UHGV-0112154

Genome information

Genome length 57,230 bps

CDS count 101

Completeness 100.00% (complete)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112154
vOTU ID	vOTU-001663
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_267877
BioSample	SAMEA3879560
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.68
Jumbo phage	No

Genome content
Genome length	57,230 bps
GC content	40.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	101
CDS density	88.16%
Average CDS length	502.96 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112154_1	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0112154_2	PHROG	phrog_909	major head protein	head and packaging
UHGV-0112154_2	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0112154_3	PHROG	phrog_29	major head protein	head and packaging
UHGV-0112154_3	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0112154_3	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0112154_3	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0112154_3	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0112154_4	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0112154_4	Structural annotation	PF21169	NA	NA
UHGV-0112154_5	PHROG	phrog_774	NA	unknown function
UHGV-0112154_5	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0112154_6	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0112154_7	PHROG	phrog_4105	NA	unknown function
UHGV-0112154_7	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0112154_8	PHROG	phrog_443	holin	lysis
UHGV-0112154_8	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0112154_8	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0112154_8	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0112154_8	Structural annotation	PF16945	NA	NA
UHGV-0112154_9	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0112154_10	PHROG	phrog_1233	NA	unknown function
UHGV-0112154_10	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0112154_10	eggNOG-mapper	1232449.BAHV02000018_gene1535	NA	NA
UHGV-0112154_11	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0112154_11	AcrCatalog	cluster_24841	NA	NA
UHGV-0112154_12	Structural annotation	PF05657	NA	NA
UHGV-0112154_13	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0112154_13	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0112154_16	PHROG	phrog_14030	NA	unknown function
UHGV-0112154_16	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0112154_16	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0112154_16	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0112154_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0112154_17	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0112154_17	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0112154_17	COG	COG1511	NA	NA
UHGV-0112154_17	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0112154_18	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0112154_18	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-0112154_18	eggNOG-mapper	1410626.JHXB01000001_gene2137	repeat protein	NA
UHGV-0112154_18	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0112154_18	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0112154_18	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-0112154_19	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0112154_19	UniRef90	UniRef90_UPI0009D7969F	transporter	NA
UHGV-0112154_19	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0112154_19	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0112154_19	COG	COG3617	Prophage antirepressor	NA
UHGV-0112154_19	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0112154_20	PHROG	phrog_1194	NA	unknown function
UHGV-0112154_20	Pfam	PF20458	NA	DUF6711
UHGV-0112154_20	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0112154_21	PHROG	phrog_18190	NA	unknown function
UHGV-0112154_21	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0112154_21	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0112154_21	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0112154_21	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0112154_22	PHROG	phrog_17196	kinase	other
UHGV-0112154_22	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0112154_22	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0112154_25	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0112154_26	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0112154_26	Structural annotation	NF040910	NA	NA
UHGV-0112154_28	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0112154_28	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0112154_28	UniRef90	UniRef90_A0A173RCH7	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0112154_28	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0112154_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112154_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0112154_28	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0112154_29	PHROG	phrog_32192	NA	unknown function
UHGV-0112154_29	UniRef90	UniRef90_UPI001D0221FF	alanine-zipper protein	NA
UHGV-0112154_34	PHROG	phrog_26861	NA	unknown function
UHGV-0112154_34	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0112154_34	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-0112154_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0112154_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0112154_34	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0112154_36	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0112154_36	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112154_36	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0112154_36	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0112154_36	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-0112154_36	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0112154_36	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0112154_39	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0112154_41	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0112154_41	UniRef90	UniRef90_UPI001904C527	recombinase RecT	NA
UHGV-0112154_41	eggNOG-mapper	537013.CLOSTMETH_01715	NA	NA
UHGV-0112154_41	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0112154_42	PHROG	phrog_25456	NA	unknown function
UHGV-0112154_43	KOfam	K00953	FLAD1; FAD synthetase [EC:2.7.7.2]	NA
UHGV-0112154_43	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0112154_43	UniRef90	UniRef90_A0A843HLL6	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0112154_43	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0112154_43	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0112154_43	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0112154_43	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0112154_44	eggNOG-mapper	658655.HMPREF0988_00883	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0112154_44	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0112154_45	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0112154_45	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0112154_45	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0112154_45	eggNOG-mapper	658655.HMPREF0988_00882	Metallo-beta-lactamase superfamily	NA
