UHGV-0112368

Genome information

Genome length 36,930 bps

CDS count 68

Completeness 82.63% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112368
vOTU ID	vOTU-015544
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_252333
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.34
Jumbo phage	No

Genome content
Genome length	36,930 bps
GC content	53.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	90.90%
Average CDS length	499.72 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112368_1	PHROG	phrog_15768	NA	unknown function
UHGV-0112368_1	eggNOG-mapper	888059.HMPREF9071_2112	NA	NA
UHGV-0112368_2	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0112368_2	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0112368_2	UniRef90	UniRef90_UPI0018973262	AAA family ATPase	NA
UHGV-0112368_2	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0112368_2	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0112368_2	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0112368_2	COG	COG0305	Replicative DNA helicase	NA
UHGV-0112368_2	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0112368_4	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0112368_4	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0112368_4	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0112368_4	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0112368_4	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0112368_5	Structural annotation	PF12759	NA	NA
UHGV-0112368_6	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0112368_6	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0112368_6	UniRef90	UniRef90_A0A6I2QZV1	Cytosine-specific methyltransferase	NA
UHGV-0112368_6	eggNOG-mapper	742738.HMPREF9460_04053	C-5 cytosine-specific DNA methylase	NA
UHGV-0112368_6	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0112368_6	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0112368_6	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0112368_6	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0112368_6	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0112368_7	UniRef90	UniRef90_UPI0018AC26C5	Lar family restriction alleviation protein	NA
UHGV-0112368_7	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0112368_7	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0112368_8	PHROG	phrog_25732	NA	unknown function
UHGV-0112368_8	Structural annotation	NF011227	NA	NA
UHGV-0112368_10	Structural annotation	NF000937	NA	NA
UHGV-0112368_13	PHROG	phrog_38832	NA	unknown function
UHGV-0112368_13	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0112368_15	PHROG	phrog_22543	NA	unknown function
UHGV-0112368_18	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112368_18	UniRef90	UniRef90_A0A6L8SWJ4	AP2 domain-containing protein	NA
UHGV-0112368_18	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0112368_20	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0112368_20	PHROG	phrog_4836	CII-like regulator	transcription regulation
UHGV-0112368_20	UniRef90	UniRef90_U2R0P8	DNA-binding helix-turn-helix protein	NA
UHGV-0112368_20	eggNOG-mapper	1226322.HMPREF1545_02890	Helix-turn-helix XRE-family like proteins	NA
UHGV-0112368_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112368_20	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0112368_22	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0112368_22	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0112368_22	UniRef90	UniRef90_A0A7I8D1Y4	Putative P1-type antirepressor - phage associated	NA
UHGV-0112368_22	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0112368_22	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0112368_22	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0112368_22	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0112368_22	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0112368_23	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0112368_23	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0112368_23	eggNOG-mapper	1145276.T479_19995	Phage terminase, small subunit	NA
UHGV-0112368_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0112368_23	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0112368_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0112368_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0112368_24	UniRef90	UniRef90_A0A1Y4R6J8	Terminase	NA
UHGV-0112368_24	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0112368_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0112368_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0112368_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0112368_24	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0112368_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0112368_25	UniRef90	UniRef90_U2SKC6	Phage portal protein, HK97 family	NA
UHGV-0112368_25	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0112368_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0112368_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0112368_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0112368_25	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0112368_26	KOfam	K06904	NA	NA
UHGV-0112368_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0112368_26	UniRef90	UniRef90_A0A1F2PDD9	Caudovirus prohead protease	NA
UHGV-0112368_26	eggNOG-mapper	398512.JQKC01000009_gene450	Phage prohead protease, HK97 family	NA
UHGV-0112368_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0112368_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0112368_26	COG	COG3740	Phage head maturation protease	NA
UHGV-0112368_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0112368_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0112368_27	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0112368_27	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0112368_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0112368_27	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0112368_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0112368_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0112368_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0112368_28	PHROG	phrog_2550	NA	unknown function
