotation	PF04531, TIGR01598, COG5546	NA	NA
UHGV-0112131_77	PHROG	phrog_9589	endolysin	lysis
UHGV-0112131_77	UniRef90	UniRef90_A0A173TVL9	Peptidase C51 domain-containing protein	NA
UHGV-0112131_77	eggNOG-mapper	1123075.AUDP01000020_gene1533	pathogenesis	NA
UHGV-0112131_77	Pfam	PF05257	CHAP domain	CHAP
UHGV-0112131_77	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0112131_77	COG	COG3942	Surface antigen	NA
UHGV-0112131_77	Structural annotation	PF01471, PF06940, TIGR02594, NF038080, COG3942	NA	NA