UHGV-0112423

Genome information

Genome length 39,306 bps

CDS count 50

Completeness 91.26% (high-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0112423
vOTU ID	vOTU-014737
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_246302
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.26% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.76
Jumbo phage	No

Genome content
Genome length	39,306 bps
GC content	60.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.62%
Average CDS length	738.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0112423_1	KOfam	K14059	int; integrase	NA
UHGV-0112423_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0112423_1	UniRef90	UniRef90_A0A3D4D8C4	Integrase	NA
UHGV-0112423_1	eggNOG-mapper	742738.HMPREF9460_00840	Belongs to the 'phage' integrase family	NA
UHGV-0112423_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0112423_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0112423_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0112423_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0112423_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0112423_2	UniRef90	UniRef90_A0A3D4D7M3	HTH cro/C1-type domain-containing protein	NA
UHGV-0112423_2	eggNOG-mapper	1194526.A284_08095	Peptidase S24-like	NA
UHGV-0112423_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112423_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0112423_2	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0112423_3	UniRef90	UniRef90_A0A352SIQ1	HTH cro/C1-type domain-containing protein	NA
UHGV-0112423_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0112423_4	UniRef90	UniRef90_UPI00051C0A6D	helix-turn-helix domain-containing protein	NA
UHGV-0112423_4	eggNOG-mapper	246199.CUS_5910	NA	NA
UHGV-0112423_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0112423_4	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0112423_6	PHROG	phrog_6058	NA	unknown function
UHGV-0112423_6	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-0112423_6	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0112423_9	PHROG	phrog_36399	NA	unknown function
UHGV-0112423_9	eggNOG-mapper	1226322.HMPREF1545_00099	NA	NA
UHGV-0112423_10	PHROG	phrog_8470	NA	unknown function
UHGV-0112423_10	UniRef90	UniRef90_UPI0019580896	PcfJ domain-containing protein	NA
UHGV-0112423_10	eggNOG-mapper	1226322.HMPREF1545_00100	PcfJ-like protein	NA
UHGV-0112423_10	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0112423_10	Structural annotation	PF14284	NA	NA
UHGV-0112423_11	PHROG	phrog_15609	NA	unknown function
UHGV-0112423_11	UniRef90	UniRef90_UPI001C102D5E	NA	NA
UHGV-0112423_11	eggNOG-mapper	693746.OBV_24000	NA	NA
UHGV-0112423_11	Pfam	PF11300	NA	DUF3102
UHGV-0112423_11	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0112423_11	Structural annotation	PF11300, PF15591, PF07321, NF038070, NF008636, COG4568	NA	NA
UHGV-0112423_12	Structural annotation	PF08207	NA	NA
UHGV-0112423_13	PHROG	phrog_3136	NA	unknown function
UHGV-0112423_13	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0112423_13	eggNOG-mapper	1007096.BAGW01000031_gene120	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0112423_13	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0112423_13	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0112423_14	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0112423_14	UniRef90	UniRef90_UPI000AAF359D	SAM-dependent DNA methyltransferase	NA
UHGV-0112423_14	eggNOG-mapper	1519439.JPJG01000060_gene1874	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0112423_14	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0112423_14	Structural annotation	PF05869, MF_01872, NF000058, COG4123	NA	NA
UHGV-0112423_15	PHROG	phrog_27610	NA	unknown function
UHGV-0112423_17	Structural annotation	PF08271	NA	NA
UHGV-0112423_20	PHROG	phrog_38832	NA	unknown function
UHGV-0112423_20	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0112423_22	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0112423_25	PHROG	phrog_872	NA	unknown function
UHGV-0112423_25	UniRef90	UniRef90_A0A8J6M9F5	NA	NA
UHGV-0112423_25	eggNOG-mapper	1519439.JPJG01000060_gene1880	NA	NA
UHGV-0112423_25	Pfam	PF11195	NA	DUF2829
UHGV-0112423_25	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0112423_25	Structural annotation	PF11195	NA	NA
UHGV-0112423_27	eggNOG-mapper	1226322.HMPREF1545_00288	NA	NA
