UHGV-0112183

Genome information

Genome length 36,936 bps

CDS count 44

Completeness 91.46% (high-quality)

geNomad score 0.9703

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112183
vOTU ID	vOTU-073964
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_246941
BioSample	SAMEA3708715
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.46% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9703
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.52
Jumbo phage	No

Genome content
Genome length	36,936 bps
GC content	39.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.39%
Average CDS length	787.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112183_1	KOfam	K14059	int; integrase	NA
UHGV-0112183_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0112183_1	UniRef90	UniRef90_UPI001C011E7D	tyrosine-type recombinase/integrase	NA
UHGV-0112183_1	eggNOG-mapper	931626.Awo_c31360	Phage integrase family	NA
UHGV-0112183_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0112183_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0112183_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0112183_2	UniRef90	UniRef90_A0A3R6Q4V1	YHYH domain-containing protein	NA
UHGV-0112183_2	eggNOG-mapper	1163671.JAGI01000002_gene1685	Flagellar rod assembly protein muramidase FlgJ	NA
UHGV-0112183_2	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0112183_2	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0112183_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0112183_4	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0112183_4	UniRef90	UniRef90_A0A1Q6KGJ8	Transcriptional regulator	NA
UHGV-0112183_4	eggNOG-mapper	411470.RUMGNA_00189	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0112183_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112183_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0112183_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0112183_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0112183_6	UniRef90	UniRef90_A0A1Q6KH79	Transcriptional regulator	NA
UHGV-0112183_6	eggNOG-mapper	1235793.C809_03587	Helix-turn-helix XRE-family like proteins	NA
UHGV-0112183_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112183_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0112183_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0112183_10	PHROG	phrog_6058	NA	unknown function
UHGV-0112183_10	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-0112183_10	eggNOG-mapper	665956.HMPREF1032_00623	NA	NA
UHGV-0112183_10	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0112183_11	Structural annotation	PF07408, MF_01560, TIGR00029, COG0268	NA	NA
UHGV-0112183_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0112183_14	eggNOG-mapper	411459.RUMOBE_00953	NA	NA
UHGV-0112183_14	Structural annotation	PF01446	NA	NA
UHGV-0112183_15	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0112183_15	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0112183_15	UniRef90	UniRef90_A0A1Q6KIM6	RNase H type-1 domain-containing protein	NA
UHGV-0112183_15	eggNOG-mapper	767817.Desgi_2105	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0112183_15	Pfam	PF00075	RNase H	RNase_H
UHGV-0112183_15	COG	COG0328	Ribonuclease HI	NA
UHGV-0112183_15	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0112183_16	eggNOG-mapper	411902.CLOBOL_05699	NA	NA
UHGV-0112183_17	PHROG	phrog_8470	NA	unknown function
UHGV-0112183_17	UniRef90	UniRef90_UPI00164C094F	PcfJ domain-containing protein	NA
UHGV-0112183_17	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-0112183_17	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0112183_17	Structural annotation	PF14284	NA	NA
UHGV-0112183_18	PHROG	phrog_15077	NA	unknown function
UHGV-0112183_18	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-0112183_18	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-0112183_18	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0112183_19	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-0112183_19	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0112183_22	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0112183_22	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0112183_22	UniRef90	UniRef90_A0A3R5ZUS2	DNA adenine methylase	NA
UHGV-0112183_22	eggNOG-mapper	411468.CLOSCI_00302	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0112183_22	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0112183_22	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0112183_22	COG	COG0338	DNA-adenine methylase	NA
UHGV-0112183_22	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0112183_24	UniRef90	UniRef90_UPI00129E4C6A	NA	NA
UHGV-0112183_25	Structural annotation	PF11184	NA	NA
UHGV-0112183_27	UniRef90	UniRef90_UPI001C126443	NA	NA
UHGV-0112183_27	eggNOG-mapper	622312.ROSEINA2194_04464	NA	NA
UHGV-0112183_27	Pfam	PF14199	NA	DUF4317
UHGV-0112183_27	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0112183_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0112183_29	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0112183_29	UniRef90	UniRef90_A0A4P9C628	Phage portal protein	NA
UHGV-0112183_29	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0112183_29	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0112183_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0112183_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0112183_29	Structural annotation	PF03592, PF06056, NF040601, COG3728	NA	NA
UHGV-0112183_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0112183_30	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0112183_30	UniRef90	UniRef90_A0A2V2D4K5	Terminase-like family protein	NA
UHGV-0112183_30	eggNOG-mapper	411483.FAEPRAA2165_01044	Terminase-like family	NA
UHGV-0112183_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0112183_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0112183_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0112183_31	PHROG	phrog_156	portal protein	head and packaging
UHGV-0112183_31	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0112183_31	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0112183_31	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0112183_32	KOfam	K07584	NA	NA
UHGV-0112183_32	PHROG	phrog_4478	peptidase	other
UHGV-0112183_32	UniRef90	UniRef90_A0A4Z0D3U3	Ribosomal-processing cysteine protease Prp	NA
UHGV-0112183_32	eggNOG-mapper	1123009.AUID01000013_gene1737	Cysteine protease Prp	NA
UHGV-0112183_32	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0112183_32	COG	COG2868	NA	NA
UHGV-0112183_32	Structural annotation	NF011130, COG2868	NA	NA
UHGV-0112183_33	PHROG	phrog_13908	NA	unknown function
UHGV-0112183_33	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0112183_34	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0112183_34	UniRef90	UniRef90_A0A3R6PQZ4	N4-gp56 family major capsid protein	NA
UHGV-0112183_34	eggNOG-mapper	748224.HMPREF9436_01399	NA	NA
UHGV-0112183_34	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0112183_34	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0112183_35	PHROG	phrog_15239	NA	unknown function
UHGV-0112183_36	PHROG	phrog_12105	NA	unknown function
UHGV-0112183_36	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0112183_37	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0112183_37	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0112183_37	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0112183_39	PHROG	phrog_21397	NA	unknown function
UHGV-0112183_39	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0112183_40	PHROG	phrog_22978	NA	unknown function
UHGV-0112183_40	UniRef90	UniRef90_A0A396KH15	PBECR3 domain-containing protein	NA
UHGV-0112183_40	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0112183_40	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0112183_41	PHROG	phrog_31398	NA	unknown function
UHGV-0112183_41	UniRef90	UniRef90_A0A1I0BH39	BppU_N domain-containing protein	NA
UHGV-0112183_41	eggNOG-mapper	397288.C806_02170	NA	NA
UHGV-0112183_41	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0112183_41	Structural annotation	PF10651	NA	NA
UHGV-0112183_43	PHROG	phrog_199	holin	lysis
UHGV-0112183_43	UniRef90	UniRef90_A0A414REB4	Holin	NA
UHGV-0112183_43	eggNOG-mapper	428126.CLOSPI_02191	Bacteriophage holin family	NA
UHGV-0112183_43	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0112183_43	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0112183_43	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0112183_44	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0112183_44	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0112183_44	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0112183_44	Structural annotation	PF14359	NA	NA