UHGV-0112386

Genome information

vOTU vOTU-001982

Genome length 38,540 bps

CDS count 62

Completeness 100.00% (complete)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112386
vOTU ID	vOTU-001982
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_258606
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	6.19
Jumbo phage	No

Genome content
Genome length	38,540 bps
GC content	29.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.04%
Average CDS length	562.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112386_3	Pfam	PF13420	Acetyltransferase (GNAT) domain	Acetyltransf_4
UHGV-0112386_4	PHROG	phrog_5107	amidase	lysis
UHGV-0112386_4	Structural annotation	PF11134, MF_00923, NF010237, COG4257	NA	NA
UHGV-0112386_6	PHROG	phrog_267	major head protein	head and packaging
UHGV-0112386_6	UniRef90	UniRef90_A0A3D0PZL2	Coat protein	NA
UHGV-0112386_6	eggNOG-mapper	1123405.AUMM01000039_gene151	P22 coat protein-protein 5 domain protein	NA
UHGV-0112386_10	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0112386_10	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0112386_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0112386_11	PHROG	phrog_10250	NA	unknown function
UHGV-0112386_11	UniRef90	UniRef90_K2E107	Terminase_3 domain-containing protein	NA
UHGV-0112386_11	eggNOG-mapper	1150626.PHAMO_80072	Terminase-like family	NA
UHGV-0112386_11	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0112386_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0112386_12	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0112386_12	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0112386_18	KOfam	K06871	NA	NA
UHGV-0112386_18	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-0112386_18	UniRef90	UniRef90_UPI001C034AEA	radical SAM protein	NA
UHGV-0112386_18	eggNOG-mapper	547042.BACCOPRO_01613	NA	NA
UHGV-0112386_18	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0112386_21	KOfam	K20918	vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation	NA
UHGV-0112386_21	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0112386_21	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0112386_27	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0112386_27	UniRef90	UniRef90_UPI00196B9835	HNH endonuclease	NA
UHGV-0112386_27	eggNOG-mapper	1348663.KCH_15110	HNH endonuclease	NA
UHGV-0112386_27	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0112386_32	KOfam	K01423	bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]	NA
UHGV-0112386_32	Pfam	PF01435	Peptidase family M48	Peptidase_M48
UHGV-0112386_32	COG	COG0501	Zn-dependent protease with chaperone function	NA
UHGV-0112386_32	Structural annotation	PF01435, MF_00997, NF002775, COG0501	NA	NA
UHGV-0112386_35	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0112386_35	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0112386_35	UniRef90	UniRef90_A0A2S7TSU1	Replicative DNA helicase	NA
UHGV-0112386_35	eggNOG-mapper	1121116.KB894765_gene730	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0112386_35	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0112386_35	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-0112386_35	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0112386_35	COG	COG0305	Replicative DNA helicase	NA
UHGV-0112386_35	Structural annotation	PF03796, PF05203, PF00772, MF_04155, MF_01420, TIGR00665, COG0305	NA	NA
UHGV-0112386_40	PHROG	phrog_221	metallo-phosphoesterase	other
UHGV-0112386_40	UniRef90	UniRef90_A0A3M1XMP0	Metallophosphoesterase	NA
UHGV-0112386_40	eggNOG-mapper	608538.HTH_0534	phosphoprotein phosphatase activity	NA
UHGV-0112386_40	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0112386_40	COG	COG0639	Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family	NA
UHGV-0112386_40	Structural annotation	MF_00325, NF041753, COG1311	NA	NA
UHGV-0112386_42	PHROG	phrog_21721	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0112386_42	UniRef90	UniRef90_A0A898KA72	NA	NA
UHGV-0112386_42	eggNOG-mapper	1589297.A0A0B5HAH5_9CAUD	magnesium ion binding	NA
UHGV-0112386_43	KOfam	K23786	exoA; 5'-3' exonuclease [EC:3.1.11.-]	NA
UHGV-0112386_43	PHROG	phrog_107	RNaseH	DNA, RNA and nucleotide metabolism
UHGV-0112386_43	UniRef90	UniRef90_A0A2E9NSW2	53EXOc domain-containing protein	NA
UHGV-0112386_43	eggNOG-mapper	665942.HMPREF1022_03272	5'-3' exonuclease, N-terminal resolvase-like domain	NA
UHGV-0112386_43	Pfam	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain	5_3_exonuc_N
UHGV-0112386_43	COG	COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	NA
UHGV-0112386_43	Structural annotation	PF02739, PF01367, MF_01192, NF011545, COG0258	NA	NA
UHGV-0112386_49	PHROG	phrog_31336	NA	unknown function
UHGV-0112386_49	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0112386_53	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0112386_53	PHROG	phrog_5867	endolysin	lysis
UHGV-0112386_53	UniRef90	UniRef90_R7LZY9	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0112386_53	eggNOG-mapper	388399.SSE37_03470	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0112386_53	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0112386_53	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0112386_53	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0112386_55	Structural annotation	NF008552	NA	NA
UHGV-0112386_58	PHROG	phrog_17779	NA	unknown function
UHGV-0112386_58	eggNOG-mapper	1458848.X2KS59_9CAUD	NA	NA
UHGV-0112386_59	PHROG	phrog_1084	NA	unknown function
UHGV-0112386_59	Structural annotation	PF10651, NF038114	NA	NA
UHGV-0112386_60	Structural annotation	PF21567, PF18573	NA	NA