UHGV-0112423_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0112423_28	eggNOG-mapper	1519439.JPJG01000060_gene1883	NA	NA
UHGV-0112423_28	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0112423_29	PHROG	phrog_3896	NA	unknown function
UHGV-0112423_29	UniRef90	UniRef90_E5RWT2	Srl	NA
UHGV-0112423_29	eggNOG-mapper	397290.C810_01338	NA	NA
UHGV-0112423_31	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0112423_31	eggNOG-mapper	1519439.JPJG01000060_gene1884	DNA-packaging protein gp3	NA
UHGV-0112423_31	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0112423_31	Structural annotation	PF16677	NA	NA
UHGV-0112423_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0112423_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0112423_32	UniRef90	UniRef90_A0A3D4D7N6	PBSX family phage terminase large subunit	NA
UHGV-0112423_32	eggNOG-mapper	1519439.JPJG01000060_gene1885	phage Terminase large subunit	NA
UHGV-0112423_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0112423_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0112423_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0112423_32	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0112423_33	PHROG	phrog_156	portal protein	head and packaging
UHGV-0112423_33	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-0112423_33	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0112423_34	PHROG	phrog_30605	NA	unknown function
UHGV-0112423_35	PHROG	phrog_35275	NA	unknown function
UHGV-0112423_35	eggNOG-mapper	1519439.JPJG01000060_gene1888	NA	NA
UHGV-0112423_36	PHROG	phrog_24113	NA	unknown function
UHGV-0112423_36	eggNOG-mapper	1519439.JPJG01000060_gene1889	NA	NA
UHGV-0112423_36	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0112423_37	PHROG	phrog_371	major head protein	head and packaging
UHGV-0112423_37	UniRef90	UniRef90_R6TFU9	Mu-like_gpT domain-containing protein	NA
UHGV-0112423_37	eggNOG-mapper	1519439.JPJG01000060_gene1890	NA	NA
UHGV-0112423_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0112423_38	PHROG	phrog_12105	NA	unknown function
UHGV-0112423_38	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0112423_39	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0112423_39	PHROG	phrog_3420	NA	unknown function
UHGV-0112423_39	UniRef90	UniRef90_UPI00068BE71D	collagen-like protein	NA
UHGV-0112423_39	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0112423_39	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0112423_39	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0112423_39	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0112423_41	PHROG	phrog_27545	NA	unknown function
UHGV-0112423_41	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0112423_41	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0112423_41	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0112423_41	Structural annotation	PF16170	NA	NA
UHGV-0112423_42	PHROG	phrog_4105	NA	unknown function
UHGV-0112423_44	PHROG	phrog_13256	NA	unknown function
UHGV-0112423_44	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-0112423_45	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0112423_45	PHROG	phrog_670	endolysin	lysis
UHGV-0112423_45	UniRef90	UniRef90_A0A352RPM1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0112423_45	eggNOG-mapper	1519439.JPJG01000060_gene1899	Ami_2	NA
UHGV-0112423_45	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0112423_45	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0112423_45	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0112423_46	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0112423_46	UniRef90	UniRef90_U2SWT4	Peptidase S74 domain-containing protein	NA
UHGV-0112423_46	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-0112423_46	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0112423_46	Structural annotation	PF07902, NF041249	NA	NA
UHGV-0112423_48	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0112423_48	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-0112423_48	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0112423_49	eggNOG-mapper	1519439.JPJG01000060_gene1904	NA	NA
UHGV-0112423_50	UniRef90	UniRef90_A0A3D4D8G0	PBECR5 domain-containing protein	NA
UHGV-0112423_50	eggNOG-mapper	1519439.JPJG01000060_gene1905	NA	NA
UHGV-0112423_50	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3