UHGV-0112192

Genome information

Genome length 39,903 bps

CDS count 55

Completeness 88.47% (medium-quality)

geNomad score 0.9738

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112192
vOTU ID	vOTU-016305
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_246940
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9738
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.72
Jumbo phage	No

Genome content
Genome length	39,903 bps
GC content	47.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.12%
Average CDS length	662.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112192_1	KOfam	K14059	int; integrase	NA
UHGV-0112192_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0112192_1	UniRef90	UniRef90_A0A352UQ74	Site-specific integrase	NA
UHGV-0112192_1	eggNOG-mapper	1120998.AUFC01000030_gene2201	Belongs to the 'phage' integrase family	NA
UHGV-0112192_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0112192_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0112192_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0112192_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0112192_1	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0112192_2	PHROG	phrog_17982	NA	unknown function
UHGV-0112192_2	UniRef90	UniRef90_A0A0X1U7N9	NA	NA
UHGV-0112192_2	eggNOG-mapper	1035308.AQYY01000001_gene2496	belongs to the thioredoxin family	NA
UHGV-0112192_2	Pfam	PF14020	NA	DUF4236
UHGV-0112192_2	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0112192_2	Structural annotation	PF14020, PF02368, COG1721	NA	NA
UHGV-0112192_3	PHROG	phrog_7115	NA	unknown function
UHGV-0112192_3	UniRef90	UniRef90_A0A173UN76	PH domain-containing protein	NA
UHGV-0112192_3	eggNOG-mapper	476272.RUMHYD_02184	Bacterial PH domain	NA
UHGV-0112192_3	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0112192_3	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0112192_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0112192_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0112192_4	UniRef90	UniRef90_A0A350TVK1	XRE family transcriptional regulator	NA
UHGV-0112192_4	eggNOG-mapper	1033744.CAEL01000029_gene1309	Peptidase S24-like	NA
UHGV-0112192_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112192_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0112192_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0112192_4	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0112192_5	UniRef90	UniRef90_A0A1Y4RLF1	NA	NA
UHGV-0112192_5	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0112192_5	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0112192_5	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0112192_6	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0112192_7	PHROG	phrog_5079	NA	unknown function
UHGV-0112192_7	eggNOG-mapper	1204534.J9QDX8_9CAUD	NA	NA
UHGV-0112192_12	UniRef90	UniRef90_A0A416KCJ3	DNA-binding protein	NA
UHGV-0112192_12	eggNOG-mapper	246199.CUS_5199	Helix-turn-helix domain	NA
UHGV-0112192_12	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0112192_12	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0112192_14	PHROG	phrog_408	NA	unknown function
UHGV-0112192_14	eggNOG-mapper	411473.RUMCAL_00913	NOG23194 non supervised orthologous group	NA
UHGV-0112192_15	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112192_15	UniRef90	UniRef90_A0A358NI58	NA	NA
UHGV-0112192_15	eggNOG-mapper	1134413.ANNK01000054_gene2216	NA	NA
UHGV-0112192_15	Pfam	PF10926	NA	DUF2800
UHGV-0112192_15	COG	COG2887	RecB family exonuclease	NA
UHGV-0112192_15	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0112192_16	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0112192_16	UniRef90	UniRef90_A0A412UNI7	NA	NA
UHGV-0112192_16	eggNOG-mapper	573061.Clocel_0760	NA	NA
UHGV-0112192_16	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0112192_16	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0112192_17	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0112192_17	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0112192_17	UniRef90	UniRef90_A0A348Z938	POLAc domain-containing protein	NA
UHGV-0112192_17	eggNOG-mapper	696281.Desru_1077	DNA polymerase	NA
UHGV-0112192_17	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0112192_17	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0112192_17	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0112192_18	UniRef90	UniRef90_D9QQT0	NA	NA
UHGV-0112192_18	eggNOG-mapper	574087.Acear_1358	NA	NA
UHGV-0112192_18	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0112192_18	Structural annotation	PF20075, TIGR03070, COG3655	NA	NA
UHGV-0112192_20	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112192_20	UniRef90	UniRef90_A0A0H3N242	Phage-related protein	NA
UHGV-0112192_20	eggNOG-mapper	511437.Lbuc_1541	NA	NA
UHGV-0112192_20	Structural annotation	PF17375	NA	NA
UHGV-0112192_21	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0112192_21	UniRef90	UniRef90_UPI001D06E26F	virulence-associated E family protein	NA
UHGV-0112192_21	eggNOG-mapper	1567012.A0A0A7RTG3_9VIRU	Virulence-associated protein E	NA
UHGV-0112192_21	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0112192_21	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0112192_22	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112192_22	UniRef90	UniRef90_B0MB26	VRR-NUC domain protein	NA
UHGV-0112192_22	eggNOG-mapper	411490.ANACAC_00752	VRR-NUC domain protein	NA
UHGV-0112192_22	Structural annotation	PF01974, MF_01490, NF002584	NA	NA
UHGV-0112192_23	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0112192_23	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0112192_23	UniRef90	UniRef90_A0A348Z935	DEAD/DEAH box helicase	NA
UHGV-0112192_23	eggNOG-mapper	97138.C820_00220	snf2 family	NA
UHGV-0112192_23	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0112192_23	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0112192_23	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0112192_23	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0112192_23	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0112192_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0112192_25	UniRef90	UniRef90_A0A396PTA3	NA	NA
UHGV-0112192_25	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-0112192_25	Pfam	PF07374	NA	DUF1492
UHGV-0112192_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0112192_25	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0112192_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0112192_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0112192_26	UniRef90	UniRef90_A0A2A5T8S2	Terminase small subunit	NA
UHGV-0112192_26	eggNOG-mapper	1158614.I592_02274	Terminase small subunit	NA
UHGV-0112192_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0112192_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0112192_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0112192_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0112192_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0112192_27	UniRef90	UniRef90_A0A396NWZ4	PBSX family phage terminase large subunit	NA
UHGV-0112192_27	eggNOG-mapper	536233.CLO_0881	Phage terminase, large subunit, PBSX family	NA
UHGV-0112192_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0112192_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0112192_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0112192_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0112192_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0112192_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0112192_28	UniRef90	UniRef90_R5ADJ4	Phage minor capsid protein	NA
UHGV-0112192_28	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0112192_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0112192_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0112192_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0112192_29	UniRef90	UniRef90_A0A396NP47	Phage capsid protein	NA
UHGV-0112192_29	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0112192_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0112192_29	COG	COG2369	NA	NA
UHGV-0112192_29	Structural annotation	PF06152, PF12106	NA	NA
UHGV-0112192_30	PHROG	phrog_15041	NA	unknown function
UHGV-0112192_30	eggNOG-mapper	478749.BRYFOR_07608	NA	NA
UHGV-0112192_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0112192_32	PHROG	phrog_422	major head protein	head and packaging
UHGV-0112192_32	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0112192_32	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0112192_32	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0112192_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0112192_34	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0112192_35	PHROG	phrog_3366	NA	unknown function
UHGV-0112192_35	Pfam	PF20536	NA	DUF6751
UHGV-0112192_35	Structural annotation	PF20536, COG1853	NA	NA
UHGV-0112192_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0112192_36	UniRef90	UniRef90_UPI000F63A4E5	minor capsid protein	NA
UHGV-0112192_36	eggNOG-mapper	903814.ELI_3205	Minor capsid protein	NA
UHGV-0112192_36	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0112192_36	Structural annotation	PF11114	NA	NA
UHGV-0112192_37	PHROG	phrog_3266	tail completion	connector
UHGV-0112192_37	UniRef90	UniRef90_A0A353IZQ8	Chloramphenicol resistance protein	NA
UHGV-0112192_37	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-0112192_37	Structural annotation	PF12691	NA	NA
UHGV-0112192_38	PHROG	phrog_3099	NA	unknown function
UHGV-0112192_38	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-0112192_38	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0112192_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0112192_39	Structural annotation	PF20378	NA	NA
UHGV-0112192_40	PHROG	phrog_706	NA	unknown function
UHGV-0112192_40	UniRef90	UniRef90_UPI001D122605	bacteriophage Gp15 family protein	NA
UHGV-0112192_40	eggNOG-mapper	1151292.QEW_4528	Bacteriophage Gp15 protein	NA
UHGV-0112192_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0112192_40	Structural annotation	PF06854	NA	NA
UHGV-0112192_41	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0112192_41	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0112192_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0112192_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0112192_42	UniRef90	UniRef90_R5ADI0	Putative phage tail component	NA
UHGV-0112192_42	eggNOG-mapper	1262449.CP6013_2095	tail component	NA
UHGV-0112192_42	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0112192_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0112192_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0112192_43	PHROG	phrog_863	tail fiber assembly	tail
UHGV-0112192_43	UniRef90	UniRef90_A0A136WFR9	BppU_N domain-containing protein	NA
UHGV-0112192_43	eggNOG-mapper	1232449.BAHV02000010_gene2732	NA	NA
UHGV-0112192_43	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0112192_43	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0112192_43	Structural annotation	PF10651, PF21722, NF032891, COG2372	NA	NA
UHGV-0112192_45	PHROG	phrog_2310	NA	unknown function
UHGV-0112192_45	eggNOG-mapper	1391647.AVSV01000022_gene2576	NA	NA
UHGV-0112192_46	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0112192_46	UniRef90	UniRef90_A0A396NSB6	Prophage_tail domain-containing protein	NA
UHGV-0112192_46	eggNOG-mapper	1443125.Z962_07985	Prophage endopeptidase tail	NA
UHGV-0112192_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0112192_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0112192_46	COG	COG4926	Phage-related protein	NA
UHGV-0112192_46	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0112192_47	PHROG	phrog_937	hemolysin	other
UHGV-0112192_47	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0112192_49	PHROG	phrog_36029	NA	unknown function
UHGV-0112192_49	UniRef90	UniRef90_A0A318KD97	Superfamily 6 holin (LLH)	NA
UHGV-0112192_49	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-0112192_50	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0112192_50	UniRef90	UniRef90_A0A0X8VCT6	NlpC/P60 domain-containing protein	NA
UHGV-0112192_50	eggNOG-mapper	411902.CLOBOL_04837	Phage lysozyme	NA
UHGV-0112192_50	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0112192_50	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0112192_51	PHROG	phrog_13890	NA	unknown function
UHGV-0112192_51	eggNOG-mapper	1232453.BAIF02000002_gene1276	NA	NA
UHGV-0112192_51	Structural annotation	PF10723, NF010256, COG4877	NA	NA
UHGV-0112192_52	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0112192_52	UniRef90	UniRef90_UPI000E47F582	helix-turn-helix domain-containing protein	NA
UHGV-0112192_52	eggNOG-mapper	1196322.A370_04524	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0112192_52	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0112192_52	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-0112192_53	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0112192_53	UniRef90	UniRef90_A0A350TXK3	ORF6N domain-containing protein	NA
UHGV-0112192_53	eggNOG-mapper	658655.HMPREF0988_00907	ORF6N domain	NA
UHGV-0112192_53	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0112192_53	Structural annotation	PF10543, TIGR02681, COG3561	NA	NA
UHGV-0112192_55	KOfam	K20974	K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]	NA
UHGV-0112192_55	PHROG	phrog_20458	NA	unknown function
UHGV-0112192_55	UniRef90	UniRef90_A0A350TZJ0	Stage 0 sporulation protein A homolog (Fragment)	NA
UHGV-0112192_55	eggNOG-mapper	457412.RSAG_00853	His Kinase A (phosphoacceptor) domain	NA
UHGV-0112192_55	Pfam	PF00512	His Kinase A (phospho-acceptor) domain	HisKA
UHGV-0112192_55	Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c
UHGV-0112192_55	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0112192_55	COG	COG0642	Signal transduction histidine kinase	NA