UHGV-0112154_45	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0112154_45	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0112154_47	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112154_47	UniRef90	UniRef90_A0A5C1KBZ7	HNH endonuclease	NA
UHGV-0112154_47	eggNOG-mapper	1460635.JCM19038_3433	NA	NA
UHGV-0112154_48	PHROG	phrog_19106	NA	unknown function
UHGV-0112154_48	UniRef90	UniRef90_A0A412EKN4	GIY-YIG nuclease family protein	NA
UHGV-0112154_48	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0112154_48	Structural annotation	TIGR01453	NA	NA
UHGV-0112154_50	eggNOG-mapper	411471.SUBVAR_04346	NA	NA
UHGV-0112154_50	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0112154_51	PHROG	phrog_11769	NA	unknown function
UHGV-0112154_51	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0112154_51	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0112154_51	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0112154_51	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0112154_51	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0112154_52	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0112154_52	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0112154_52	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0112154_52	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0112154_52	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0112154_52	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0112154_52	COG	COG0305	Replicative DNA helicase	NA
UHGV-0112154_52	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0112154_55	PHROG	phrog_21026	NA	unknown function
UHGV-0112154_56	eggNOG-mapper	1235793.C809_02210	NA	NA
UHGV-0112154_59	PHROG	phrog_8684	NA	unknown function
UHGV-0112154_59	UniRef90	UniRef90_UPI001D033076	YopX family protein	NA
UHGV-0112154_59	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0112154_59	Pfam	PF09643	YopX protein	YopX
UHGV-0112154_59	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0112154_59	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0112154_60	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-0112154_62	PHROG	phrog_20593	NA	unknown function
UHGV-0112154_63	PHROG	phrog_874	NA	unknown function
UHGV-0112154_63	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0112154_63	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0112154_66	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0112154_66	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0112154_66	UniRef90	UniRef90_A0A3R6JG61	Methyltransferase	NA
UHGV-0112154_66	eggNOG-mapper	981335.G4W934_9CAUD	N-methyltransferase activity	NA
UHGV-0112154_66	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0112154_66	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0112154_66	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0112154_67	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0112154_67	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0112154_67	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0112154_68	KOfam	K14059	int; integrase	NA
UHGV-0112154_68	PHROG	phrog_1	integrase	integration and excision
UHGV-0112154_68	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0112154_68	eggNOG-mapper	397291.C804_00897	Phage integrase family	NA
UHGV-0112154_68	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0112154_68	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0112154_68	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0112154_70	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0112154_71	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0112154_72	PHROG	phrog_16490	NA	unknown function
UHGV-0112154_72	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0112154_73	PHROG	phrog_20016	NA	unknown function
UHGV-0112154_73	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0112154_73	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0112154_73	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0112154_74	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0112154_75	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0112154_75	Structural annotation	PF13058	NA	NA
UHGV-0112154_79	Structural annotation	PF08207, MF_00085, TIGR00037, COG0231	NA	NA
UHGV-0112154_83	UniRef90	UniRef90_UPI001D008199	helix-turn-helix domain-containing protein	NA
UHGV-0112154_83	eggNOG-mapper	877411.JMMA01000002_gene1483	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0112154_83	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0112154_85	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0112154_86	Structural annotation	PF10750, MF_00508, TIGR00166	NA	NA
UHGV-0112154_88	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0112154_88	UniRef90	UniRef90_A0A7X8JSS5	Nucleotide pyrophosphohydrolase	NA
UHGV-0112154_88	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0112154_88	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0112154_89	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0112154_93	Structural annotation	PF04466	NA	NA
UHGV-0112154_96	UniRef90	UniRef90_A0A8D9PG29	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0112154_98	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0112154_98	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0112154_98	UniRef90	UniRef90_A0A8D9PG28	tRNA-splicing ligase	NA
UHGV-0112154_98	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-0112154_98	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0112154_98	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0112154_98	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0112154_99	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0112154_99	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0112154_99	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0112154_99	COG	COG5410	NA	NA
UHGV-0112154_99	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0112154_100	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0112154_100	UniRef90	UniRef90_A0A371AT86	NA	NA
UHGV-0112154_100	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0112154_100	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0112154_100	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0112154_101	PHROG	phrog_64	portal protein	head and packaging
UHGV-0112154_101	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0112154_101	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0112154_101	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0112154_101	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA