UHGV-0112320

Genome information

vOTU vOTU-062028

Genome length 58,171 bps

CDS count 100

Completeness 99.90% (high-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112320
vOTU ID	vOTU-062028
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_245756
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.59
Jumbo phage	No

Genome content
Genome length	58,171 bps
GC content	48.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	100
CDS density	87.80%
Average CDS length	513.15 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112320_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0112320_2	Structural annotation	NF040910	NA	NA
UHGV-0112320_4	PHROG	phrog_23587	NA	unknown function
UHGV-0112320_4	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0112320_4	COG	COG5492	NA	NA
UHGV-0112320_4	Structural annotation	MF_04106	NA	NA
UHGV-0112320_6	PHROG	phrog_18725	NA	unknown function
UHGV-0112320_6	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0112320_7	PHROG	phrog_13879	NA	unknown function
UHGV-0112320_7	UniRef90	UniRef90_A0A843H6J9	Dockerin type I repeat-containing protein	NA
UHGV-0112320_7	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0112320_7	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0112320_8	PHROG	phrog_1194	NA	unknown function
UHGV-0112320_8	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0112320_8	Pfam	PF20458	NA	DUF6711
UHGV-0112320_8	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0112320_9	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0112320_9	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0112320_9	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0112320_10	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0112320_11	UniRef90	UniRef90_UPI00164D364F	NA	NA
UHGV-0112320_11	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0112320_11	Pfam	PF16478	NA	DUF5055
UHGV-0112320_11	Structural annotation	PF16478	NA	NA
UHGV-0112320_12	PHROG	phrog_158	major tail protein	tail
UHGV-0112320_12	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0112320_12	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0112320_12	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0112320_13	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0112320_15	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0112320_16	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0112320_16	Structural annotation	PF05135	NA	NA
UHGV-0112320_17	PHROG	phrog_29	major head protein	head and packaging
UHGV-0112320_17	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0112320_17	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0112320_17	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0112320_17	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0112320_20	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0112320_20	Structural annotation	PF10544	NA	NA
UHGV-0112320_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0112320_21	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0112320_21	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0112320_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0112320_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0112320_23	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0112320_23	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0112320_23	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0112320_23	COG	COG5410	NA	NA
UHGV-0112320_23	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0112320_25	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0112320_25	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0112320_25	UniRef90	UniRef90_UPI00067F3ABF	RNA-splicing ligase RtcB	NA
UHGV-0112320_25	eggNOG-mapper	1211844.CBLM010000044_gene358	tRNA-splicing ligase RtcB	NA
UHGV-0112320_25	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0112320_25	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0112320_25	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0112320_28	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0112320_28	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0112320_28	UniRef90	UniRef90_A0A1H3G7A1	Site-specific DNA recombinase	NA
UHGV-0112320_28	eggNOG-mapper	931626.Awo_c01430	Resolvase, N terminal domain	NA
UHGV-0112320_28	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0112320_28	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0112320_28	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0112320_30	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0112320_31	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0112320_31	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0112320_31	UniRef90	UniRef90_UPI0011277860	phage regulatory protein/antirepressor Ant	NA
UHGV-0112320_31	eggNOG-mapper	947981.E9LUT0_9CAUD	DNA binding	NA
UHGV-0112320_31	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0112320_31	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0112320_31	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0112320_31	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0112320_33	eggNOG-mapper	706433.HMPREF9430_00388	NA	NA
UHGV-0112320_33	Structural annotation	PF11906, PF09624, MF_00791, NF038353, NF033903, COG5633	NA	NA
UHGV-0112320_34	eggNOG-mapper	471855.Shel_11450	sh3 domain protein	NA
UHGV-0112320_34	COG	COG3103	NA	NA
UHGV-0112320_34	Structural annotation	PF03843, TIGR00752, COG3065	NA	NA
UHGV-0112320_38	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112320_38	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0112320_40	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0112320_40	UniRef90	UniRef90_B0NH38	Replication initiator protein A domain protein	NA
UHGV-0112320_40	eggNOG-mapper	411468.CLOSCI_02792	Replication initiator protein A (RepA) N-terminus	NA
UHGV-0112320_40	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0112320_40	COG	COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	NA
UHGV-0112320_40	Structural annotation	PF06970, MF_01177, NF040642, COG5625	NA	NA
UHGV-0112320_42	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0112320_42	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0112320_42	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0112320_42	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0112320_42	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0112320_42	COG	COG0305	Replicative DNA helicase	NA
UHGV-0112320_42	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0112320_43	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0112320_43	Pfam	PF19808	NA	DUF6291
UHGV-0112320_43	Structural annotation	PF19808	NA	NA
UHGV-0112320_44	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0112320_44	Structural annotation	PF14354	NA	NA
