UHGV-0112210

Genome information

Genome length 37,564 bps

CDS count 62

Completeness 83.10% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112210
vOTU ID	vOTU-042398
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_250711
BioSample	SAMEA3708793
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.53
Jumbo phage	No

Genome content
Genome length	37,564 bps
GC content	40.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	92.13%
Average CDS length	562.02 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112210_1	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0112210_1	UniRef90	UniRef90_A0A416SLU4	XRE family transcriptional regulator	NA
UHGV-0112210_1	eggNOG-mapper	697281.Mahau_0099	PFAM Helix-turn-helix	NA
UHGV-0112210_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112210_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0112210_1	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0112210_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0112210_2	UniRef90	UniRef90_A0A412ELD4	XRE family transcriptional regulator	NA
UHGV-0112210_2	eggNOG-mapper	1235801.C822_00106	Helix-turn-helix XRE-family like proteins	NA
UHGV-0112210_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0112210_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112210_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0112210_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0112210_8	PHROG	phrog_5070	NA	unknown function
UHGV-0112210_8	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0112210_8	eggNOG-mapper	478749.BRYFOR_05427	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0112210_8	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0112210_8	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0112210_13	Structural annotation	NF011879	NA	NA
UHGV-0112210_14	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0112210_15	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0112210_15	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-0112210_15	eggNOG-mapper	397290.C810_05165	AAA domain	NA
UHGV-0112210_15	Pfam	PF13479	AAA domain	AAA_24
UHGV-0112210_15	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0112210_16	PHROG	phrog_18107	NA	unknown function
UHGV-0112210_16	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-0112210_16	Structural annotation	PF05037	NA	NA
UHGV-0112210_17	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0112210_17	UniRef90	UniRef90_R9KEE1	ERCC4 domain-containing protein	NA
UHGV-0112210_17	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-0112210_17	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0112210_17	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0112210_18	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0112210_18	PHROG	phrog_11992	NA	unknown function
UHGV-0112210_18	UniRef90	UniRef90_A0A3A6GSV7	DNA primase	NA
UHGV-0112210_18	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0112210_18	PADLOC	drt-UG29	DRT	DRT
UHGV-0112210_18	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0112210_18	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0112210_18	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0112210_19	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0112210_19	UniRef90	UniRef90_A0A3A6GQS5	NA	NA
UHGV-0112210_19	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0112210_19	Pfam	PF06048	NA	DUF927
UHGV-0112210_19	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0112210_19	COG	COG5519	NA	NA
UHGV-0112210_19	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0112210_20	KOfam	K15255	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	NA
UHGV-0112210_20	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-0112210_20	UniRef90	UniRef90_A0A2V2D011	AAA domain-containing protein	NA
UHGV-0112210_20	eggNOG-mapper	1121333.JMLH01000003_gene334	PIF1-like helicase	NA
UHGV-0112210_20	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-0112210_20	Pfam	PF05970	PIF1-like helicase	PIF1
UHGV-0112210_20	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0112210_20	Structural annotation	PF05970, PF16277, MF_03176, TIGR01448, COG0507	NA	NA
UHGV-0112210_22	PHROG	phrog_17690	NA	unknown function
UHGV-0112210_22	eggNOG-mapper	476272.RUMHYD_03925	NA	NA
UHGV-0112210_23	UniRef90	UniRef90_A0A373P4I4	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0112210_23	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0112210_24	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0112210_24	UniRef90	UniRef90_UPI001898E47B	SAM-dependent methyltransferase	NA
UHGV-0112210_24	eggNOG-mapper	903814.ELI_1283	methyltransferase	NA
UHGV-0112210_24	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0112210_24	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0112210_24	Structural annotation	PF05148, MF_01057, NF011527, COG4123	NA	NA
UHGV-0112210_25	eggNOG-mapper	568816.Acin_1246	NA	NA
UHGV-0112210_27	PHROG	phrog_8684	NA	unknown function
UHGV-0112210_27	UniRef90	UniRef90_A0A1C5WGR7	YopX protein	NA
UHGV-0112210_27	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0112210_27	Pfam	PF09643	YopX protein	YopX
UHGV-0112210_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0112210_31	eggNOG-mapper	397288.C806_00098	NA	NA
UHGV-0112210_33	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0112210_33	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0112210_33	eggNOG-mapper	588581.Cpap_1498	COG NOG14118 non supervised orthologous group	NA
UHGV-0112210_33	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0112210_33	Structural annotation	PF12643, NF001613, COG0140	NA	NA
UHGV-0112210_34	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0112210_34	AcrCatalog	cluster_11670	NA	NA
UHGV-0112210_35	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0112210_35	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0112210_35	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0112210_35	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0112210_35	Structural annotation	PF16677	NA	NA
UHGV-0112210_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0112210_36	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0112210_36	UniRef90	UniRef90_A0A395X9V4	PBSX family phage terminase large subunit	NA
UHGV-0112210_36	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0112210_36	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0112210_36	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0112210_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0112210_36	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0112210_37	PHROG	phrog_533	portal protein	head and packaging
UHGV-0112210_37	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0112210_37	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0112210_37	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0112210_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0112210_38	UniRef90	UniRef90_UPI001C0ECC47	minor capsid protein	NA
UHGV-0112210_38	eggNOG-mapper	1449343.JQLQ01000002_gene1329	Minor capsid protein	NA
UHGV-0112210_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0112210_38	Structural annotation	PF11114	NA	NA
UHGV-0112210_39	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0112210_39	UniRef90	UniRef90_UPI001C0EDE82	phage minor capsid protein	NA
UHGV-0112210_39	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0112210_39	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0112210_39	COG	COG2369	NA	NA
UHGV-0112210_39	Structural annotation	PF06152	NA	NA
UHGV-0112210_40	PHROG	phrog_3754	NA	unknown function
UHGV-0112210_40	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0112210_41	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0112210_41	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0112210_42	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0112210_42	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0112210_42	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0112210_43	PHROG	phrog_21718	NA	unknown function
UHGV-0112210_43	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0112210_44	PHROG	phrog_22984	NA	unknown function
UHGV-0112210_45	PHROG	phrog_16490	NA	unknown function
UHGV-0112210_45	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0112210_46	PHROG	phrog_20016	NA	unknown function
UHGV-0112210_46	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0112210_46	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0112210_46	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0112210_47	PHROG	phrog_28802	NA	unknown function
UHGV-0112210_47	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0112210_48	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0112210_48	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0112210_48	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0112210_48	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0112210_49	PHROG	phrog_544	major head protein	head and packaging
UHGV-0112210_49	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0112210_49	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0112210_49	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0112210_49	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0112210_50	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0112210_50	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0112210_52	PHROG	phrog_1129	holin	lysis
UHGV-0112210_52	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0112210_52	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0112210_52	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0112210_52	Structural annotation	PF06946	NA	NA
UHGV-0112210_53	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112210_53	UniRef90	UniRef90_A0A7W0C2S3	Putative transcriptional regulator	NA
UHGV-0112210_53	eggNOG-mapper	86416.Clopa_4295	NA	NA
UHGV-0112210_54	PHROG	phrog_3366	NA	unknown function
UHGV-0112210_54	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0112210_54	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0112210_55	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0112210_55	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0112210_55	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0112210_55	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0112210_55	Structural annotation	PF11114	NA	NA
UHGV-0112210_56	PHROG	phrog_3266	tail completion	connector
UHGV-0112210_56	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0112210_56	Structural annotation	PF12691	NA	NA
UHGV-0112210_57	PHROG	phrog_3099	NA	unknown function
UHGV-0112210_57	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0112210_57	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0112210_58	PHROG	phrog_11299	NA	unknown function
UHGV-0112210_58	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0112210_58	Structural annotation	PF10666	NA	NA
UHGV-0112210_59	PHROG	phrog_706	NA	unknown function
UHGV-0112210_59	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0112210_59	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0112210_59	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0112210_59	Structural annotation	PF06854	NA	NA
UHGV-0112210_60	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0112210_60	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0112210_60	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0112210_60	COG	COG1511	NA	NA
UHGV-0112210_60	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0112210_61	PHROG	phrog_1194	NA	unknown function
UHGV-0112210_61	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0112210_61	Pfam	PF20458	NA	DUF6711
UHGV-0112210_61	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0112210_62	KOfam	K17256	IGFALS, ALS; insulin-like growth factor-binding protein complex acid labile subunit	NA
UHGV-0112210_62	PHROG	phrog_35892	NA	unknown function
UHGV-0112210_62	UniRef90	UniRef90_UPI000E4C0A8F	bacterial Ig-like domain-containing protein	NA
UHGV-0112210_62	eggNOG-mapper	428125.CLOLEP_00457	endo-1,4-beta-xylanase activity	NA
UHGV-0112210_62	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0112210_62	Pfam	PF13855	Leucine rich repeat	LRR_8
UHGV-0112210_62	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0112210_62	COG	COG0683	ABC-type branched-chain amino acid transport system, periplasmic component	NA