UHGV-0112170

Genome information

vOTU vOTU-041956

Genome length 35,236 bps

CDS count 56

Completeness 86.30% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112170
vOTU ID	vOTU-041956
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_258100
BioSample	SAMEA3708737
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.69
Jumbo phage	No

Genome content
Genome length	35,236 bps
GC content	50.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.18%
Average CDS length	571.50 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112170_1	KOfam	K03169	topB; DNA topoisomerase III [EC:5.6.2.1]	NA
UHGV-0112170_1	PHROG	phrog_13226	NA	unknown function
UHGV-0112170_1	UniRef90	UniRef90_A0A0J9FDS0	Omega-protein	NA
UHGV-0112170_1	eggNOG-mapper	393921.HQ45_02155	DNA topoisomerase	NA
UHGV-0112170_1	PADLOC	DpdF_00011	DpdF	DPD
UHGV-0112170_1	Pfam	PF01751	Toprim domain	Toprim
UHGV-0112170_1	Pfam	PF01131	DNA topoisomerase	Topoisom_bac
UHGV-0112170_1	COG	COG0550	DNA topoisomerase IA	NA
UHGV-0112170_2	PHROG	phrog_4652	NA	unknown function
UHGV-0112170_2	eggNOG-mapper	397290.C810_01459	NA	NA
UHGV-0112170_3	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0112170_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0112170_3	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0112170_3	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0112170_4	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-0112170_4	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0112170_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0112170_5	UniRef90	UniRef90_UPI00189845EC	helix-turn-helix domain-containing protein	NA
UHGV-0112170_5	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0112170_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0112170_5	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0112170_6	Structural annotation	PF10007, MF_01819, TIGR03433, COG1733	NA	NA
UHGV-0112170_8	PHROG	phrog_10934	NA	unknown function
UHGV-0112170_8	eggNOG-mapper	883066.HMPREF9233_01038	NA	NA
UHGV-0112170_9	KOfam	K14059	int; integrase	NA
UHGV-0112170_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0112170_9	UniRef90	UniRef90_A0A1Y4T0F9	Tyr recombinase domain-containing protein	NA
UHGV-0112170_9	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0112170_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0112170_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0112170_9	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0112170_11	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0112170_12	Structural annotation	PF12510	NA	NA
UHGV-0112170_13	PHROG	phrog_20016	NA	unknown function
UHGV-0112170_13	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0112170_13	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0112170_14	PHROG	phrog_16490	NA	unknown function
UHGV-0112170_14	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0112170_15	PHROG	phrog_22984	NA	unknown function
UHGV-0112170_16	PHROG	phrog_21718	NA	unknown function
UHGV-0112170_16	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0112170_17	PHROG	phrog_3754	NA	unknown function
UHGV-0112170_17	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0112170_18	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0112170_18	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0112170_18	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0112170_19	PHROG	phrog_13256	NA	unknown function
UHGV-0112170_19	eggNOG-mapper	1226322.HMPREF1545_02800	NA	NA
UHGV-0112170_20	UniRef90	UniRef90_UPI00102F4BEE	CTP synthase	NA
UHGV-0112170_20	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0112170_21	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0112170_21	PHROG	phrog_14988	peptidase	other
UHGV-0112170_21	UniRef90	UniRef90_UPI0019599082	M23 family metallopeptidase	NA
UHGV-0112170_21	eggNOG-mapper	1120746.CCNL01000017_gene3150	Peptidase family M23	NA
UHGV-0112170_21	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0112170_21	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0112170_21	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0112170_23	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0112170_23	UniRef90	UniRef90_UPI000B0FF2B9	phage tail assembly chaperone	NA
UHGV-0112170_23	eggNOG-mapper	666685.R2APBS1_2865	Phage tail assembly chaperone protein	NA
UHGV-0112170_23	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0112170_23	Structural annotation	PF16778	NA	NA
UHGV-0112170_24	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0112170_24	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0112170_24	UniRef90	UniRef90_A0A1F8V0T1	Reverse transcriptase domain-containing protein	NA
UHGV-0112170_24	eggNOG-mapper	411468.CLOSCI_01505	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0112170_24	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0112170_24	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0112170_24	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0112170_24	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0112170_25	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-0112170_25	PHROG	phrog_5302	tail protein	tail
UHGV-0112170_25	UniRef90	UniRef90_A0A1F8V1G3	BppU_N domain-containing protein	NA
UHGV-0112170_25	eggNOG-mapper	411470.RUMGNA_00248	Phage tail-collar fibre protein	NA
UHGV-0112170_25	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0112170_27	PHROG	phrog_9534	head protein	head and packaging
UHGV-0112170_27	eggNOG-mapper	864178.E2ELJ8_9CAUD	cell adhesion	NA
UHGV-0112170_27	Structural annotation	PF18463, PF20747	NA	NA
UHGV-0112170_28	PHROG	phrog_538	minor tail protein	tail
UHGV-0112170_28	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0112170_28	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0112170_28	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0112170_29	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0112170_29	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0112170_29	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0112170_29	COG	COG4722	Phage-related protein YomH	NA
UHGV-0112170_29	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0112170_30	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0112170_30	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-0112170_30	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0112170_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0112170_30	Structural annotation	PF20155	NA	NA
UHGV-0112170_32	PHROG	phrog_18646	NA	unknown function
UHGV-0112170_32	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-0112170_33	PHROG	phrog_885	major tail protein	tail
UHGV-0112170_33	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0112170_33	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0112170_33	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0112170_34	Structural annotation	PF11367	NA	NA
UHGV-0112170_35	PHROG	phrog_17977	NA	unknown function
UHGV-0112170_35	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0112170_35	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0112170_37	PHROG	phrog_544	major head protein	head and packaging
UHGV-0112170_37	UniRef90	UniRef90_UPI0019576143	N4-gp56 family major capsid protein	NA
UHGV-0112170_37	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0112170_37	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0112170_37	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0112170_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0112170_38	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0112170_38	Structural annotation	PF06810	NA	NA
UHGV-0112170_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0112170_39	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0112170_39	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0112170_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0112170_39	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0112170_39	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0112170_41	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0112170_41	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0112170_41	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0112170_41	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0112170_41	COG	COG2369	NA	NA
UHGV-0112170_41	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0112170_42	PHROG	phrog_64	portal protein	head and packaging
UHGV-0112170_42	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0112170_42	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0112170_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0112170_42	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0112170_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0112170_43	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0112170_43	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0112170_43	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0112170_43	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0112170_43	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0112170_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0112170_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0112170_43	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0112170_44	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0112170_44	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0112170_44	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0112170_44	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0112170_44	Structural annotation	PF16677	NA	NA
UHGV-0112170_45	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0112170_45	Pfam	PF07374	NA	DUF1492
UHGV-0112170_45	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0112170_45	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-0112170_48	PHROG	phrog_16244	NA	unknown function
UHGV-0112170_49	Structural annotation	PF16069, NF040508	NA	NA
UHGV-0112170_50	PHROG	phrog_9958	NA	unknown function
UHGV-0112170_50	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0112170_50	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0112170_50	Structural annotation	PF19789	NA	NA
UHGV-0112170_55	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112170_55	UniRef90	UniRef90_A0A7W0C2S3	Putative transcriptional regulator	NA
UHGV-0112170_55	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0112170_55	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0112170_56	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0112170_56	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0112170_56	UniRef90	UniRef90_UPI001C01A488	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0112170_56	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0112170_56	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0112170_56	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0112170_56	Structural annotation	PF05866, NF007305, COG4570	NA	NA