UHGV-0112368_28	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0112368_28	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0112368_29	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0112368_29	UniRef90	UniRef90_U2R2J1	Putative phage head-tail adaptor	NA
UHGV-0112368_29	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-0112368_29	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0112368_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0112368_30	UniRef90	UniRef90_UPI001D00FAFD	HK97 gp10 family phage protein	NA
UHGV-0112368_30	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0112368_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0112368_30	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0112368_31	PHROG	phrog_78	tail terminator	connector
UHGV-0112368_31	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-0112368_31	eggNOG-mapper	1226322.HMPREF1545_00120	NA	NA
UHGV-0112368_31	Structural annotation	PF20765	NA	NA
UHGV-0112368_32	PHROG	phrog_88	major tail protein	tail
UHGV-0112368_32	UniRef90	UniRef90_UPI001D02B2B9	phage tail protein	NA
UHGV-0112368_32	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-0112368_32	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0112368_32	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0112368_33	PHROG	phrog_709	NA	unknown function
UHGV-0112368_33	eggNOG-mapper	1226322.HMPREF1545_00122	NA	NA
UHGV-0112368_33	Structural annotation	PF11836	NA	NA
UHGV-0112368_34	PHROG	phrog_3033	NA	unknown function
UHGV-0112368_34	eggNOG-mapper	1226322.HMPREF1545_00123	NA	NA
UHGV-0112368_35	PHROG	phrog_23464	NA	unknown function
UHGV-0112368_35	eggNOG-mapper	926561.KB900622_gene636	phage tail tape measure protein	NA
UHGV-0112368_35	COG	COG5283	Phage-related tail protein	NA
UHGV-0112368_35	Structural annotation	PF20155, TIGR02971, COG5280	NA	NA
UHGV-0112368_36	PHROG	phrog_1194	NA	unknown function
UHGV-0112368_36	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0112368_36	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0112368_37	PHROG	phrog_32744	NA	unknown function
UHGV-0112368_37	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0112368_37	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0112368_39	PHROG	phrog_24451	NA	unknown function
UHGV-0112368_40	PHROG	phrog_2310	NA	unknown function
UHGV-0112368_41	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0112368_41	PHROG	phrog_18955	NA	unknown function
UHGV-0112368_41	UniRef90	UniRef90_A0A1C7FQI4	MurNAc-LAA domain-containing protein	NA
UHGV-0112368_41	eggNOG-mapper	1121344.JHZO01000003_gene744	Ami_3	NA
UHGV-0112368_41	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0112368_41	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0112368_41	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0112368_41	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-0112368_42	PHROG	phrog_1129	holin	lysis
UHGV-0112368_42	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-0112368_42	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0112368_42	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0112368_42	Structural annotation	PF06946	NA	NA
UHGV-0112368_43	PHROG	phrog_4105	NA	unknown function
UHGV-0112368_43	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0112368_44	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-0112368_44	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0112368_47	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0112368_49	PHROG	phrog_16490	NA	unknown function
UHGV-0112368_49	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0112368_50	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0112368_51	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0112368_52	KOfam	K14059	int; integrase	NA
UHGV-0112368_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0112368_52	UniRef90	UniRef90_UPI0018A8CCD8	site-specific integrase	NA
UHGV-0112368_52	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0112368_52	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0112368_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0112368_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0112368_52	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0112368_53	PHROG	phrog_33872	NA	unknown function
UHGV-0112368_54	PHROG	phrog_37750	NA	unknown function
UHGV-0112368_54	UniRef90	UniRef90_UPI001D06EB78	NA	NA
UHGV-0112368_54	eggNOG-mapper	1280390.CBQR020000086_gene1875	NA	NA
UHGV-0112368_54	Pfam	PF12978	NA	DUF3862
UHGV-0112368_54	Structural annotation	PF16146, MF_00867, COG5007	NA	NA
UHGV-0112368_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0112368_56	UniRef90	UniRef90_UPI001A9B476A	helix-turn-helix transcriptional regulator	NA
UHGV-0112368_56	eggNOG-mapper	411471.SUBVAR_05818	sequence-specific DNA binding	NA
UHGV-0112368_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112368_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0112368_56	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0112368_61	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0112368_64	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0112368_64	PHROG	phrog_9562	NA	unknown function
UHGV-0112368_64	UniRef90	UniRef90_UPI001923F0E2	pentapeptide repeat-containing protein	NA
UHGV-0112368_64	eggNOG-mapper	1232443.BAIA02000078_gene49	Pentapeptide repeat protein	NA
UHGV-0112368_64	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0112368_64	Pfam	PF19062	NA	DUF5758
UHGV-0112368_64	COG	COG1357	NA	NA
UHGV-0112368_64	Structural annotation	PF19062, PF13599, NF011744, COG1357	NA	NA
UHGV-0112368_65	Structural annotation	PF09943	NA	NA
UHGV-0112368_67	PHROG	phrog_862	NA	unknown function
UHGV-0112368_67	eggNOG-mapper	279238.Saro_3022	NA	NA
UHGV-0112368_67	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0112368_68	Pfam	PF19808	NA	DUF6291