UHGV-0112342

Genome information

Genome length 38,267 bps

CDS count 56

Completeness 98.13% (high-quality)

geNomad score 0.9826

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112342
vOTU ID	vOTU-014786
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253314
BioSample	SAMEA3708750
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.13% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9826
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.68
Jumbo phage	No

Genome content
Genome length	38,267 bps
GC content	47.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.19%
Average CDS length	626.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112342_1	PHROG	phrog_33061	NA	unknown function
UHGV-0112342_1	eggNOG-mapper	411468.CLOSCI_01514	NA	NA
UHGV-0112342_1	Structural annotation	PF19087	NA	NA
UHGV-0112342_2	PHROG	phrog_9589	endolysin	lysis
UHGV-0112342_2	UniRef90	UniRef90_R6H452	PG_binding_1 domain-containing protein	NA
UHGV-0112342_2	eggNOG-mapper	1232446.BAIE02000077_gene698	repeat protein	NA
UHGV-0112342_2	Pfam	PF05257	CHAP domain	CHAP
UHGV-0112342_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0112342_2	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0112342_3	PHROG	phrog_36029	NA	unknown function
UHGV-0112342_3	UniRef90	UniRef90_A0A345BPS8	Holin of superfamily 6	NA
UHGV-0112342_3	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-0112342_4	PHROG	phrog_33302	NA	unknown function
UHGV-0112342_4	eggNOG-mapper	742741.HMPREF9475_00443	NA	NA
UHGV-0112342_5	PHROG	phrog_1863	NA	unknown function
UHGV-0112342_5	UniRef90	UniRef90_A0A7W3SWZ2	Peptidoglycan hydrolase CwlO-like protein	NA
UHGV-0112342_5	eggNOG-mapper	411468.CLOSCI_01509	NA	NA
UHGV-0112342_6	PHROG	phrog_29601	NA	unknown function
UHGV-0112342_6	eggNOG-mapper	411468.CLOSCI_01508	NA	NA
UHGV-0112342_7	UniRef90	UniRef90_D4CBI0	XkdX family protein	NA
UHGV-0112342_7	eggNOG-mapper	411468.CLOSCI_01507	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0112342_7	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0112342_7	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0112342_8	PHROG	phrog_20201	NA	unknown function
UHGV-0112342_9	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0112342_9	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0112342_9	UniRef90	UniRef90_UPI001EDD71BD	RNA-directed DNA polymerase	NA
UHGV-0112342_9	eggNOG-mapper	411468.CLOSCI_01505	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0112342_9	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0112342_9	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0112342_9	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0112342_9	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0112342_10	PHROG	phrog_5302	tail protein	tail
UHGV-0112342_10	eggNOG-mapper	742741.HMPREF9475_00438	NA	NA
UHGV-0112342_10	Structural annotation	COG1262	NA	NA
UHGV-0112342_12	PHROG	phrog_31398	NA	unknown function
UHGV-0112342_12	UniRef90	UniRef90_A0A1C6JQX6	BppU_N domain-containing protein	NA
UHGV-0112342_12	eggNOG-mapper	411459.RUMOBE_01721	NA	NA
UHGV-0112342_12	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0112342_13	PHROG	phrog_11105	NA	unknown function
UHGV-0112342_15	PHROG	phrog_18110	NA	unknown function
UHGV-0112342_15	UniRef90	UniRef90_A0A7X4ZR94	Prophage_tail domain-containing protein	NA
UHGV-0112342_15	eggNOG-mapper	411459.RUMOBE_01723	Phage minor structural protein	NA
UHGV-0112342_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0112342_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0112342_15	COG	COG4926	Phage-related protein	NA
UHGV-0112342_15	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0112342_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0112342_16	UniRef90	UniRef90_UPI001D05C493	phage tail family protein	NA
UHGV-0112342_16	eggNOG-mapper	411459.RUMOBE_01724	phage tail	NA
UHGV-0112342_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-0112342_16	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0112342_17	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0112342_17	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0112342_17	UniRef90	UniRef90_UPI001D0873A5	phage tail tape measure protein	NA
UHGV-0112342_17	eggNOG-mapper	742740.HMPREF9474_01203	Phage tail tape measure protein, TP901 family	NA
UHGV-0112342_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0112342_17	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0112342_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0112342_17	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0112342_17	Structural annotation	PF10145, PF05384, TIGR01760, NF006545, COG5280	NA	NA