UHGV-0112320_51	Structural annotation	PF16677	NA	NA
UHGV-0112320_53	Structural annotation	MF_00085, NF003076, COG0231	NA	NA
UHGV-0112320_55	Structural annotation	MF_00085, TIGR00037, COG0231	NA	NA
UHGV-0112320_57	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0112320_57	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0112320_57	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0112320_57	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0112320_57	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0112320_57	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0112320_57	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0112320_57	Structural annotation	PF01507, MF_00064, NF003587, COG0175	NA	NA
UHGV-0112320_59	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0112320_61	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0112320_61	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0112320_61	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0112320_61	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0112320_63	Structural annotation	PF20331, COG5264	NA	NA
UHGV-0112320_64	PHROG	phrog_35094	NA	unknown function
UHGV-0112320_64	eggNOG-mapper	457424.BFAG_02409	NA	NA
UHGV-0112320_66	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0112320_66	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0112320_66	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0112320_66	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0112320_66	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0112320_66	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0112320_66	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0112320_66	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0112320_66	Structural annotation	TIGR00675	NA	NA
UHGV-0112320_67	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0112320_67	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0112320_67	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0112320_67	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0112320_67	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0112320_67	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0112320_67	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0112320_67	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0112320_67	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0112320_68	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0112320_68	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0112320_68	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0112320_68	Pfam	PF04404	ERF superfamily	ERF
UHGV-0112320_68	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0112320_69	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0112320_69	Structural annotation	PF13451	NA	NA
UHGV-0112320_71	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0112320_71	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0112320_72	Structural annotation	PF14143	NA	NA
UHGV-0112320_73	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0112320_73	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0112320_75	Structural annotation	TIGR03826	NA	NA
UHGV-0112320_76	Structural annotation	PF10922	NA	NA
UHGV-0112320_77	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0112320_77	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0112320_77	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0112320_77	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0112320_77	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0112320_77	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0112320_77	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0112320_77	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0112320_77	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0112320_78	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0112320_78	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0112320_78	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112320_78	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0112320_79	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0112320_79	UniRef90	UniRef90_A0A358M3D8	HTH cro/C1-type domain-containing protein	NA
UHGV-0112320_79	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0112320_79	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0112320_79	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0112320_80	Structural annotation	PF16311, NF038219	NA	NA
UHGV-0112320_84	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0112320_84	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112320_84	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0112320_84	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0112320_85	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0112320_85	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0112320_85	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0112320_85	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0112320_85	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0112320_85	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0112320_85	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0112320_87	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0112320_87	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0112320_87	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0112320_87	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0112320_87	Pfam	PF13614	AAA domain	AAA_31
UHGV-0112320_87	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0112320_87	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0112320_88	Structural annotation	PF07878	NA	NA
UHGV-0112320_90	Structural annotation	NF010188	NA	NA
UHGV-0112320_91	PHROG	phrog_7070	NA	unknown function
UHGV-0112320_91	eggNOG-mapper	1195072.M4HPW0_9CAUD	NA	NA
UHGV-0112320_92	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0112320_93	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0112320_94	PHROG	phrog_16490	NA	unknown function
UHGV-0112320_94	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0112320_98	PHROG	phrog_15303	NA	unknown function
UHGV-0112320_98	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0112320_100	KOfam	K07273	acm; lysozyme	NA
UHGV-0112320_100	PHROG	phrog_291	endolysin	lysis
UHGV-0112320_100	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0112320_100	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0112320_100	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0112320_100	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0112320_100	Structural annotation	PF01183, COG3757	NA	NA