UHGV-0112342_18	PHROG	phrog_25901	NA	unknown function
UHGV-0112342_18	eggNOG-mapper	742741.HMPREF9475_00432	NA	NA
UHGV-0112342_18	Structural annotation	PF10109	NA	NA
UHGV-0112342_19	PHROG	phrog_13494	NA	unknown function
UHGV-0112342_19	eggNOG-mapper	411468.CLOSCI_01497	NA	NA
UHGV-0112342_19	Structural annotation	PF20378	NA	NA
UHGV-0112342_20	PHROG	phrog_88	major tail protein	tail
UHGV-0112342_20	UniRef90	UniRef90_A0A412Q217	Major tail protein	NA
UHGV-0112342_20	eggNOG-mapper	411468.CLOSCI_01496	phage major tail protein, phi13 family	NA
UHGV-0112342_20	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0112342_20	COG	COG5492	NA	NA
UHGV-0112342_20	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0112342_21	PHROG	phrog_78	tail terminator	connector
UHGV-0112342_21	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-0112342_21	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0112342_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0112342_22	UniRef90	UniRef90_B0NDG6	Phage protein, HK97 gp10 family	NA
UHGV-0112342_22	eggNOG-mapper	411468.CLOSCI_01494	Phage protein, HK97 gp10 family	NA
UHGV-0112342_22	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0112342_22	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0112342_23	PHROG	phrog_25	head closure Hc1	connector
UHGV-0112342_23	UniRef90	UniRef90_A0A7X4ZRJ7	Phage head-tail joining protein	NA
UHGV-0112342_23	eggNOG-mapper	195103.CPF_1582	Phage head-tail adaptor	NA
UHGV-0112342_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0112342_23	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0112342_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0112342_24	UniRef90	UniRef90_A0A5S4VQ23	Phage gp6-like head-tail connector protein	NA
UHGV-0112342_24	eggNOG-mapper	411468.CLOSCI_01492	NA	NA
UHGV-0112342_24	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0112342_24	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0112342_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0112342_25	UniRef90	UniRef90_A0A174ZQ75	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0112342_25	eggNOG-mapper	742741.HMPREF9475_00425	Phage capsid family	NA
UHGV-0112342_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0112342_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0112342_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0112342_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0112342_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0112342_26	UniRef90	UniRef90_B0NDG2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0112342_26	eggNOG-mapper	742741.HMPREF9475_00424	Clp protease	NA
UHGV-0112342_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0112342_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0112342_26	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0112342_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0112342_27	UniRef90	UniRef90_A0A7X4ZSU3	Phage portal protein	NA
UHGV-0112342_27	eggNOG-mapper	742741.HMPREF9475_00423	Phage portal protein	NA
UHGV-0112342_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0112342_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0112342_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0112342_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0112342_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0112342_28	UniRef90	UniRef90_A0A174ZPG1	Phage terminase-like protein, large subunit	NA
UHGV-0112342_28	eggNOG-mapper	742741.HMPREF9475_00422	Phage Terminase	NA
UHGV-0112342_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0112342_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0112342_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0112342_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0112342_29	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0112342_29	UniRef90	UniRef90_B0NDF9	Phage terminase, small subunit, P27 family	NA
UHGV-0112342_29	eggNOG-mapper	411468.CLOSCI_01487	Phage terminase, small subunit	NA
UHGV-0112342_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0112342_29	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0112342_29	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0112342_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0112342_30	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112342_30	UniRef90	UniRef90_B0NDF8	HNH endonuclease domain protein	NA
UHGV-0112342_30	eggNOG-mapper	411468.CLOSCI_01486	NA	NA
UHGV-0112342_31	PHROG	phrog_1558	NA	unknown function
UHGV-0112342_31	eggNOG-mapper	742741.HMPREF9475_00419	NA	NA
UHGV-0112342_31	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0112342_33	PHROG	phrog_34936	NA	unknown function
UHGV-0112342_33	eggNOG-mapper	411468.CLOSCI_01482	NA	NA
UHGV-0112342_35	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0112342_35	PHROG	phrog_15982	NA	unknown function
UHGV-0112342_35	UniRef90	UniRef90_A0A7X3SK65	NA	NA
UHGV-0112342_35	eggNOG-mapper	742741.HMPREF9475_00414	NA	NA
UHGV-0112342_35	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0112342_35	Pfam	PF12961	NA	DUF3850
UHGV-0112342_35	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0112342_35	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0112342_37	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0112342_37	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0112342_37	UniRef90	UniRef90_A0A412T732	ParA family protein	NA
UHGV-0112342_37	eggNOG-mapper	411468.CLOSCI_01475	Cellulose biosynthesis protein BcsQ	NA
UHGV-0112342_37	Pfam	PF13614	AAA domain	AAA_31
UHGV-0112342_37	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0112342_37	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0112342_40	PHROG	phrog_824	NA	unknown function
UHGV-0112342_40	UniRef90	UniRef90_A0A174ZEZ2	VRR-NUC domain	NA
UHGV-0112342_40	eggNOG-mapper	742741.HMPREF9475_00407	VRR_NUC	NA
UHGV-0112342_40	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0112342_41	Structural annotation	PF04612	NA	NA
UHGV-0112342_42	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0112342_42	PHROG	phrog_19890	NA	unknown function
UHGV-0112342_42	UniRef90	UniRef90_A0A0M6WRS2	SLT domain-containing protein	NA
UHGV-0112342_42	eggNOG-mapper	411468.CLOSCI_01470	Transglycosylase SLT domain	NA
UHGV-0112342_42	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0112342_42	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0112342_43	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0112342_43	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0112342_43	eggNOG-mapper	411468.CLOSCI_01469	NA	NA
UHGV-0112342_43	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0112342_44	UniRef90	UniRef90_A0A416Z3U8	Helix-turn-helix domain-containing protein	NA
UHGV-0112342_44	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0112342_45	PHROG	phrog_36092	NA	unknown function
UHGV-0112342_45	eggNOG-mapper	411468.CLOSCI_01466	NA	NA
UHGV-0112342_46	PHROG	phrog_38345	NA	unknown function
UHGV-0112342_46	Structural annotation	PF01375, NF002013, COG3502	NA	NA
UHGV-0112342_47	PHROG	phrog_35340	NA	unknown function
UHGV-0112342_47	eggNOG-mapper	411468.CLOSCI_01464	NA	NA
UHGV-0112342_47	Structural annotation	PF18275	NA	NA
UHGV-0112342_52	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0112342_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0112342_52	UniRef90	UniRef90_A0A1C6JSC5	Antitoxin PezA	NA
UHGV-0112342_52	eggNOG-mapper	742741.HMPREF9475_00400	Helix-turn-helix XRE-family like proteins	NA
UHGV-0112342_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112342_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0112342_52	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0112342_54	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0112342_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0112342_54	UniRef90	UniRef90_UPI000429DCC1	helix-turn-helix transcriptional regulator	NA
UHGV-0112342_54	eggNOG-mapper	411468.CLOSCI_01455	Helix-turn-helix XRE-family like proteins	NA
UHGV-0112342_54	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0112342_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112342_54	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0112342_55	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0112342_55	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0112342_55	UniRef90	UniRef90_A0A1H3IFD5	DNA polymerase-3 subunit epsilon	NA
UHGV-0112342_55	eggNOG-mapper	1243664.CAVL020000010_gene4579	3' exoribonuclease, RNase T-like	NA
UHGV-0112342_55	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0112342_55	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0112342_55	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0112342_55	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0112342_55	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0112342_56	KOfam	K14059	int; integrase	NA
UHGV-0112342_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0112342_56	UniRef90	UniRef90_A0A174ZXT5	Tyrosine recombinase XerD	NA
UHGV-0112342_56	eggNOG-mapper	585394.RHOM_14030	Belongs to the 'phage' integrase family	NA
UHGV-0112342_56	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0112342_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0112342_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0112342_56	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA